View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11821_low_2 (Length: 1127)

Name: NF11821_low_2
Description: NF11821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11821_low_2
NF11821_low_2
[»] chr4 (57 HSPs)
chr4 (857-1122)||(44499085-44499350)
chr4 (597-761)||(44498852-44499016)
chr4 (224-470)||(44498493-44498740)
chr4 (17-224)||(51514889-51515099)
chr4 (225-398)||(56085381-56085554)
chr4 (226-398)||(26629826-26629997)
chr4 (227-392)||(4871530-4871695)
chr4 (226-398)||(1519846-1520017)
chr4 (226-449)||(36845444-36845667)
chr4 (225-398)||(19750203-19750375)
chr4 (225-398)||(19789431-19789603)
chr4 (326-456)||(7707725-7707854)
chr4 (304-398)||(52138702-52138799)
chr4 (326-398)||(27850846-27850918)
chr4 (309-398)||(52239994-52240085)
chr4 (224-289)||(44500002-44500067)
chr4 (326-470)||(2312319-2312461)
chr4 (300-398)||(13165604-13165702)
chr4 (306-398)||(26496218-26496311)
chr4 (324-449)||(49896442-49896567)
chr4 (306-381)||(40723342-40723417)
chr4 (326-392)||(11968647-11968713)
chr4 (327-397)||(15449984-15450054)
chr4 (300-366)||(53435694-53435760)
chr4 (225-278)||(4872260-4872313)
chr4 (326-398)||(1794548-1794620)
chr4 (226-289)||(1521212-1521275)
chr4 (225-292)||(23104022-23104089)
chr4 (225-292)||(45535080-45535147)
chr4 (226-288)||(36846578-36846640)
chr4 (338-398)||(7053324-7053384)
chr4 (309-398)||(28590813-28590904)
chr4 (300-384)||(56157419-56157503)
chr4 (309-376)||(6348272-6348339)
chr4 (308-386)||(7708710-7708788)
chr4 (305-366)||(52963682-52963743)
chr4 (225-292)||(49895074-49895142)
chr4 (307-386)||(34326843-34326922)
chr4 (227-278)||(56086580-56086631)
chr4 (324-366)||(4714153-4714195)
chr4 (300-366)||(13166710-13166776)
chr4 (308-386)||(22069352-22069430)
chr4 (227-289)||(26631237-26631299)
chr4 (304-398)||(53432175-53432269)
chr4 (305-449)||(1829866-1830007)
chr4 (353-398)||(23103918-23103962)
chr4 (411-456)||(27847895-27847940)
chr4 (326-395)||(42810115-42810184)
chr4 (305-377)||(393568-393640)
chr4 (346-386)||(23202002-23202042)
chr4 (232-288)||(26491458-26491514)
chr4 (308-386)||(33231506-33231584)
chr4 (308-398)||(36243636-36243726)
chr4 (310-386)||(8682769-8682845)
chr4 (226-275)||(23102617-23102666)
chr4 (353-398)||(45535207-45535251)
chr4 (226-275)||(45536505-45536554)
[»] chr8 (48 HSPs)
chr8 (857-1111)||(24191866-24192119)
chr8 (575-762)||(24192211-24192398)
chr8 (224-470)||(24192500-24192746)
chr8 (226-457)||(20180524-20180755)
chr8 (222-398)||(10669354-10669530)
chr8 (226-398)||(31845704-31845875)
chr8 (226-398)||(43202131-43202303)
chr8 (308-456)||(17455164-17455311)
chr8 (326-398)||(32798440-32798512)
chr8 (225-332)||(39174702-39174809)
chr8 (304-377)||(42872120-42872193)
chr8 (326-470)||(32695112-32695254)
chr8 (225-386)||(42362672-42362832)
chr8 (309-381)||(42877736-42877808)
chr8 (304-398)||(9854788-9854883)
chr8 (225-332)||(35799485-35799592)
chr8 (310-386)||(38696427-38696503)
chr8 (224-288)||(39173149-39173213)
chr8 (224-332)||(32552329-32552437)
chr8 (305-398)||(42098675-42098771)
chr8 (225-278)||(7844745-7844798)
chr8 (224-289)||(24191410-24191475)
chr8 (224-288)||(32553926-32553990)
chr8 (224-288)||(35800998-35801062)
chr8 (303-377)||(24305154-24305228)
chr8 (336-398)||(40437505-40437567)
chr8 (224-289)||(10668002-10668067)
chr8 (326-398)||(45281097-45281169)
chr8 (331-381)||(42878756-42878806)
chr8 (310-398)||(14840808-14840896)
chr8 (308-398)||(6397899-6397989)
chr8 (225-278)||(35070686-35070739)
chr8 (346-398)||(4810621-4810673)
chr8 (338-398)||(13117541-13117601)
chr8 (304-368)||(17701052-17701116)
chr8 (307-398)||(8571525-8571616)
chr8 (226-289)||(24306143-24306206)
chr8 (304-398)||(42870925-42871022)
chr8 (308-398)||(22551123-22551213)
chr8 (305-374)||(13116443-13116512)
chr8 (353-398)||(37400942-37400987)
chr8 (305-386)||(42100028-42100109)
chr8 (225-273)||(28291329-28291377)
chr8 (305-398)||(30786789-30786884)
chr8 (227-287)||(43203300-43203360)
chr8 (226-289)||(31844403-31844466)
chr8 (231-289)||(38697908-38697966)
chr8 (309-398)||(32693947-32694036)
[»] chr7 (43 HSPs)
chr7 (857-1122)||(44375835-44376100)
chr7 (857-1122)||(44384702-44384967)
chr7 (575-762)||(44375556-44375743)
chr7 (575-762)||(44384423-44384610)
chr7 (224-457)||(44372762-44372995)
chr7 (224-457)||(44381618-44381851)
chr7 (226-398)||(43441381-43441553)
chr7 (220-398)||(35295728-35295906)
chr7 (233-449)||(16755913-16756127)
chr7 (225-384)||(15992169-15992328)
chr7 (225-398)||(669298-669470)
chr7 (307-398)||(46201247-46201338)
chr7 (300-398)||(2414854-2414952)
chr7 (304-398)||(40811432-40811528)
chr7 (326-386)||(11502341-11502401)
chr7 (326-398)||(32255126-32255198)
chr7 (326-398)||(43460731-43460803)
chr7 (225-291)||(29589286-29589352)
chr7 (325-470)||(13564076-13564220)
chr7 (306-398)||(39981431-39981524)
chr7 (306-398)||(41328333-41328426)
chr7 (305-398)||(47454450-47454543)
chr7 (339-470)||(22537708-22537836)
chr7 (226-292)||(9081428-9081494)
chr7 (308-395)||(22336095-22336184)
chr7 (225-289)||(3332175-3332239)
chr7 (233-285)||(44376710-44376762)
chr7 (233-285)||(44385577-44385629)
chr7 (308-366)||(22115105-22115163)
chr7 (308-366)||(40509675-40509733)
chr7 (225-269)||(48312691-48312735)
chr7 (226-289)||(43442781-43442844)
chr7 (317-395)||(30334554-30334631)
chr7 (227-292)||(3330728-3330793)
chr7 (304-449)||(47059220-47059370)
chr7 (307-358)||(33779036-33779087)
chr7 (308-398)||(40508495-40508585)
chr7 (305-375)||(47060408-47060478)
chr7 (305-356)||(11501293-11501344)
chr7 (225-272)||(48312058-48312105)
chr7 (308-366)||(4299989-4300047)
chr7 (226-272)||(10957189-10957235)
chr7 (226-272)||(26135676-26135722)
[»] chr5 (25 HSPs)
chr5 (226-398)||(1102653-1102825)
chr5 (225-470)||(9220296-9220542)
chr5 (226-464)||(4127091-4127334)
chr5 (226-447)||(10735798-10736018)
chr5 (305-464)||(30910854-30911015)
chr5 (302-398)||(30859079-30859178)
chr5 (304-398)||(39603965-39604062)
chr5 (309-381)||(1010291-1010363)
chr5 (309-381)||(8521372-8521444)
chr5 (330-398)||(11262532-11262600)
chr5 (326-398)||(22047869-22047941)
chr5 (326-398)||(27705224-27705296)
chr5 (308-470)||(36898815-36898980)
chr5 (305-398)||(325095-325188)
chr5 (331-381)||(1009325-1009375)
chr5 (300-366)||(33173901-33173967)
chr5 (226-289)||(10736956-10737019)
chr5 (346-464)||(13520642-13520760)
chr5 (308-366)||(22308740-22308798)
chr5 (226-386)||(35081358-35081518)
chr5 (306-377)||(324153-324225)
chr5 (223-332)||(11797508-11797617)
chr5 (307-378)||(15548352-15548426)
chr5 (308-386)||(30912084-30912162)
chr5 (226-272)||(28702604-28702650)
[»] chr1 (50 HSPs)
chr1 (225-386)||(3617418-3617579)
chr1 (225-449)||(9226073-9226297)
chr1 (226-464)||(5612928-5613166)
chr1 (225-449)||(6049283-6049506)
chr1 (226-398)||(26286447-26286618)
chr1 (226-398)||(48527569-48527741)
chr1 (311-386)||(13147337-13147412)
chr1 (326-470)||(16964963-16965106)
chr1 (307-398)||(44999371-44999462)
chr1 (306-398)||(51445704-51445797)
chr1 (225-398)||(12665825-12665997)
chr1 (307-398)||(35943355-35943447)
chr1 (306-381)||(48096958-48097033)
chr1 (300-470)||(46318456-46318624)
chr1 (324-398)||(52078053-52078127)
chr1 (310-398)||(14478384-14478473)
chr1 (305-398)||(46110395-46110488)
chr1 (226-289)||(26287802-26287865)
chr1 (306-376)||(15746697-15746767)
chr1 (225-398)||(18821648-18821821)
chr1 (326-398)||(45584916-45584988)
chr1 (334-398)||(49801761-49801825)
chr1 (307-386)||(15072711-15072790)
chr1 (323-398)||(26802072-26802147)
chr1 (225-292)||(27556304-27556371)
chr1 (225-292)||(52076565-52076632)
chr1 (308-382)||(9482573-9482646)
chr1 (316-386)||(9485225-9485295)
chr1 (308-398)||(13894731-13894820)
chr1 (304-386)||(16963946-16964028)
chr1 (308-366)||(41873912-41873970)
chr1 (228-292)||(3615284-3615348)
chr1 (304-392)||(10711901-10711989)
chr1 (309-392)||(10722291-10722374)
chr1 (226-398)||(28050356-28050528)
chr1 (307-398)||(46467262-46467352)
chr1 (308-366)||(14477732-14477790)
chr1 (304-398)||(15232864-15232960)
chr1 (308-364)||(14470973-14471029)
chr1 (226-289)||(5611761-5611824)
chr1 (225-292)||(6047953-6048019)
chr1 (323-447)||(24517477-24517601)
chr1 (326-366)||(34350248-34350288)
chr1 (226-273)||(7306289-7306336)
chr1 (307-366)||(23091468-23091527)
chr1 (226-273)||(48528931-48528978)
chr1 (408-449)||(3616750-3616791)
chr1 (353-398)||(27556431-27556475)
chr1 (226-275)||(27557723-27557772)
chr1 (315-396)||(27814416-27814497)
[»] chr3 (43 HSPs)
chr3 (225-386)||(10338772-10338933)
chr3 (225-398)||(53194521-53194693)
chr3 (225-392)||(48083261-48083428)
chr3 (225-398)||(10300974-10301141)
chr3 (220-398)||(14745109-14745287)
chr3 (339-470)||(26886421-26886551)
chr3 (326-470)||(35371043-35371187)
chr3 (326-398)||(38242424-38242496)
chr3 (300-398)||(42684985-42685083)
chr3 (326-470)||(10731966-10732109)
chr3 (331-398)||(3208625-3208692)
chr3 (306-398)||(49379816-49379909)
chr3 (326-386)||(27841630-27841690)
chr3 (326-470)||(34819122-34819265)
chr3 (306-396)||(13621034-13621125)
chr3 (227-289)||(10301836-10301898)
chr3 (325-395)||(53614184-53614254)
chr3 (225-375)||(7270357-7270507)
chr3 (234-332)||(54110258-54110356)
chr3 (331-381)||(3455550-3455600)
chr3 (226-332)||(37416413-37416519)
chr3 (346-470)||(41264490-41264613)
chr3 (310-373)||(11224776-11224839)
chr3 (225-292)||(44603057-44603124)
chr3 (227-331)||(37415031-37415135)
chr3 (232-275)||(46370206-46370249)
chr3 (227-289)||(10339988-10340049)
chr3 (310-391)||(28909523-28909604)
chr3 (408-449)||(50809565-50809606)
chr3 (408-449)||(50810765-50810806)
chr3 (408-449)||(50865058-50865099)
chr3 (408-449)||(50866256-50866297)
chr3 (310-398)||(53420436-53420524)
chr3 (331-398)||(12107888-12107954)
chr3 (304-398)||(20314673-20314767)
chr3 (225-272)||(54108573-54108620)
chr3 (229-283)||(46368846-46368900)
chr3 (310-384)||(55328227-55328300)
chr3 (305-386)||(10730998-10731079)
chr3 (226-255)||(40241759-40241788)
chr3 (308-357)||(41263754-41263803)
chr3 (353-398)||(44602953-44602997)
chr3 (225-270)||(48084990-48085035)
[»] scaffold0219 (1 HSPs)
scaffold0219 (226-447)||(8051-8271)
[»] chr2 (32 HSPs)
chr2 (227-292)||(23233711-23233776)
chr2 (308-392)||(43033198-43033282)
chr2 (326-397)||(11317277-11317348)
chr2 (307-398)||(4920967-4921059)
chr2 (306-398)||(29219499-29219594)
chr2 (306-398)||(29332798-29332893)
chr2 (225-398)||(35903542-35903714)
chr2 (326-398)||(42641769-42641841)
chr2 (329-447)||(8320895-8321013)
chr2 (304-398)||(34464081-34464175)
chr2 (316-398)||(34513462-34513544)
chr2 (309-398)||(6030378-6030469)
chr2 (326-398)||(18616913-18616985)
chr2 (326-398)||(32469285-32469357)
chr2 (224-277)||(23231573-23231626)
chr2 (658-739)||(19239127-19239212)
chr2 (307-374)||(16295150-16295217)
chr2 (308-394)||(30749238-30749323)
chr2 (306-398)||(28611162-28611254)
chr2 (324-377)||(43034400-43034453)
chr2 (346-386)||(1085308-1085348)
chr2 (326-398)||(17459390-17459462)
chr2 (304-398)||(11547771-11547867)
chr2 (324-398)||(34467639-34467713)
chr2 (307-368)||(12359618-12359679)
chr2 (342-386)||(30748630-30748674)
chr2 (304-391)||(34512926-34513012)
chr2 (226-272)||(1149223-1149269)
chr2 (418-456)||(35903767-35903805)
chr2 (308-357)||(1083104-1083153)
chr2 (359-396)||(16290705-16290742)
chr2 (408-449)||(43034338-43034379)
[»] scaffold0118 (1 HSPs)
scaffold0118 (326-398)||(43482-43554)
[»] scaffold0077 (1 HSPs)
scaffold0077 (326-398)||(54092-54164)
[»] chr6 (15 HSPs)
chr6 (326-398)||(7311633-7311705)
chr6 (306-398)||(11722900-11722993)
chr6 (326-398)||(17837752-17837824)
chr6 (339-470)||(18346588-18346717)
chr6 (326-464)||(29381573-29381710)
chr6 (309-398)||(11967334-11967423)
chr6 (306-374)||(12669838-12669906)
chr6 (227-292)||(18242325-18242390)
chr6 (341-398)||(23392365-23392422)
chr6 (300-364)||(32506969-32507033)
chr6 (327-386)||(5187542-5187601)
chr6 (225-289)||(18240433-18240498)
chr6 (308-398)||(32505785-32505875)
chr6 (226-272)||(30231513-30231559)
chr6 (408-449)||(232318-232359)
[»] scaffold0013 (1 HSPs)
scaffold0013 (306-398)||(32685-32779)
[»] scaffold0011 (1 HSPs)
scaffold0011 (304-395)||(127546-127637)
[»] scaffold0031 (2 HSPs)
scaffold0031 (309-375)||(124086-124152)
scaffold0031 (338-398)||(125139-125200)
[»] scaffold0034 (1 HSPs)
scaffold0034 (331-398)||(108654-108721)
