View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11821_low_18 (Length: 333)
Name: NF11821_low_18
Description: NF11821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11821_low_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-169; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 18513356 - 18513036
Alignment:
| Q |
1 |
gctcttacgtttagcttacataaattagtgatatacaatgcaaaagcaaacatttaggagtttatagagaataaattatagagcatatagcgaataagga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18513356 |
gctcttacgtttagcttacataaattagtgatatacaatgcaaaatcaaacatttaggagtttatagagaataaattatagagcatatagcgaataagga |
18513257 |
T |
|
| Q |
101 |
gatatagaaatttggattgggataagcttaatatcaaagaaagctaatgaggactggtggtttgaagttgtatcttcctttagtttggcattgtataaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18513256 |
gatatagaaatttggattgggataagcttaatatcaaagaaagctaatgaggactggtggtttgaagttgtatcttcctttagtttggcattgtataaaa |
18513157 |
T |
|
| Q |
201 |
gctttatgcagggttacatt----aaacctaggagaatagttggatcccttgtttactatgcaaaaatccatatgatcacctctttgtgtagtccatcaa |
296 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18513156 |
gctttatgcagggttacattcataaaacctaggagaatagttggatcccttgtttactatgcaaaaatccatatgatcacctctttgtgtagtccatcaa |
18513057 |
T |
|
| Q |
297 |
gtttttagaatagatagttag |
317 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
18513056 |
gtttttagaatagatagttag |
18513036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 214
Target Start/End: Complemental strand, 1985313 - 1985270
Alignment:
| Q |
171 |
tatcttcctttagtttggcattgtataaaagctttatgcagggt |
214 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
1985313 |
tatcttcctttaatttgtcattgtataaaagctttatgcagggt |
1985270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 168; Significance: 5e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 14516286 - 14516610
Alignment:
| Q |
1 |
gctcttacgtttagcttacataaattagtgatatacaatgcaaaagcaaacatttaggagtttatagagaataaattatagagcatatagcgaataagga |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||||||| ||||||| ||||| | || |||||||| |||||||||||| |||||||||| || |
|
|
| T |
14516286 |
gctcttatgtttagcttacataaattagtggcatacaatgcaaaatcaaacatataggaatctacagagaatagattatagagcatttagcgaataatga |
14516385 |
T |
|
| Q |
101 |
gatatagaaa-tttggattgggataagcttaatatcaaagaaagctaatgaggactggtggtttgaagttgtatcttcctttagtttggcattgtataaa |
199 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
14516386 |
tatatacaaaatttggattgggataagcttaatatcaaagaaacctaatgaagactggtggtttgaagttgtatcttccttgaatttggcattgtataaa |
14516485 |
T |
|
| Q |
200 |
agctttatgcagggt------------tacattaaacctaggagaatagttggatcccttgtttactatgcaaaaatccatatgatcacctctttgtgta |
287 |
Q |
| |
|
|| | ||||||| || ||||| ||||||| |||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
14516486 |
agttgtatgcagagtggtaattcaaaatacataaaacctaagagaattcttggatcccttgtttactgtgcaaaaatccatatgatcgcctctttgtgta |
14516585 |
T |
|
| Q |
288 |
gtccatcaagtttttagaatagata |
312 |
Q |
| |
|
|||||||||||||| |||||||||| |
|
|
| T |
14516586 |
gtccatcaagttttcagaatagata |
14516610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 230 - 307
Target Start/End: Complemental strand, 6942383 - 6942306
Alignment:
| Q |
230 |
agaatagttggatcccttgtttactatgcaaaaatccatatgatcacctctttgtgtagtccatcaagtttttagaat |
307 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||| |||||||||| ||||||| ||||| |||||||||| ||||| |
|
|
| T |
6942383 |
agaatacttggatcccttctttactatgcaaaaaaccatatgatctactctttggatagtctatcaagttttcagaat |
6942306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 138
Target Start/End: Complemental strand, 18959949 - 18959880
Alignment:
| Q |
69 |
gaataaattatagagcatatagcgaataaggagatatagaaatttggattgggataagcttaatatcaaa |
138 |
Q |
| |
|
||||||| ||||||| ||||||| ||||||| |||||| ||||||||||| | |||||| ||| |||||| |
|
|
| T |
18959949 |
gaataaactatagagaatatagcaaataaggcgatataaaaatttggattagaataagcataacatcaaa |
18959880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University