[»] scaffold2071 (1 HSPs)
scaffold2071 (338-398)||(590-650)
[»] scaffold0201 (1 HSPs)
scaffold0201 (308-366)||(21244-21302)
[»] scaffold0121 (1 HSPs)
scaffold0121 (227-292)||(4450-4515)
[»] scaffold0128 (1 HSPs)
scaffold0128 (310-398)||(22099-22187)


Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 57)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 857 - 1122
Target Start/End: Original strand, 44499085 - 44499350
Alignment:
Q  857 aaacattcaatacaatagtaactagaaacaacagagtatcaaatccaaattatgaacaaaccaagacaagaacagaggtgcagggtggcgctgaagggat 956  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  44499085 aaacattcaatacaatagtaactagaaacaacagagtatcaaatccaaattatgaacaaaccaagacaagaacagaggtgcagggcggcgctgaagggat 44499184  T
Q  957 gggcgaagactataggaatggtggtggttgcatgatggcggcgtggcgcaacggagaacgaccctttcgtggaaggaagatcagttttgaagagaaaatt 1056  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  44499185 gggcgaagactataggaatggtggtggttgcatgacggcggcgtggcgcaacggagaacgaccctttcgtggaagggagattagttttgaagagaaaatt 44499284  T
Q  1057 gatggacagattcgcacaggtgaccttgcttctccttccggcgttggttttgctctgtgctcctcc 1122  Q
    ||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||| |||||||    
T  44499285 gatggacagattcgcacagatgacctttcttctcctttcggcgttggttttgctctgttctcctcc 44499350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 157; E-Value: 7e-83
Query Start/End: Original strand, 597 - 761
Target Start/End: Original strand, 44498852 - 44499016
Alignment:
Q  597 attcatctcaattttctctttcaacatgattctgatttagaacatgaatgaattttagagatagagaaaataatttagaaaatcataacccattgaattg 696  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44498852 attcatctcaattttctctgtcaacatgattctgatttagaacatgaatgaattttagagatagagaaaataatttagaaaatcataacccattgaattg 44498951  T
Q  697 attttcattctcgtcaatatcgatacccatttaactttcttttcattataccacaaggctaaaac 761  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  44498952 attttcattctcgtcaatgtcgatacccatttaactttcttttcattataccacaaggctaaaac 44499016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 151; E-Value: 3e-79
Query Start/End: Original strand, 224 - 470
Target Start/End: Original strand, 44498493 - 44498740
Alignment:
Q  224 gagttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttattcnnnnnnn-tccttgactgttaactttaaccc 322  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||        || ||||| ||||||||||||      
T  44498493 gagttttcgttttggtcccataactcttaaaatcatcattttggtccctcaacttttgctctgttattcaaaaaaagtcattgacggttaactttaactt 44498592  T
Q  323 taaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttgannnnnnnncttaaaagaggaccat 422  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||| ||||||    
T  44498593 taaatgtctatggtggatcaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttgattttttttcttaaaagatgaccat 44498692  T
Q  423 tagattacgcatgtctattttatcttatgatgtatcaccaacgcctaa 470  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||    
T  44498693 tagattacgcatgtctattttatcttaggatgtatcaccaacacctaa 44498740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 148; E-Value: 2e-77
Query Start/End: Original strand, 17 - 224
Target Start/End: Complemental strand, 51515099 - 51514889
Alignment:
Q  17 acatactatatgcaaggtttgaacttaaattccggacaccacaacaacaacnnnnnnn---tgaccttattttgcacgctaaacatgtttccactaggcc 113  Q
    ||||||||||||||| ||||||||||||| |||||||||||||| || ||           ||||||||||||||| |||||||||||||||||||||||    
T  51515099 acatactatatgcaaagtttgaacttaaactccggacaccacaaaaaaaaaaaaaaaaaattgaccttattttgcaggctaaacatgtttccactaggcc 51515000  T
Q  114 aaacccattcgtgaagtacacatttatattgataaaaaacggtatgttattttacaaaatgattgaaaattatgatataaagtataatataatgtattca 213  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51514999 aaacccattcgtgaagtacacatttatattgataaaaaacgatatgttattttacaaaatgattgaaaattatgatataaagtataatataatgtattca 51514900  T
Q  214 taaatttattg 224  Q
    |||||||||||    
T  51514899 taaatttattg 51514889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 225 - 398
Target Start/End: Original strand, 56085381 - 56085554
Alignment:
Q  225 agttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttattcnnnnnnntccttgactgttaactttaacccta 324  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||||||  |||||| ||||||||       |||||| |||||||||||||||| |    
T  56085381 agttttcattttggtctcataagtcttaaaatcatcattttggtccctcaatgtttgcttcgttattcaatttggtccttggctgttaactttaacccca 56085480  T
Q  325 aatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  56085481 aatgtctatggtggactaaccttaagagtggtccaccatagatcctattaattattttaatttaaaccgtttga 56085554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 88; E-Value: 1e-41
Query Start/End: Original strand, 226 - 398
Target Start/End: Original strand, 26629826 - 26629997
Alignment:
Q  226 gttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttattcnnnnnnntccttgactgttaactttaaccctaa 325  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||| ||       ||| |||| |||||||||||||| ||    
T  26629826 gttttcattttggtcccataactcataaaatcaacattttggtccctcaacgtttgctccgttaatcaaaaaggtccatgacggttaactttaaccccaa 26629925  T
Q  326 atgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    |||| ||||||  ||||| ||||||||||||||||||||| |||||||||||||||||||  |||| ||||||    
T  26629926 atgtttatggtgaaccaa-cttaagagtggtccaccataggtcctattaattattttaatgtaaactgtttga 26629997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 227 - 392
Target Start/End: Original strand, 4871530 - 4871695
Alignment:
Q  227 ttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttattcnnnnnnntccttgactgttaactttaaccct-aa 325  Q
    |||||||||||||| ||||| |||||||||||||| ||| |||| ||||  |||||||||||||||       |||| ||| ||||||||||||||| ||    
T  4871530 ttttcattttggtctcataagtcttaaaatcatcaatttagtccttcaatgtttgctccgttattcaaaaagatcct-gaccgttaactttaaccctcaa 4871628  T
Q  326 atgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaacc 392  Q
    ||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||| |||||    
T  4871629 atgtctatggtggaccaacctaaagagtggtccaccgtagatcctattaattattttaatttaaacc 4871695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 80; E-Value: 6e-37
Query Start/End: Original strand, 226 - 398
Target Start/End: Original strand, 1519846 - 1520017
Alignment:
Q  226 gttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttattcnnnnnnntccttgactgttaactttaaccctaa 325  Q
    ||||||||||||||||||||| || |||||||| ||| ||||||||||||| ||||||| |||| ||       | | ||||||||||||||||||| ||    
T  1519846 gttttcattttggtcccataattcgtaaaatcaacatattggtccctcaacatttgctctgttagtcaaaaaggtacctgactgttaactttaaccccaa 1519945  T
Q  326 atgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    |||| ||||||||| || | |||| |||| ||||||||||||||||||||||||||||||| |||||||||||    
T  1519946 atgtttatggtagatcacctttaa-agtgatccaccatagatcctattaattattttaatttaaaccgtttga 1520017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 80; E-Value: 6e-37
Query Start/End: Original strand, 226 - 449
Target Start/End: Original strand, 36845444 - 36845667
Alignment:
Q  226 gttttcattttggtcccataactcttaaaatcat-cattttggtccctcaacttttgctccgttattcnnnnnnntccttgactgttaactttaacccta 324  Q
    ||||||||||| || ||||||||| ||||||||  ||||||||| ||||||| |||||||||||| ||       ||| |||| || |||||||||||||    
T  36845444 gttttcattttagttccataactcataaaatcaaacattttggttcctcaacgtttgctccgttaatcaaagaggtccctgacggtcaactttaacccta 36845543  T
Q  325 aatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttgannnnnnnncttaaaagaggaccatta 424  Q
    ||||| |||| ||||||||| |||||||||||||||||||| |||||||||||||||||||  |||| ||||||         |||||||| |||||||     
T  36845544 aatgtttatgatagaccaacattaagagtggtccaccataggtcctattaattattttaatgtaaactgtttgatatttttt-ttaaaagatgaccattg 36845642  T
Q  425 gattacgcatgtctattttatctta 449  Q
    ||||||||| || ||||||||||||    
T  36845643 gattacgcaggtgtattttatctta 36845667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 77; E-Value: 4e-35
Query Start/End: Original strand, 225 - 398
Target Start/End: Complemental strand, 19750375 - 19750203
Alignment:
Q  225 agttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttattcnnnnnnntccttgactgttaactttaacccta 324  Q
    ||||||||||||| |||||||| | |||||||||||||||| |||| |||||||||||| |||||||        || | ||| ||||||||||||| ||    
T  19750375 agttttcattttgatcccataagttttaaaatcatcattttagtccttcaacttttgcttcgttattaaaaaaagtcat-gaccgttaactttaacctta 19750277  T
Q  325 aatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    |||||||||||| ||| || ||||| ||| |||||||||||||||||||||||||||||||| ||| |||||||    
T  19750276 aatgtctatggtggacaaatcttaaaagttgtccaccatagatcctattaattattttaatttaaatcgtttga 19750203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 77; E-Value: 4e-35
Query Start/End: Original strand, 225 - 398
Target Start/End: Original strand, 19789431 - 19789603
Alignment:
Q  225 agttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttattcnnnnnnntccttgactgttaactttaacccta 324  Q
    ||||||||||||| |||||||| | |||||||||||||||| |||| |||||||||||| |||||||        || | ||| ||||||||||||| ||    
T  19789431 agttttcattttgatcccataagttttaaaatcatcattttagtccttcaacttttgcttcgttattaaaaaaagtcat-gaccgttaactttaacctta 19789529  T
Q  325 aatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    |||||||||||| ||| || ||||| ||| |||||||||||||||||||||||||||||||| ||| |||||||    
T  19789530 aatgtctatggtggacaaatcttaaaagttgtccaccatagatcctattaattattttaatttaaatcgtttga 19789603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 326 - 456
Target Start/End: Original strand, 7707725 - 7707854
Alignment:
Q  326 atgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttgannnnnnnncttaaaagaggaccattag 425  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||         ||||||||| |||||| |    
T  7707725 atgtctttggtagaccaaccttaagagtggtccaccatagatcctattaattattttaatttcaaccgtttgattttttct-ttaaaagagaaccattgg 7707823  T
Q  426 attacgcatgtctattttatcttatgatgta 456  Q
    |||| ||| ||||||||||||||| ||||||    
T  7707824 attaggcaggtctattttatcttacgatgta 7707854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 304 - 398
Target Start/End: Complemental strand, 52138799 - 52138702
Alignment:
Q  304 tgactgttaactttaaccc-taaatgtct--atggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    ||||||||||||||||||| |||||||||  ||||||||||||| |||||| |||||||||||||||||||||||||||| ||||| |||||||||||    
T  52138799 tgactgttaactttaacccctaaatgtctctatggtagaccaactttaagaatggtccaccatagatcctattaattattctaatttaaaccgtttga 52138702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 326 - 398
Target Start/End: Complemental strand, 27850918 - 27850846
Alignment:
Q  326 atgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  27850918 atgtctatggtggaccaaccttaaaagtggtccaccatagatcctattaattattttaatttaaaccgtttga 27850846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 309 - 398
Target Start/End: Original strand, 52239994 - 52240085
Alignment:
Q  309 gttaactttaaccctaa--atgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    |||||||||||||| ||  ||||||||||| |||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||||    
T  52239994 gttaactttaacccaaatgatgtctatggtggaccaaccttaagagtggtccaccatagatcctattaatatttttaatttaaaccgtttga 52240085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 224 - 289
Target Start/End: Complemental strand, 44500067 - 44500002
Alignment:
Q  224 gagttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgtta 289  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  44500067 gagttttcgttttggtcccataactcttaaaatcatcattttggtcccttaacttttgctccgtta 44500002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 326 - 470
Target Start/End: Complemental strand, 2312461 - 2312319
Alignment:
Q  326 atgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttgannnnnnnncttaaaagaggaccattag 425  Q
    ||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||| |||| ||||||         | ||||||| |||||| |    
T  2312461 atgtctatggtggaccaatcttaaaagtggtccaccatagatcctattaattattttaatttaaactgtttgattttttt--taaaaagagaaccattgg 2312364  T
Q  426 attacgcatgtctattttatcttatgatgtatcaccaacgcctaa 470  Q
    ||||  || | |||||||||||||||||||| ||||||| |||||    
T  2312363 attagacaggcctattttatcttatgatgtaccaccaacacctaa 2312319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 300 - 398
Target Start/End: Original strand, 13165604 - 13165702
Alignment:
Q  300 tccttgactgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    |||||||||||||| ||||||   |||| |||||||| |||||||||||||||||||||||||||||    |||||||||||||||| |||||||||||    
T  13165604 tccttgactgttaagtttaacttcaaatttctatggtggaccaaccttaagagtggtccaccatagacttcattaattattttaatttaaaccgtttga 13165702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 306 - 398
Target Start/End: Complemental strand, 26496311 - 26496218
Alignment:
Q  306 actgttaactttaaccct-aaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    |||||||||||||||||  ||||||||||||| |||| || |||| | |||||||||||||||||||||||||||| ||||| |||||||||||    
T  26496311 actgttaactttaacccccaaatgtctatggtggaccgactttaaaaatggtccaccatagatcctattaattattctaatttaaaccgtttga 26496218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 324 - 449
Target Start/End: Complemental strand, 49896567 - 49896442
Alignment:
Q  324 aaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttgannnnnnnncttaaaagaggaccatt 423  Q
    ||||| ||||||| ||||||||| |||||||||||||  |||||||| ||||||||||||||| |||||||||||         ||||||||| ||||||    
T  49896567 aaatggctatggtggaccaacctaaagagtggtccactgtagatcctgttaattattttaatttaaaccgtttgatattttttattaaaagagaaccatt 49896468  T
Q  424 agattacgcatgtctattttatctta 449  Q
    |||| | ||||||||||| |||||||    
T  49896467 agatcatgcatgtctattgtatctta 49896442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 306 - 381
Target Start/End: Original strand, 40723342 - 40723417
Alignment:
Q  306 actgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattt 381  Q
    |||||||| |||||||  |||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  40723342 actgttaagtttaacctcaaatgtatatggtggaccaaccttaagagtggtctaccatagatcctattaattattt 40723417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 326 - 392
Target Start/End: Original strand, 11968647 - 11968713
Alignment:
Q  326 atgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaacc 392  Q
    ||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  11968647 atgtctatgatggaccaaccttaagagtggtccatcatagatcctattaattattttaatttaaacc 11968713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 327 - 397
Target Start/End: Complemental strand, 15450054 - 15449984
Alignment:
Q  327 tgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttg 397  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||  |||||||| |||| |||||    
T  15450054 tgtctatcgtggaccaaccttaagagtggtccaccatagatcctattaatatttttaatttaaactgtttg 15449984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 300 - 366
Target Start/End: Complemental strand, 53435760 - 53435694
Alignment:
Q  300 tccttgactgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccataga 366  Q
    |||||||| ||||| ||||||  ||||||||||||||||||||||||||||||||||||||| ||||    
T  53435760 tccttgacggttaagtttaactttaaatgtctatggtagaccaaccttaagagtggtccaccgtaga 53435694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 225 - 278
Target Start/End: Complemental strand, 4872313 - 4872260
Alignment:
Q  225 agttttcattttggtcccataactcttaaaatcatcattttggtccctcaactt 278  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  4872313 agttttcattttggtcccataagtcttaaaatcatcaatttggtccctcaactt 4872260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 326 - 398
Target Start/End: Original strand, 1794548 - 1794620
Alignment:
Q  326 atgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    |||| |||||| ||||||||||||||||||||||||||||| | |||||| | |||||||| |||||||||||    
T  1794548 atgtatatggtggaccaaccttaagagtggtccaccatagaccttattaaattttttaatttaaaccgtttga 1794620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 289
Target Start/End: Complemental strand, 1521275 - 1521212
Alignment:
Q  226 gttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgtta 289  Q
    |||||||||||| |||||||| || |||||||| ||||||||||||||||||||| ||||||||    
T  1521275 gttttcattttgatcccataattcgtaaaatcaacattttggtccctcaacttttactccgtta 1521212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 225 - 292
Target Start/End: Complemental strand, 23104089 - 23104022
Alignment:
Q  225 agttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttattc 292  Q
    |||||||||||||||| ||||| |||||||||||||| |   ||||||||||||||||||||||||||    
T  23104089 agttttcattttggtctcataagtcttaaaatcatcaatcgagtccctcaacttttgctccgttattc 23104022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 225 - 292
Target Start/End: Original strand, 45535080 - 45535147
Alignment:
Q  225 agttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttattc 292  Q
    |||||||||||||||||||||| |||||||||||||| |   |||||||||||||||||| |||||||    
T  45535080 agttttcattttggtcccataagtcttaaaatcatcaatcgagtccctcaacttttgctctgttattc 45535147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 226 - 288
Target Start/End: Complemental strand, 36846640 - 36846578
Alignment:
Q  226 gttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgtt 288  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||   ||||||||||||    
T  36846640 gttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgtt 36846578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 338 - 398
Target Start/End: Original strand, 7053324 - 7053384
Alignment:
Q  338 gaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    |||||| |||||||||| |||||||||||||||||||||| |||||||| ||| |||||||    
T  7053324 gaccaatcttaagagtgatccaccatagatcctattaatttttttaatttaaatcgtttga 7053384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 309 - 398
Target Start/End: Complemental strand, 28590904 - 28590813
Alignment:
Q  309 gttaactttaaccctaaatgtctat--ggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    ||||| |||||||||||||||||||  |||  |||||| ||||||||| | || |||||||||||||||||||||||||  |||| ||||||    
T  28590904 gttaaatttaaccctaaatgtctatatggtgaaccaactttaagagtgattcatcatagatcctattaattattttaatataaactgtttga 28590813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 300 - 384
Target Start/End: Complemental strand, 56157503 - 56157419
Alignment:
Q  300 tccttgactgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaa 384  Q
    ||||||| | ||||||||||||  ||||||||   || |||||| |||||||||| |||||||||||||||||||||| ||||||    
T  56157503 tccttgaatattaactttaacctcaaatgtctcaagtggaccaatcttaagagtgttccaccatagatcctattaatttttttaa 56157419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 309 - 376
Target Start/End: Original strand, 6348272 - 6348339
Alignment:
Q  309 gttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaat 376  Q
    ||||| |||||||  ||||||||||||| |||||||||||||||||||||||| |||| | |||||||    
T  6348272 gttaagtttaacctcaaatgtctatggtggaccaaccttaagagtggtccaccgtagaccttattaat 6348339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 308 - 386
Target Start/End: Complemental strand, 7708788 - 7708710
Alignment:
Q  308 tgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaatt 386  Q
    ||||||||||||| |||||| |||||||| |||||||||||| |||||| || |||||| | |||||||| | ||||||    
T  7708788 tgttaactttaactctaaatatctatggtggaccaaccttaaaagtggtacatcatagaccttattaattttgttaatt 7708710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 305 - 366
Target Start/End: Original strand, 52963682 - 52963743
Alignment:
Q  305 gactgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccataga 366  Q
    |||||||||||||||| | ||||||||||||| ||||| |||||| ||||||||| ||||||    
T  52963682 gactgttaactttaactccaaatgtctatggtggaccagccttaaaagtggtccatcataga 52963743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 292
Target Start/End: Original strand, 49895074 - 49895142
Alignment:
Q  225 agttttcattttggtcccataactcttaaaatcatcattttggt-ccctcaacttttgctccgttattc 292  Q
    |||||||||||||||||||||| |  || ||| ||||||||||| ||||||||||||||||||| ||||    
T  49895074 agttttcattttggtcccataagttctataattatcattttggtcccctcaacttttgctccgtcattc 49895142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 386
Target Start/End: Original strand, 34326843 - 34326922
Alignment:
Q  307 ctgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaatt 386  Q
    ||||||| ||||| || |||| |  ||||| ||||||| |||||||||||| || |||||||||||||||||||| ||||    
T  34326843 ctgttaaatttaatcccaaatatacatggtggaccaactttaagagtggtctactatagatcctattaattatttaaatt 34326922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 278
Target Start/End: Complemental strand, 56086631 - 56086580
Alignment:
Q  227 ttttcattttggtcccataactcttaaaatcatcattttggtccctcaactt 278  Q
    ||||||||||||||| |||| ||||||||| ||||||||||| |||||||||    
T  56086631 ttttcattttggtcctataagtcttaaaattatcattttggttcctcaactt 56086580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 324 - 366
Target Start/End: Original strand, 4714153 - 4714195
Alignment:
Q  324 aaatgtctatggtagaccaaccttaagagtggtccaccataga 366  Q
    ||||||||||||| || ||||||||||||||||||||||||||    
T  4714153 aaatgtctatggtggatcaaccttaagagtggtccaccataga 4714195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 300 - 366
Target Start/End: Complemental strand, 13166776 - 13166710
Alignment:
Q  300 tccttgactgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccataga 366  Q
    |||||||||||||| ||||||   ||||||||||| | |||||||| |||||||| |||||||||||    
T  13166776 tccttgactgttaagtttaacttcaaatgtctatgatggaccaaccgtaagagtgatccaccataga 13166710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 308 - 386
Target Start/End: Original strand, 22069352 - 22069430
Alignment:
Q  308 tgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaatt 386  Q
    |||||||||||||   ||||||||||||| ||| |||||||| |||||| |||||||||  ||||||||  ||||||||    
T  22069352 tgttaactttaacttcaaatgtctatggtggacgaaccttaaaagtggttcaccatagactctattaatatttttaatt 22069430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 289
Target Start/End: Complemental strand, 26631299 - 26631237
Alignment:
Q  227 ttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgtta 289  Q
    |||||||||||||| |||||||| |||||||| ||||||||| ||||   |||||||||||||    
T  26631299 ttttcattttggtctcataactcgtaaaatcaacattttggttcctcttgttttgctccgtta 26631237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 304 - 398
Target Start/End: Original strand, 53432175 - 53432269
Alignment:
Q  304 tgactgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    |||| ||||| |||||||| |||||||||||||  |||||| ||||||||||  ||||||| | | |||||||| ||| ||||  ||||||||||    
T  53432175 tgacggttaagtttaaccccaaatgtctatggtgaaccaactttaagagtggctcaccatacaccttattaattttttcaattttaaccgtttga 53432269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 449
Target Start/End: Original strand, 1829866 - 1830007
Alignment:
Q  305 gactgttaacttt-aaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttgannnnn 403  Q
    ||||||||||||| ||| |||||||||||| || ||||||| |||| ||||||||| | |||| | |||||||| | |||||   |||| |||||         
T  1829866 gactgttaacttttaactctaaatgtctatcgtggaccaactttaaaagtggtccatcgtagaccttattaattttattaatcttaaccatttgattttt 1829965  T
Q  404 nnncttaaaagaggaccattagattacgcatgtctattttatctta 449  Q
        ||||| |||||||||||||||||| | |||||||||||||||    
T  1829966 ----ttaaaggaggaccattagattacgtaggtctattttatctta 1830007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 353 - 398
Target Start/End: Complemental strand, 23103962 - 23103918
Alignment:
Q  353 tggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||    
T  23103962 tggtccaccatagatcctattaatt-ttttaatttaaaccgtttga 23103918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 411 - 456
Target Start/End: Original strand, 27847895 - 27847940
Alignment:
Q  411 aaagaggaccattagattacgcatgtctattttatcttatgatgta 456  Q
    |||||||||| ||||||||| ||||||||||||||||||| |||||    
T  27847895 aaagaggaccgttagattacacatgtctattttatcttataatgta 27847940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 326 - 395
Target Start/End: Complemental strand, 42810184 - 42810115
Alignment:
Q  326 atgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtt 395  Q
    |||||||||||  ||||| ||||||||| |||||||||||| | |||||| | |||||||| ||||||||    
T  42810184 atgtctatggtgaaccaatcttaagagtagtccaccatagaccttattaaattttttaatttaaaccgtt 42810115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 377
Target Start/End: Complemental strand, 393640 - 393568
Alignment:
Q  305 gactgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaatt 377  Q
    |||||||||||||||  |||||||| ||| || |||||||||||| ||||||||| | |||| | ||||||||    
T  393640 gactgttaactttaattctaaatgtttatagtggaccaaccttaaaagtggtccatcgtagaccttattaatt 393568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 346 - 386
Target Start/End: Original strand, 23202002 - 23202042
Alignment:
Q  346 ttaagagtggtccaccatagatcctattaattattttaatt 386  Q
    ||||||||||| |||||||| ||||||||||||||||||||    
T  23202002 ttaagagtggtacaccataggtcctattaattattttaatt 23202042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 288
Target Start/End: Original strand, 26491458 - 26491514
Alignment:
Q  232 attttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgtt 288  Q
    ||||||||| |||||||| |||||||| ||||||||||||||   ||||||||||||    
T  26491458 attttggtctcataactcgtaaaatcaacattttggtccctcttattttgctccgtt 26491514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 386
Target Start/End: Original strand, 33231506 - 33231584
Alignment:
Q  308 tgttaactttaaccct-aaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaatt 386  Q
    |||||| ||||||||| ||||||||||||| ||| |||||||  |||||||||||||| |  ||||||||| ||||||||    
T  33231506 tgttaagtttaaccctcaaatgtctatggtggacaaaccttagaagtggtccaccataaactctattaatt-ttttaatt 33231584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 398
Target Start/End: Original strand, 36243636 - 36243726
Alignment:
Q  308 tgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    ||||||||||||||  ||||||||   || |||||| |||||||||| |||||||||||| ||||| | | |||||| |  ||||||||||    
T  36243636 tgttaactttaacctcaaatgtcttaagtggaccaatcttaagagtgttccaccatagattctattgaattttttaactttaaccgtttga 36243726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 310 - 386
Target Start/End: Complemental strand, 8682845 - 8682769
Alignment:
Q  310 ttaactttaaccctaaatgtctatggtagaccaac-cttaagagtggtccaccatagatcctattaattattttaatt 386  Q
    |||| |||||| | ||||||||||||| ||| ||  ||||||||||||||| |||||||| |||||||| ||||||||    
T  8682845 ttaagtttaacaccaaatgtctatggtggactaaatcttaagagtggtccatcatagatcatattaatt-ttttaatt 8682769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 275
Target Start/End: Original strand, 23102617 - 23102666
Alignment:
Q  226 gttttcattttggtcccataactcttaaaatcatcattttggtccctcaa 275  Q
    |||||| |||||||||||||| |||||||||||||| |  ||||||||||    
T  23102617 gttttcgttttggtcccataagtcttaaaatcatcaatcgggtccctcaa 23102666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #56
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 353 - 398
Target Start/End: Original strand, 45535207 - 45535251
Alignment:
Q  353 tggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    ||||||||||||||||||||||||| |||||||| |||| ||||||    
T  45535207 tggtccaccatagatcctattaatt-ttttaatttaaactgtttga 45535251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #57
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 275
Target Start/End: Complemental strand, 45536554 - 45536505
Alignment:
Q  226 gttttcattttggtcccataactcttaaaatcatcattttggtccctcaa 275  Q
    |||||| |||||||||||||| |||||||||||||| |  ||||||||||    
T  45536554 gttttcgttttggtcccataagtcttaaaatcatcaatcgggtccctcaa 45536505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 215; Significance: 1e-117; HSPs: 48)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 857 - 1111
Target Start/End: Complemental strand, 24192119 - 24191866
Alignment:
Q  857 aaacattcaatacaatagtaactagaaacaacagagtatcaaatccaaattatgaacaaaccaagacaagaacagaggtgcagggtggcgctgaagggat 956  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||    
T  24192119 aaacattcaatacaatagtaactagaaacaacagagtatcaaatccaaattatgaacaaaccaagataagaacagaggtgcagggcgacgctgaagggat 24192020  T
Q  957 gggcgaagactataggaatggtggtggttgcatgatggcggcgtggcgcaacggagaacgaccctttcgtggaaggaagatcagttttgaagagaaaatt 1056  Q
    ||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  24192019 gggcgaaaactataggaatggtggtgg-tgcatgacggcggcgtggcgcaacggagaacgaccctttcgtggaagggagatcagttttgaagagaaaatt 24191921  T
Q  1057 gatggacagattcgcacaggtgaccttgcttctccttccggcgttggttttgctc 1111  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  24191920 gatggacagattcgcacaggagacctttcttctccttccggcgttggttttgctc 24191866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 168; E-Value: 2e-89
Query Start/End: Original strand, 575 - 762
Target Start/End: Complemental strand, 24192398 - 24192211
Alignment:
Q  575 cctaagtaaattcatatatgatattcatctcaattttctctttcaacatgattctgatttagaacatgaatgaattttagagatagagaaaataatttag 674  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  24192398 cctaagtaaattcatatatgatattcatctcaattttctctgtcaacatgattctgagttagaacatgaatgaattttagagatagagaaaataatttag 24192299  T
Q  675 aaaatcataacccattgaattgattttcattctcgtcaatatcgatacccatttaactttcttttcattataccacaaggctaaaaca 762  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||    
T  24192298 aaaatcataacccattgaattgattttcattctcgtcaatgttgatacccatttaactttcttttaattataccacaaggctaaaaca 24192211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 166; E-Value: 3e-88
Query Start/End: Original strand, 224 - 470
Target Start/End: Complemental strand, 24192746 - 24192500
Alignment:
Q  224 gagttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttattcnnnnnnntccttgactgttaactttaaccct 323  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||       ||||||||||||||||||||||||    
T  24192746 gagttttcgttttggtcccataactcttaaaatcatcattttggtctctcaacttttactccgttaatcaaaaaggtccttgactgttaactttaaccct 24192647  T
Q  324 aaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttgannnnnnnncttaaaagaggaccatt 423  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||| ||||||    
T  24192646 aaatgtctatggtggaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttgattttttttcttaaaagagaaccatt 24192547  T
Q  424 agattacgcatgtctattttatcttatgatgtatcaccaacgcctaa 470  Q
    |||||||||||||||||||||| ||| |||||||||||||| |||||    
T  24192546 agattacgcatgtctattttattttaggatgtatcaccaacacctaa 24192500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 226 - 457
Target Start/End: Complemental strand, 20180755 - 20180524
Alignment:
Q  226 gttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttattcnnnnnnntccttgactgttaactttaaccctaa 325  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||       ||| ||||| ||||||||||||||||    
T  20180755 gttttcattttggtctcataactcttaaaattatcattttggtccctcgacttttgctccgttattcaaaaaggtccatgactattaactttaaccctaa 20180656  T
Q  326 atgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttgannnnnnnncttaaaagaggaccattag 425  Q
    |||||||| || ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||    
T  20180655 atgtctatagtggactaacattaagagtggtccaccatagatcctattaattattttaattaaaaccgtttgatcttttttcttaaaagaggaccattag 20180556  T
Q  426 attacgcatgtctattttatcttatgatgtat 457  Q
    ||||| |||||||||||||||||| |||||||    
T  20180555 attacacatgtctattttatcttaggatgtat 20180524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 222 - 398
Target Start/End: Complemental strand, 10669530 - 10669354
Alignment:
Q  222 ttgagttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttattcnnnnnnntccttgactgttaactttaacc 321  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||| |||||||||||||||       |||||| |||||||||||||||    
T  10669530 ttgagttttcattttggtcccataaatcttaaaatcaacattttggtacctcaacgtttgctccgttattcaaaaaagtccttggctgttaactttaacc 10669431  T
Q  322 ctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
      |||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||    
T  10669430 tcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcctattaaatattttaatttaaaccgattga 10669354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 88; E-Value: 1e-41
Query Start/End: Original strand, 226 - 398
Target Start/End: Complemental strand, 31845875 - 31845704
Alignment:
Q  226 gttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttattcnnnnnnntccttgactgttaactttaaccctaa 325  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||| ||       ||| | || |||||||||||||| ||    
T  31845875 gttttcattttggtcccataactcataaaatcaacattttggtccctcaacgtttgctccgttaatcaaaaaggtccctaacggttaactttaaccccaa 31845776  T
Q  326 atgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    |||||||||||  |||||| |||||||||||||||||||| |||||||||||||||||||  |||| ||||||    
T  31845775 atgtctatggtgaaccaac-ttaagagtggtccaccataggtcctattaattattttaatgtaaactgtttga 31845704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 80; E-Value: 6e-37
Query Start/End: Original strand, 226 - 398
Target Start/End: Original strand, 43202131 - 43202303
Alignment:
Q  226 gttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttattcnnnnnnntccttgactgttaactttaaccctaa 325  Q
    ||||||||||| |||||||||||| |||||||| ||||||||||||||||| ||||| |||||| ||       ||| |||| ||||| |||||||| ||    
T  43202131 gttttcattttagtcccataactcgtaaaatcaacattttggtccctcaacgtttgcaccgttagtcaaaaaggtccctgaccgttaattttaaccccaa 43202230  T
Q  326 atgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    || ||||| || || |||||||||||||||||||||||||||||||||| |||||| |||| |||| ||||||    
T  43202231 atatctatagtggatcaaccttaagagtggtccaccatagatcctattagttatttaaatttaaactgtttga 43202303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 308 - 456
Target Start/End: Original strand, 17455164 - 17455311
Alignment:
Q  308 tgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttgannnnnnnnc 407  Q
    |||||||||||||   |||| |||||| |||||||| ||||| |||||||||||||||||| |||||||||||||||||  |||||||| |             
T  17455164 tgttaactttaacttcaaatatctatgctagaccaatcttaaaagtggtccaccatagatcttattaattattttaatttgaaccgttttatctatttt- 17455262  T
Q  408 ttaaaagaggaccattagattacgcatgtctattttatcttatgatgta 456  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  17455263 ttaaaagaggaccattagattacgcaggtctattttatcttacgatgta 17455311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 326 - 398
Target Start/End: Complemental strand, 32798512 - 32798440
Alignment:
Q  326 atgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  32798512 atgtctatggtggatcaaccttaagagtggtccaccatagatcctattaattattttaatttaaaccgtttga 32798440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 225 - 332
Target Start/End: Complemental strand, 39174809 - 39174702
Alignment:
Q  225 agttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttattcnnnnnnntccttgactgttaactttaacccta 324  Q
    ||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||       |||||  ||||||||||||||  ||    
T  39174809 agttttcattttggtcctataagttttaaaatcatcattttggtccctcaacttttgctccgttattcaaaaaggtccttcgctgttaactttaacttta 39174710  T
Q  325 aatgtcta 332  Q
    ||||||||    
T  39174709 aatgtcta 39174702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 304 - 377
Target Start/End: Complemental strand, 42872193 - 42872120
Alignment:
Q  304 tgactgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaatt 377  Q
    |||| |||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  42872193 tgacggttaactttaacctcaaatgtctatggtagaccaaccttaagagtggtctaccatagatcctattaatt 42872120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 326 - 470
Target Start/End: Complemental strand, 32695254 - 32695112
Alignment:
Q  326 atgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttgannnnnnnncttaaaagaggaccattag 425  Q
    |||||||||||  ||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||         ||||||||| |||||| |    
T  32695254 atgtctatggtgaaccaatcttaagattggtccaccatagatcctattaattattttaatttaaaccgtttgattttttt--ttaaaagagaaccattgg 32695157  T
Q  426 attacgcatgtctattttatcttatgatgtatcaccaacgcctaa 470  Q
    ||||  || ||||||||||||||| ||| || ||||||| |||||    
T  32695156 attagacaagtctattttatcttacgatataccaccaacacctaa 32695112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 225 - 386
Target Start/End: Complemental strand, 42362832 - 42362672
Alignment:
Q  225 agttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttattcnnnnnnntccttgactgttaactttaacccta 324  Q
    ||||||||||||||| | |||||||  |||||||  | ||||||| ||||||||||||||||||||||       ||   |||||||||||||||  | |    
T  42362832 agttttcattttggttctataactcgaaaaatcaatactttggtcactcaacttttgctccgttattcaaaaaggtcaacgactgttaactttaattcca 42362733  T
Q  325 aatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaatt 386  Q
     ||||||||||| ||||||| ||||||||||| || ||||||||||||||||| ||||||||    
T  42362732 gatgtctatggtggaccaacattaagagtggttcatcatagatcctattaatt-ttttaatt 42362672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 309 - 381
Target Start/End: Original strand, 42877736 - 42877808
Alignment:
Q  309 gttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattt 381  Q
    |||||||||||||| |||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  42877736 gttaactttaaccccaaatgtgtatggtggaccaaccttaagaatggtccaccatagatcctattaattattt 42877808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 304 - 398
Target Start/End: Complemental strand, 9854883 - 9854788
Alignment:
Q  304 tgactgttaactttaaccct-aaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    |||| ||||||||||||||  ||||||||||||| ||||||| |||||||||||||||||||||||||||||||| || ||||| ||||| |||||    
T  9854883 tgaccgttaactttaacccccaaatgtctatggtggaccaactttaagagtggtccaccatagatcctattaattcttctaatttaaaccatttga 9854788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 225 - 332
Target Start/End: Original strand, 35799485 - 35799592
Alignment:
Q  225 agttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttattcnnnnnnntccttgactgttaactttaacccta 324  Q
    ||||||||||||||||  |||| ||||||||| |||||||||||||||||||||||||||||||||||       |||||  ||||||||||||||  ||    
T  35799485 agttttcattttggtcttataagtcttaaaattatcattttggtccctcaacttttgctccgttattcaaaaaagtccttcgctgttaactttaacttta 35799584  T
Q  325 aatgtcta 332  Q
    ||||||||    
T  35799585 aatgtcta 35799592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 310 - 386
Target Start/End: Original strand, 38696427 - 38696503
Alignment:
Q  310 ttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaatt 386  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||| || |||||    
T  38696427 ttaagtttaaccctaaatgtctatggtagaccaaccttaaaagtggtccaccatagatctaattaatttttataatt 38696503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 224 - 288
Target Start/End: Original strand, 39173149 - 39173213
Alignment:
Q  224 gagttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgtt 288  Q
    |||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||    
T  39173149 gagttttcattttggtcctataagtcttaaaatcgtcattttggtccctcaacttttgctccgtt 39173213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 224 - 332
Target Start/End: Original strand, 32552329 - 32552437
Alignment:
Q  224 gagttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttattcnnnnnnntccttgactgttaactttaaccct 323  Q
    |||||||||||||| ||| |||| |||||||||| |||||||||||||||||||||||||||||| |||       |||||  ||||||||||||||  |    
T  32552329 gagttttcattttgatcctataagtcttaaaatcgtcattttggtccctcaacttttgctccgttgttcaaaaaggtccttcgctgttaactttaacttt 32552428  T
Q  324 aaatgtcta 332  Q
    |||||||||    
T  32552429 aaatgtcta 32552437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 305 - 398
Target Start/End: Original strand, 42098675 - 42098771
Alignment:
Q  305 gactgttaactttaaccctaaatg---tctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    ||||||||| |||||||| |||||   ||| |||| |||||||||||| |||||||||||||||||||||||||||| |||||||  ||||||||||    
T  42098675 gactgttaattttaaccccaaatgatgtctttggtggaccaaccttaaaagtggtccaccatagatcctattaattactttaatttcaaccgtttga 42098771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 225 - 278
Target Start/End: Original strand, 7844745 - 7844798
Alignment:
Q  225 agttttcattttggtcccataactcttaaaatcatcattttggtccctcaactt 278  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7844745 agttttcattttggtcccataagtcttaaaatcatcattttggtccctcaactt 7844798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 224 - 289
Target Start/End: Original strand, 24191410 - 24191475
Alignment:
Q  224 gagttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgtta 289  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||    
T  24191410 gagttttcgttttggtcccataactcttaaaatcatcattttggtctcttaacttttgctctgtta 24191475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 224 - 288
Target Start/End: Complemental strand, 32553990 - 32553926
Alignment:
Q  224 gagttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgtt 288  Q
    |||||||||||||| ||| |||| |||||||||| ||||||||||||||||||||||||||||||    
T  32553990 gagttttcattttgatcctataagtcttaaaatcgtcattttggtccctcaacttttgctccgtt 32553926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 224 - 288
Target Start/End: Complemental strand, 35801062 - 35800998
Alignment:
Q  224 gagttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgtt 288  Q
    |||||||||||||||||| |||| |||||||||| ||||||| ||||||||||||||||||||||    
T  35801062 gagttttcattttggtcctataagtcttaaaatcgtcattttagtccctcaacttttgctccgtt 35800998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 303 - 377
Target Start/End: Original strand, 24305154 - 24305228
Alignment:
Q  303 ttgactgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaatt 377  Q
    |||| ||||||||||||||||||||||||||||| ||||||| ||||||||| || | | |||||||||||||||    
T  24305154 ttgattgttaactttaaccctaaatgtctatggtggaccaacattaagagtgatctatcttagatcctattaatt 24305228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 336 - 398
Target Start/End: Complemental strand, 40437567 - 40437505
Alignment:
Q  336 tagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| ||||||    
T  40437567 tagaccaaccttaaaagtggtccaccgtagatcctattaattattttaatttaaactgtttga 40437505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 224 - 289
Target Start/End: Original strand, 10668002 - 10668067
Alignment:
Q  224 gagttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgtta 289  Q
    ||||||||||||||||||||||| | ||||||||| ||||||||||||||||| ||||||| ||||    
T  10668002 gagttttcattttggtcccataaattttaaaatcagcattttggtccctcaacatttgctctgtta 10668067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 326 - 398
Target Start/End: Complemental strand, 45281169 - 45281097
Alignment:
Q  326 atgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    ||||||| ||| |||||||||||||||||||| |||||| |||||||||||  |||||||| |||||||||||    
T  45281169 atgtctacggtggaccaaccttaagagtggtctaccataaatcctattaatatttttaatttaaaccgtttga 45281097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 331 - 381
Target Start/End: Complemental strand, 42878806 - 42878756
Alignment:
Q  331 tatggtagaccaaccttaagagtggtccaccatagatcctattaattattt 381  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  42878806 tatggtggaccaaccttaagtgtggtccaccatagatcctattaattattt 42878756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 310 - 398
Target Start/End: Complemental strand, 14840896 - 14840808
Alignment:
Q  310 ttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    |||| |||||||  ||||||||||||| ||||||| |||| |||| |||||||||| || |||||| | |||||||| |||||||||||    
T  14840896 ttaagtttaaccacaaatgtctatggtggaccaacattaaaagtgatccaccatagttcttattaaattttttaatttaaaccgtttga 14840808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 308 - 398
Target Start/End: Original strand, 6397899 - 6397989
Alignment:
Q  308 tgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    |||||| |||||| | ||||  |||||||| ||||||||| | |||||||||||||||| | |||||||| |||||||| ||||| |||||    
T  6397899 tgttaaatttaactccaaataactatggtaaaccaacctttacagtggtccaccatagaccttattaatttttttaatttaaaccatttga 6397989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 225 - 278
Target Start/End: Complemental strand, 35070739 - 35070686
Alignment:
Q  225 agttttcattttggtcccataactcttaaaatcatcattttggtccctcaactt 278  Q
    ||||||||||||||||  |||| ||||||||||||||||||||| |||||||||    
T  35070739 agttttcattttggtcatataagtcttaaaatcatcattttggttcctcaactt 35070686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 346 - 398
Target Start/End: Original strand, 4810621 - 4810673
Alignment:
Q  346 ttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    |||||||||||||||||||||||||||||||  |||||||| |||| ||||||    
T  4810621 ttaagagtggtccaccatagatcctattaatatttttaatttaaactgtttga 4810673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 338 - 398
Target Start/End: Complemental strand, 13117601 - 13117541
Alignment:
Q  338 gaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    ||||||| |||| ||||||||| |||||||||||||||||||||||||   ||||||||||    
T  13117601 gaccaactttaaaagtggtccatcatagatcctattaattattttaatatcaaccgtttga 13117541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 304 - 368
Target Start/End: Original strand, 17701052 - 17701116
Alignment:
Q  304 tgactgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatc 368  Q
    |||| |||||||||||| |||||| |||||| | || |||||||| |||||||||||||||||||    
T  17701052 tgacggttaactttaactctaaatttctatgatggatcaaccttacgagtggtccaccatagatc 17701116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 398
Target Start/End: Complemental strand, 8571616 - 8571525
Alignment:
Q  307 ctgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    ||||||| |||||||| ||||||||||||| ||||||| |||| | |||||||||||| | | ||||||   |||||||| |||| ||||||    
T  8571616 ctgttaagtttaaccccaaatgtctatggtggaccaactttaaaaatggtccaccatataccttattaaactttttaatttaaactgtttga 8571525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 289
Target Start/End: Complemental strand, 24306206 - 24306143
Alignment:
Q  226 gttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgtta 289  Q
    |||||||||||||||||||||||| ||||||||  |||||||||| | ||| ||||| ||||||    
T  24306206 gttttcattttggtcccataactcgtaaaatcaatattttggtcctttaacgtttgccccgtta 24306143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 304 - 398
Target Start/End: Original strand, 42870925 - 42871022
Alignment:
Q  304 tgactgttaactttaaccctaaa---tgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    |||||||||| |||||||| |||   ||||||| || |||||| ||||||||||||||||| |||| | |||||| | || ||||| |||||||||||    
T  42870925 tgactgttaagtttaaccccaaaagatgtctattgtggaccaatcttaagagtggtccaccgtagaccttattaaattttgtaatttaaaccgtttga 42871022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 308 - 398
Target Start/End: Original strand, 22551123 - 22551213
Alignment:
Q  308 tgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    |||||| |||||||| |||| |||||||| ||| |||||||| |||| ||||||||| | | |||||| | || ||||| |||||||||||    
T  22551123 tgttaagtttaaccccaaatctctatggtggacaaaccttaaaagtgatccaccataaaccttattaaattttgtaatttaaaccgtttga 22551213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 374
Target Start/End: Original strand, 13116443 - 13116512
Alignment:
Q  305 gactgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctatta 374  Q
    |||||||||||||||| | ||||||||||  |||||||| ||| ||||||||||| | |||| |||||||    
T  13116443 gactgttaactttaactccaaatgtctataatagaccaatcttcagagtggtccatcgtagaccctatta 13116512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 353 - 398
Target Start/End: Original strand, 37400942 - 37400987
Alignment:
Q  353 tggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    ||||||||||||||||||||||||| |||||||  |||||||||||    
T  37400942 tggtccaccatagatcctattaatttttttaatataaaccgtttga 37400987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 386
Target Start/End: Complemental strand, 42100109 - 42100028
Alignment:
Q  305 gactgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaatt 386  Q
    ||||||||||||||||   |||||||| |||| |||||||||||| ||||||||| | |||| | |||||||| | ||||||    
T  42100109 gactgttaactttaacttcaaatgtctttggtggaccaaccttaaaagtggtccatcgtagaccttattaattttgttaatt 42100028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 273
Target Start/End: Original strand, 28291329 - 28291377
Alignment:
Q  225 agttttcattttggtcccataactcttaaaatcatcattttggtccctc 273  Q
    |||||||||||||||||||||| || |||||||| ||||| ||||||||    
T  28291329 agttttcattttggtcccataattcgtaaaatcaacatttcggtccctc 28291377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #44
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 398
Target Start/End: Original strand, 30786789 - 30786884
Alignment:
Q  305 gactgttaacttt--aaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    |||||||||||||  ||| ||||||||||||||| || |||| |||| ||||||||| |||| | | |||||||| | ||||||  ||||||||||    
T  30786789 gactgttaactttttaactctaaatgtctatggtggatcaactttaaaagtggtccatcataaaccttattaattttgttaattttaaccgtttga 30786884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #45
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 287
Target Start/End: Complemental strand, 43203360 - 43203300
Alignment:
Q  227 ttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgt 287  Q
    ||||||||||||||||||||||| |||||||| |||||  |||||||   |||||||||||    
T  43203360 ttttcattttggtcccataactcgtaaaatcaacatttccgtccctcttattttgctccgt 43203300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #46
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 289
Target Start/End: Original strand, 31844403 - 31844466
Alignment:
Q  226 gttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgtta 289  Q
    ||||||||||| ||||| |||||| |||||| | ||||||||||||||   |||||||||||||    
T  31844403 gttttcattttagtcccgtaactcgtaaaattaacattttggtccctcttgttttgctccgtta 31844466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #47
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 289
Target Start/End: Original strand, 38697908 - 38697966
Alignment:
Q  231 cattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgtta 289  Q
    ||||||||| ||||||||  |||||||| ||||||||||||||   |||||||||||||    
T  38697908 cattttggttccataacttgtaaaatcaacattttggtccctcttgttttgctccgtta 38697966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #48
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 309 - 398
Target Start/End: Original strand, 32693947 - 32694036
Alignment:
Q  309 gttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    ||||||||||||  ||||||| |||| | |||||||||||| ||||| | | |||||| | |||||||| | ||||||  ||||||||||    
T  32693947 gttaactttaactttaaatgtatatgatggaccaaccttaaaagtggcctatcatagaccttattaattttattaattttaaccgtttga 32694036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 198; Significance: 1e-107; HSPs: 43)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 857 - 1122
Target Start/End: Original strand, 44375835 - 44376100
Alignment:
Q  857 aaacattcaatacaatagtaactagaaacaacagagtatcaaatccaaattatgaacaaaccaagacaagaacagaggtgcagggtggcgctgaagggat 956  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||| |||||||    
T  44375835 aaacattcaatacaatagtaaccagaaacaacagagtatcaaatccaatttatgaacaaaccaagacaagaacagaggtgcagggccgcgctaaagggat 44375934  T
Q  957 gggcgaagactataggaatggtggtggttgcatgatggcggcgtggcgcaacggagaacgaccctttcgtggaaggaagatcagttttgaagagaaaatt 1056  Q
    |||||||||||||||| |||||||||||||||||| ||||| ||| ||| |||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  44375935 gggcgaagactatagggatggtggtggttgcatgacggcggggtgacgcgacggagaacgaccctttcgtagaagggagatcagttttgaagagaaaatt 44376034  T
Q  1057 gatggacagattcgcacaggtgaccttgcttctccttccggcgttggttttgctctgtgctcctcc 1122  Q
    ||| |||| |||||||||||||||||| ||||||||||||||||||||||||||| || |||||||    
T  44376035 gatcgacatattcgcacaggtgacctttcttctccttccggcgttggttttgctccgttctcctcc 44376100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 857 - 1122
Target Start/End: Original strand, 44384702 - 44384967
Alignment:
Q  857 aaacattcaatacaatagtaactagaaacaacagagtatcaaatccaaattatgaacaaaccaagacaagaacagaggtgcagggtggcgctgaagggat 956  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||| |||||||    
T  44384702 aaacattcaatacaatagtaaccagaaacaacagagtatcaaatccaatttatgaacaaaccaagacaagaacagaggtgcagggccgcgctaaagggat 44384801  T
Q  957 gggcgaagactataggaatggtggtggttgcatgatggcggcgtggcgcaacggagaacgaccctttcgtggaaggaagatcagttttgaagagaaaatt 1056  Q
    |||||||||||||||| |||||||||||||||||| ||||| ||| ||| |||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  44384802 gggcgaagactatagggatggtggtggttgcatgacggcggggtgacgcgacggagaacgaccctttcgtagaagggagatcagttttgaagagaaaatt 44384901  T
Q  1057 gatggacagattcgcacaggtgaccttgcttctccttccggcgttggttttgctctgtgctcctcc 1122  Q
    ||| |||| |||||||||||||||||| ||||||||||||||||||||||||||| || |||||||    
T  44384902 gatcgacatattcgcacaggtgacctttcttctccttccggcgttggttttgctccgttctcctcc 44384967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 168; E-Value: 2e-89
Query Start/End: Original strand, 575 - 762
Target Start/End: Original strand, 44375556 - 44375743
Alignment:
Q  575 cctaagtaaattcatatatgatattcatctcaattttctctttcaacatgattctgatttagaacatgaatgaattttagagatagagaaaataatttag 674  Q
    ||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44375556 cctaattaaattcatatatgatattcatctcaattttctatgtcaacatgattctgatttagaacatgaatgaattttagagatagagaaaataatttag 44375655  T
Q  675 aaaatcataacccattgaattgattttcattctcgtcaatatcgatacccatttaactttcttttcattataccacaaggctaaaaca 762  Q
    || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  44375656 aacatcataacccattgaattgattttcattctcgtcaatgtcgatacccatttaactttcttttcattataccacaaggctaaaaca 44375743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 168; E-Value: 2e-89
Query Start/End: Original strand, 575 - 762
Target Start/End: Original strand, 44384423 - 44384610
Alignment:
Q  575 cctaagtaaattcatatatgatattcatctcaattttctctttcaacatgattctgatttagaacatgaatgaattttagagatagagaaaataatttag 674  Q
    ||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44384423 cctaattaaattcatatatgatattcatctcaattttctatgtcaacatgattctgatttagaacatgaatgaattttagagatagagaaaataatttag 44384522  T
Q  675 aaaatcataacccattgaattgattttcattctcgtcaatatcgatacccatttaactttcttttcattataccacaaggctaaaaca 762  Q
    || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  44384523 aacatcataacccattgaattgattttcattctcgtcaatgtcgatacccatttaactttcttttcattataccacaaggctaaaaca 44384610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 145; E-Value: 1e-75
Query Start/End: Original strand, 224 - 457
Target Start/End: Original strand, 44372762 - 44372995
Alignment:
Q  224 gagttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttattcnnnnnnntccttgactgttaactttaaccct 323  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||       ||| ||||| ||||||||||||||    
T  44372762 gagttttcattttggtctcataactcttaaaattatcattttggtccctcgacttttgctccgttattcaaaaaggtccatgactattaactttaaccct 44372861  T
Q  324 aaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttgannnnnnnncttaaaagaggaccatt 423  Q
    |||||||||| || ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||    
T  44372862 aaatgtctatagtggactaacattaagagtggtccaccatagatcctattaattattttaattaaaaccgtttgatcttttttcttaaaagaggaccatt 44372961  T
Q  424 agattacgcatgtctattttatcttatgatgtat 457  Q
    ||||||| |||||||||||||||||| |||||||    
T  44372962 agattacacatgtctattttatcttaggatgtat 44372995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 145; E-Value: 1e-75
Query Start/End: Original strand, 224 - 457
Target Start/End: Original strand, 44381618 - 44381851
Alignment:
Q  224 gagttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttattcnnnnnnntccttgactgttaactttaaccct 323  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||       ||| ||||| ||||||||||||||    
T  44381618 gagttttcattttggtctcataactcttaaaattatcattttggtccctcgacttttgctccgttattcaaaaaggtccatgactattaactttaaccct 44381717  T
Q  324 aaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttgannnnnnnncttaaaagaggaccatt 423  Q
    |||||||||| || ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||    
T  44381718 aaatgtctatagtggactaacattaagagtggtccaccatagatcctattaattattttaattaaaaccgtttgatcttttttcttaaaagaggaccatt 44381817  T
Q  424 agattacgcatgtctattttatcttatgatgtat 457  Q
    ||||||| |||||||||||||||||| |||||||    
T  44381818 agattacacatgtctattttatcttaggatgtat 44381851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 88; E-Value: 1e-41
Query Start/End: Original strand, 226 - 398
Target Start/End: Original strand, 43441381 - 43441553
Alignment:
Q  226 gttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttattcnnnnnnntccttgactgttaactttaaccctaa 325  Q
    ||||||||||||||| |||||||| |||||| |  |||||||||||||| | |||||||||||| ||       |||||||| |||||||||||||||||    
T  43441381 gttttcattttggtctcataactcataaaattaatattttggtccctcagcgtttgctccgttaatcaaaaagatccttgacggttaactttaaccctaa 43441480  T
Q  326 atgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    |||||||||||  ||||||||||||||||||||||||||  |||||||||||||||||||  |||| ||||||    
T  43441481 atgtctatggtgtaccaaccttaagagtggtccaccataagtcctattaattattttaatgtaaactgtttga 43441553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 220 - 398
Target Start/End: Original strand, 35295728 - 35295906
Alignment:
Q  220 tattgagttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttattcnnnnnnntccttgactgttaactttaa 319  Q
    |||| ||||| ||||||||||||||||||| |||| ||| | |||| |||||||   |||||||| |||| ||       | | |||| |||||||||||    
T  35295728 tattcagtttacattttggtcccataactcgtaaagtcaacgttttagtccctcttgttttgctcagttaatcaaaaaagttcatgaccgttaactttaa 35295827  T
Q  320 ccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    ||| |||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  35295828 ccccaaatatctgtggtggaccaaccttaagagtggtccaccatagatcctattaattattttaatttaaaccgtttga 35295906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 77; E-Value: 4e-35
Query Start/End: Original strand, 233 - 449
Target Start/End: Original strand, 16755913 - 16756127
Alignment:
Q  233 ttttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttattcnnnnnnntccttgactgttaactttaaccctaaatgtcta 332  Q
    |||||||||||||| | | ||||||||||||||| ||||||||| |||||||||||||||       || ||| |||||||||||||||  |||||||||    
T  16755913 ttttggtcccataagtttaaaaatcatcattttgatccctcaacgtttgctccgttattcaaaaaagtctttggctgttaactttaacctcaaatgtcta 16756012  T
Q  333 tggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttgannnnnnnncttaaaa-gaggaccattagattacg 431  Q
    ||||  | ||||||||| ||| ||| ||||||||||||||||||||||||||||  |||| |||||         |||||| ||||||||||||||||||    
T  16756013 tggtgaaacaaccttaaaagttgtctaccatagatcctattaattattttaattttaaccatttgatttttt---ttaaaaggaggaccattagattacg 16756109  T
Q  432 catgtctattttatctta 449  Q
    || || ||||||||||||    
T  16756110 caagtgtattttatctta 16756127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 225 - 384
Target Start/End: Original strand, 15992169 - 15992328
Alignment:
Q  225 agttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttattcnnnnnnntccttgactgttaactttaacccta 324  Q
    |||||||||||||||| |||| |||  ||||||| || |||||||||| ||||||||||| ||| |||       || |||||||||||||||||||  |    
T  15992169 agttttcattttggtctcatagctcgaaaaatcaacactttggtccctgaacttttgctctgttgttcaaaaaggtctttgactgttaactttaacctca 15992268  T
Q  325 aatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaa 384  Q
    |||||||||||| ||||||||||||||||| |  |||| |||||||||||||||||||||    
T  15992269 aatgtctatggtggaccaaccttaagagtgatttaccaaagatcctattaattattttaa 15992328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 225 - 398
Target Start/End: Complemental strand, 669470 - 669298
Alignment:
Q  225 agttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttattcnnnnnnntccttgactgttaactttaacccta 324  Q
    |||||||||||||||||||||| || |||||||| ||||| |||||||    ||||||| ||||  ||       ||| | || |||||||||||||  |    
T  669470 agttttcattttggtcccataattcgtaaaatcaacatttcggtcccttttattttgcttcgtttgtcaaaaaggtccctaaccgttaactttaacctca 669371  T
Q  325 aatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    |||||||||||| ||||| | |||||||||||||||||||||||||||||||| | |||||| |||||||||||    
T  669370 aatgtctatggtggaccatc-ttaagagtggtccaccatagatcctattaattttgttaatttaaaccgtttga 669298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 307 - 398
Target Start/End: Original strand, 46201247 - 46201338
Alignment:
Q  307 ctgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    ||||||| |||||||| |||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||  |||| ||||||    
T  46201247 ctgttaagtttaaccccaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatataaactgtttga 46201338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 300 - 398
Target Start/End: Original strand, 2414854 - 2414952
Alignment:
Q  300 tccttgactgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    ||||| || |||||||||||||| ||||||||||  | |||||||||||| ||||||||||||||||||||||||||| | |||||| |||||||||||    
T  2414854 tccttaaccgttaactttaaccccaaatgtctataatggaccaaccttaaaagtggtccaccatagatcctattaattttcttaatttaaaccgtttga 2414952  T

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Target: chr7; HSP #14
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 304 - 398
Target Start/End: Original strand, 40811432 - 40811528
Alignment:
Q  304 tgactgttaactttaaccctaa--atgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    |||| |||||||||||||| ||  ||||||||||| |||||||||||||||||||||||||||||| ||||||||  |||||||| |||||||||||    
T  40811432 tgacggttaactttaacccaaatgatgtctatggtggaccaaccttaagagtggtccaccatagattctattaatatttttaatttaaaccgtttga 40811528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 326 - 386
Target Start/End: Complemental strand, 11502401 - 11502341
Alignment:
Q  326 atgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaatt 386  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11502401 atgtctatggtagaccaaccttaagagtggtccaccatagatcctagtaattattttaatt 11502341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 326 - 398
Target Start/End: Original strand, 32255126 - 32255198
Alignment:
Q  326 atgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  32255126 atgtttatggtggaccaaccttaagagtggtccaccatagatcctattaattattttaatttcaaccgtttga 32255198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 326 - 398
Target Start/End: Complemental strand, 43460803 - 43460731
Alignment:
Q  326 atgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  43460803 atgtctatggtggaccaactttaagagtggtccaccatagatcctattaattattttaatttaaaccctttga 43460731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 225 - 291
Target Start/End: Complemental strand, 29589352 - 29589286
Alignment:
Q  225 agttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttatt 291  Q
    ||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  29589352 agttttcattttggtccaataagtcttaaaatcatcattttgctccctcaacttttgctccgttatt 29589286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 325 - 470
Target Start/End: Complemental strand, 13564220 - 13564076
Alignment:
Q  325 aatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttgannnnnnnncttaaaagaggaccatta 424  Q
    |||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||  ||||||| ||         | ||||||| ||||||     
T  13564220 aatgtctatggtggatcatccttaagagtggtccaccatagatcctattaattattttaatttgaaccgttagattattttt-taaaaagagaaccattg 13564122  T
Q  425 gattacgcatgtctattttatcttatgatgtatcaccaacgcctaa 470  Q
    |||||  ||||||||||||| |||||||||||  |||||| |||||    
T  13564121 gattagacatgtctattttagcttatgatgtactaccaacacctaa 13564076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 306 - 398
Target Start/End: Original strand, 39981431 - 39981524
Alignment:
Q  306 actgttaactttaaccct-aaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    |||||||||||||||||  ||||||||||||| ||||||| |||| | ||||||||||||||||| |||||||||| ||||| |||||||||||    
T  39981431 actgttaactttaacccccaaatgtctatggtggaccaactttaaaaatggtccaccatagatccaattaattattctaatttaaaccgtttga 39981524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 306 - 398
Target Start/End: Original strand, 41328333 - 41328426
Alignment:
Q  306 actgttaactttaaccct-aaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    |||||||||||||||||  ||||||||||||| || |||| |||| | |||||||||||||||||||||||||||| ||||| |||||||||||    
T  41328333 actgttaactttaacccccaaatgtctatggtggaacaactttaaaaatggtccaccatagatcctattaattattctaatttaaaccgtttga 41328426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 305 - 398
Target Start/End: Original strand, 47454450 - 47454543
Alignment:
Q  305 gactgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||||||| | |||| | |||||||| | ||||||  ||||||||||    
T  47454450 gactattaactttaactctaaatgtctatggtagaccaaccttaagagtggtccatcgtagaccttattaattttattaattttaaccgtttga 47454543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 339 - 470
Target Start/End: Original strand, 22537708 - 22537836
Alignment:
Q  339 accaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttgannnnnnnncttaaaagaggaccattagattacgcatgtct 438  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||         ||||||| | |||||| ||||| ||| ||||    
T  22537708 accaaccttaatagtgatccaccatagatcctattaattattttaatttaaaccgtttgatttttt---ttaaaagggaaccattggattatgcaggtct 22537804  T
Q  439 attttatcttatgatgtatcaccaacgcctaa 470  Q
    ||||||||||| |||| | ||||||| |||||    
T  22537805 attttatcttacgatgaaccaccaacacctaa 22537836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 226 - 292
Target Start/End: Original strand, 9081428 - 9081494
Alignment:
Q  226 gttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttattc 292  Q
    ||||||||||||||||||||| || ||||||||||| |||| |||||||||||||||||| ||||||    
T  9081428 gttttcattttggtcccataagtcataaaatcatcaatttgctccctcaacttttgctcctttattc 9081494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 308 - 395
Target Start/End: Original strand, 22336095 - 22336184
Alignment:
Q  308 tgttaactttaaccctaaatgt--ctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtt 395  Q
    |||||| |||||||| |||||   ||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||  |||||||    
T  22336095 tgttaagtttaaccccaaatgatgctatggtggatcaaccttaaaagtggtccaccatagatcctattaattattttaatttcaaccgtt 22336184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 225 - 289
Target Start/End: Complemental strand, 3332239 - 3332175
Alignment:
Q  225 agttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgtta 289  Q
    |||||||||||||||||||||| |  ||||||||||| |||||||||||||| ||||||||||||    
T  3332239 agttttcattttggtcccataaattctaaaatcatcaatttggtccctcaacgtttgctccgtta 3332175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 233 - 285
Target Start/End: Complemental strand, 44376762 - 44376710
Alignment:
Q  233 ttttggtcccataactcttaaaatcatcattttggtccctcaacttttgctcc 285  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  44376762 ttttggtcccataacttttaaaatcatcattttggtcccttaacttttgctcc 44376710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 233 - 285
Target Start/End: Complemental strand, 44385629 - 44385577
Alignment:
Q  233 ttttggtcccataactcttaaaatcatcattttggtccctcaacttttgctcc 285  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  44385629 ttttggtcccataacttttaaaatcatcattttggtcccttaacttttgctcc 44385577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 308 - 366
Target Start/End: Complemental strand, 22115163 - 22115105
Alignment:
Q  308 tgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccataga 366  Q
    |||||| |||||||| |||||||||| || |||||||||||||||||||||||||||||    
T  22115163 tgttaagtttaaccccaaatgtctatagtggaccaaccttaagagtggtccaccataga 22115105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 308 - 366
Target Start/End: Complemental strand, 40509733 - 40509675
Alignment:
Q  308 tgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccataga 366  Q
    |||||| |||||||| |||||||||| || |||||||||||||||||||||||||||||    
T  40509733 tgttaagtttaaccccaaatgtctatagtggaccaaccttaagagtggtccaccataga 40509675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 225 - 269
Target Start/End: Complemental strand, 48312735 - 48312691
Alignment:
Q  225 agttttcattttggtcccataactcttaaaatcatcattttggtc 269  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  48312735 agttttcattttggtcccataaatcttaaaatcatcattttggtc 48312691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 226 - 289
Target Start/End: Complemental strand, 43442844 - 43442781
Alignment:
Q  226 gttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgtta 289  Q
    |||||||| ||||||||||||||| |||||||| ||||||||||||||   |||||||||||||    
T  43442844 gttttcatattggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgtta 43442781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 317 - 395
Target Start/End: Complemental strand, 30334631 - 30334554
Alignment:
Q  317 taaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtt 395  Q
    |||| ||||||||||||||  ||||||| ||||||   ||||||||||||||||||||||| |||||||| ||||||||    
T  30334631 taactctaaatgtctatggaggaccaactttaagaacagtccaccatagatcctattaatt-ttttaatttaaaccgtt 30334554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 227 - 292
Target Start/End: Original strand, 3330728 - 3330793
Alignment:
Q  227 ttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttattc 292  Q
    |||||||||||||| | ||| ||||||||||| ||||| ||||||||||| ||||||||| |||||    
T  3330728 ttttcattttggtctcttaagtcttaaaatcaccatttcggtccctcaacatttgctccgctattc 3330793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 304 - 449
Target Start/End: Original strand, 47059220 - 47059370
Alignment:
Q  304 tgactgttaactttaaccct--aaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaa--ttattttaattaaaaccgtttgan 399  Q
    |||| ||||| |||||||||  ||| ||||||||| || ||||||||||||| | |||||||||| | ||||||  || |||||||| |||||||||||     
T  47059220 tgaccgttaagtttaaccctccaaaagtctatggtggagcaaccttaagagtagcccaccatagaccttattaatttttttttaatttaaaccgtttgat 47059319  T
Q  400 nnnnnnncttaaaa-gaggaccattagattacgcatgtctattttatctta 449  Q
            |||||| || ||||||| |||||||||||| ||||||||||||    
T  47059320 ctgtttatttaaaaggatgaccattggattacgcatgtgtattttatctta 47059370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 358
Target Start/End: Complemental strand, 33779087 - 33779036
Alignment:
Q  307 ctgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtcc 358  Q
    ||||||| |||||||  ||||||||||||| |||||||||||||||||||||    
T  33779087 ctgttaagtttaaccacaaatgtctatggtggaccaaccttaagagtggtcc 33779036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 308 - 398
Target Start/End: Original strand, 40508495 - 40508585
Alignment:
Q  308 tgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    |||||| ||||| || ||||||||||||| || ||| ||||||||| |||||||||||||   ||||||| ||| ||||  ||||||||||    
T  40508495 tgttaagtttaatcccaaatgtctatggtggatcaatcttaagagttgtccaccatagatttcattaattttttaaattttaaccgtttga 40508585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 305 - 375
Target Start/End: Complemental strand, 47060478 - 47060408
Alignment:
Q  305 gactgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaa 375  Q
    ||||||||| |||||| | |||||| |||||| |||||||||||||| | |||||||||||| | ||||||    
T  47060478 gactgttaagtttaacaccaaatgtatatggtggaccaaccttaagaatagtccaccatagaccttattaa 47060408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 356
Target Start/End: Original strand, 11501293 - 11501344
Alignment:
Q  305 gactgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggt 356  Q
    ||||||||||||||||   ||||||||||||| |||||||||||| ||||||    
T  11501293 gactgttaactttaacttcaaatgtctatggtggaccaaccttaaaagtggt 11501344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 272
Target Start/End: Original strand, 48312058 - 48312105
Alignment:
Q  225 agttttcattttggtcccataactcttaaaatcatcattttggtccct 272  Q
    |||| |||||||| |||||||| ||||||||||||||||||| |||||    
T  48312058 agttctcattttgatcccataaatcttaaaatcatcattttgatccct 48312105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 366
Target Start/End: Complemental strand, 4300047 - 4299989
Alignment:
Q  308 tgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccataga 366  Q
    |||||| |||||||| ||| |||||| || || ||||||||||||||| ||||||||||    
T  4300047 tgttaagtttaaccccaaacgtctatagtggatcaaccttaagagtggcccaccataga 4299989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 272
Target Start/End: Complemental strand, 10957235 - 10957189
Alignment:
Q  226 gttttcattttggtcccataactcttaaaatcatcattttggtccct 272  Q
    |||||||||||||||||||||||| |||||| | | |||||||||||    
T  10957235 gttttcattttggtcccataactcgtaaaattaacgttttggtccct 10957189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 272
Target Start/End: Original strand, 26135676 - 26135722
Alignment:
Q  226 gttttcattttggtcccataactcttaaaatcatcattttggtccct 272  Q
    |||||||||||||||||||||||  |||||||| | |||||||||||    
T  26135676 gttttcattttggtcccataacttctaaaatcaacgttttggtccct 26135722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 7e-49; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 7e-49
Query Start/End: Original strand, 226 - 398
Target Start/End: Original strand, 1102653 - 1102825
Alignment:
Q  226 gttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttattcnnnnnnntccttgactgttaactttaaccctaa 325  Q
    |||| ||| ||||||||||||||| |||||||| ||||| ||||||||||| ||| |||||||  ||       ||| ||||||||||||||||||| ||    
T  1102653 gtttacatattggtcccataactcgtaaaatcaacatttaggtccctcaacgttttctccgttcatcaaaaaggtccctgactgttaactttaaccccaa 1102752  T
Q  326 atgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  1102753 atgtctatggtagaccaaccttaagagtggtccaccatagatcttattaattattttaatttaaaccgtttga 1102825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 4e-35
Query Start/End: Original strand, 225 - 470
Target Start/End: Complemental strand, 9220542 - 9220296
Alignment:
Q  225 agttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttattcnnnnnnntccttgactgttaactttaacccta 324  Q
    ||||||||||||| |||||||| |||| ||||||  |||||||||||||||||||||||| |||||||       ||| |   ||||||||||||||  |    
T  9220542 agttttcattttgttcccataagtcttgaaatcagaattttggtccctcaacttttgctctgttattcaaaaaagtccctcgttgttaactttaacctca 9220443  T
Q  325 aatgtctatggtagaccaaccttaaga---gtggtccaccatagatcctattaattattttaattaaaaccgtttgannnnnnnncttaaaagaggacca 421  Q
    |||||||||||| ||||||| ||||||   ||||||| ||||| ||| ||||||||||||||||| |||||||||||        ||||||||| ||||     
T  9220442 aatgtctatggtggaccaacattaagaagagtggtcccccataaatcttattaattattttaatttaaaccgtttga--tttttccttaaaagacgaccg 9220345  T
Q  422 ttagattacgcatgtctattttatcttatgatgtatcaccaacgcctaa 470  Q
    || |||||| ||||||||||||| | || ||||||| |||||| |||||    
T  9220344 ttggattacacatgtctattttaccatacgatgtattaccaacacctaa 9220296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 226 - 464
Target Start/End: Complemental strand, 4127334 - 4127091
Alignment:
Q  226 gttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttattcnnnnnnntc-cttgactgttaactttaacccta 324  Q
    |||||||||||||||||||||||| |||||| | | ||||||||| ||||| |||||||||||| ||       || |||| | |||||||||||||| |    
T  4127334 gttttcattttggtcccataactcgtaaaattaacgttttggtccttcaacgtttgctccgttagtctaaaaagtctcttgcc-gttaactttaacccca 4127236  T
Q  325 aatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttgannnnnnnnct-----taaaagaggac 419  Q
    |||||||||| |||| ||| ||||| |||||||||||||||||||| ||||||| ||||||| ||||| |||||         |     |||||||| ||    
T  4127235 aatgtctatgatagatcaatcttaaaagtggtccaccatagatcctgttaattaatttaatttaaaccatttgatttttattttttttgtaaaagagaac 4127136  T
Q  420 cattagattacgcatgtctattttatcttatgatgtatcaccaac 464  Q
    ||||||||| | || |||||||||||||||||||||| |||||||    
T  4127135 cattagattgcacaggtctattttatcttatgatgtaccaccaac 4127091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 226 - 447
Target Start/End: Original strand, 10735798 - 10736018
Alignment:
Q  226 gttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttattcnnnnnnntccttgactgttaactttaaccctaa 325  Q
    |||||||||||||||||||||||| |||||||| | ||||||||||||   ||||||||||||| ||       ||| | || |||||||||||| | ||    
T  10735798 gttttcattttggtcccataactcgtaaaatcaacgttttggtccctcttgttttgctccgttagtcaaaaaggtccctaaccgttaactttaactccaa 10735897  T
Q  326 atgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttgannnnnnnncttaaaagaggaccattag 425  Q
    || |||||||| ||||||| |||| ||  |||||||||||||| ||||||||||||||||| ||||||| |||         |||||| ||||||||| |    
T  10735898 atatctatggtggaccaacgttaacagcagtccaccatagatcatattaattattttaatttaaaccgtctgattaatttt-ttaaaaaaggaccatttg 10735996  T
Q  426 attacgcatgtctattttatct 447  Q
    |||||||| || ||||||||||    
T  10735997 attacgcaggtgtattttatct 10736018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 305 - 464
Target Start/End: Original strand, 30910854 - 30911015
Alignment:
Q  305 gactgttaactttaaccctaaatg---tctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttgannn 401  Q
    |||||||||||||||| | |||||   ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||       
T  30910854 gactgttaactttaacaccaaatgatgtctttggtggaccaaccttaagagtggtccaccatagatcctattaattattttaatttcaaccgtttgagtt 30910953  T
Q  402 nnnnncttaaaagaggaccattagattacgcatgtctattttatcttatgatgtatcaccaac 464  Q
          ||||||||| ||||||  |||| ||||||||||||||||||| |||||| |||||||    
T  30910954 tttct-ttaaaagagaaccattgaattaggcatgtctattttatcttacgatgtaccaccaac 30911015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 302 - 398
Target Start/End: Complemental strand, 30859178 - 30859079
Alignment:
Q  302 cttgactgttaactttaaccctaaatg---tctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    |||||| ||||| |||||||| |||||   |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  30859178 cttgaccgttaagtttaaccccaaatgatgtctatggtggaccaatcttaagagtggtccaccatagatcctattaattattttaatttaaaccgtttga 30859079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 304 - 398
Target Start/End: Original strand, 39603965 - 39604062
Alignment:
Q  304 tgactgttaactttaaccctaaatg---tctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    |||||||||| |||||||| |||||   ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||| ||||||    
T  39603965 tgactgttaagtttaaccccaaatgatgtctatggtagaccaaccttaaaagtgatccaccatagatcctattaattattttaatttaaactgtttga 39604062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 309 - 381
Target Start/End: Complemental strand, 1010363 - 1010291
Alignment:
Q  309 gttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattt 381  Q
    |||||||||||||| |||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  1010363 gttaactttaaccccaaatgtgtatggtggaccaaccttaagagtggtccgccatagatcctattaattattt 1010291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 309 - 381
Target Start/End: Original strand, 8521372 - 8521444
Alignment:
Q  309 gttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattt 381  Q
    |||||||||||||| |||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  8521372 gttaactttaaccccaaatgtgtatggtggaccaaccttaagaatggtccaccatagatcctattaattattt 8521444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 330 - 398
Target Start/End: Original strand, 11262532 - 11262600
Alignment:
Q  330 ctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||    
T  11262532 ctatggtggaccaaccttaagagtggtccaccatagatcctattaattattataatttaaaccatttga 11262600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 326 - 398
Target Start/End: Original strand, 22047869 - 22047941
Alignment:
Q  326 atgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    ||||||||||| || |||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||    
T  22047869 atgtctatggtggatcaaccttaagagtggtccaccataaatcctatgaattattttaatttaaaccgtttga 22047941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 326 - 398
Target Start/End: Complemental strand, 27705296 - 27705224
Alignment:
Q  326 atgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||  |||||||| |||||||||||    
T  27705296 atgtctatggtggaccaaccttaaaagtggtccaccatagatcctattaatatttttaatttaaaccgtttga 27705224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 308 - 470
Target Start/End: Complemental strand, 36898980 - 36898815
Alignment:
Q  308 tgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttgannnnnnnn- 406  Q
    ||||||||||||||  |||| | |||||| | |||||||||| ||| ||||||||||||| || |||||||||||| || ||||| |||||             
T  36898980 tgttaactttaacctcaaatatttatggtggcccaaccttaaaagtagtccaccatagattctgttaattattttagtttaaaccctttgattttttttt 36898881  T
Q  407 ctt--aaaagaggaccattagattacgcatgtctattttatcttatgatgtatcaccaacgcctaa 470  Q
    |||  |||||| ||||||| ||||||||||||||||||||||||| |||||| ||||||| |||||    
T  36898880 cttctaaaagatgaccattggattacgcatgtctattttatcttacgatgtaccaccaacacctaa 36898815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 305 - 398
Target Start/End: Complemental strand, 325188 - 325095
Alignment:
Q  305 gactgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    |||||||||||||||| ||||||||||||||| |||||||||||| ||||||||| | |||| | |||||||| | ||||||  ||||||||||    
T  325188 gactgttaactttaactctaaatgtctatggtggaccaaccttaatagtggtccatcgtagaccttattaattttgttaattttaaccgtttga 325095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 331 - 381
Target Start/End: Original strand, 1009325 - 1009375
Alignment:
Q  331 tatggtagaccaaccttaagagtggtccaccatagatcctattaattattt 381  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1009325 tatggtggaccaaccttaagagtggtccaccatagatcctattaattattt 1009375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 300 - 366
Target Start/End: Complemental strand, 33173967 - 33173901
Alignment:
Q  300 tccttgactgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccataga 366  Q
    |||||| ||||||| |||||||| ||||||||||||| |||||||||||||||||||| ||||||||    
T  33173967 tccttggctgttaagtttaaccccaaatgtctatggtggaccaaccttaagagtggtctaccataga 33173901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 289
Target Start/End: Complemental strand, 10737019 - 10736956
Alignment:
Q  226 gttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgtta 289  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||   |||||||||||||    
T  10737019 gttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgtta 10736956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 346 - 464
Target Start/End: Complemental strand, 13520760 - 13520642
Alignment:
Q  346 ttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttgannnnnnnncttaaaagaggaccattagattacgcatgtctattttat 445  Q
    ||||||||||| ||||||||||||||||||||| ||| ||| |||| ||| ||         | ||||||| ||| || ||||||| | |||||||||||    
T  13520760 ttaagagtggttcaccatagatcctattaattaatttgatttaaactgttggattttttttataaaaagagaaccgttggattacgaaggtctattttat 13520661  T
Q  446 cttatgatgtatcaccaac 464  Q
    |||||||||||||||||||    
T  13520660 cttatgatgtatcaccaac 13520642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 308 - 366
Target Start/End: Complemental strand, 22308798 - 22308740
Alignment:
Q  308 tgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccataga 366  Q
    |||||| |||||||| ||||||||||||| |||| ||||||||||||||||||||||||    
T  22308798 tgttaagtttaaccccaaatgtctatggtggacctaccttaagagtggtccaccataga 22308740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 226 - 386
Target Start/End: Complemental strand, 35081518 - 35081358
Alignment:
Q  226 gttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttattcnnnnnnntccttgactgttaactttaaccctaa 325  Q
    |||||||||||||||||||||||| |||||||| | ||||||||| |||| ||   |||| ||| ||       ||  | || |||||||||||||  ||    
T  35081518 gttttcattttggtcccataactcgtaaaatcaacgttttggtccttcaagttaacctccattagtcaaattgatcactaaccgttaactttaacctcaa 35081419  T
Q  326 atgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaatt 386  Q
    |||||||| || || ||||||||||||| |||||||||| | | || ||||| ||||||||    
T  35081418 atgtctatagtggatcaaccttaagagttgtccaccataaaccttaataatttttttaatt 35081358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 306 - 377
Target Start/End: Original strand, 324153 - 324225
Alignment:
Q  306 actgttaacttt-aaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaatt 377  Q
    |||||||||||| ||| ||||||||||||||| ||||||| |||| ||||||||| |||||| | ||||||||    
T  324153 actgttaacttttaactctaaatgtctatggtggaccaactttaatagtggtccatcatagaccttattaatt 324225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 332
Target Start/End: Complemental strand, 11797617 - 11797508
Alignment:
Q  223 tgagttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttattcnnnnnnntccttgactgttaactttaaccc 322  Q
    ||||||| |||||||||| |||||||| |||||||| ||||||||||||||   |||| |||||||| ||       |||||  ||||||||||||||      
T  11797617 tgagtttacattttggtctcataactcgtaaaatcaacattttggtccctcttgtttttctccgttagtcaaaaaggtccttagctgttaactttaactt 11797518  T
Q  323 taaatgtcta 332  Q
    ||||||||||    
T  11797517 taaatgtcta 11797508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 307 - 378
Target Start/End: Original strand, 15548352 - 15548426
Alignment:
Q  307 ctgttaactttaaccctaaatg---tctatggtagaccaaccttaagagtggtccaccatagatcctattaatta 378  Q
    ||||||| ||||||||||||||   ||| |||| |||||||||||||| || ||||||||| |||||||||||||    
T  15548352 ctgttaagtttaaccctaaatgatgtctctggtggaccaaccttaagaatgatccaccataaatcctattaatta 15548426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 308 - 386
Target Start/End: Complemental strand, 30912162 - 30912084
Alignment:
Q  308 tgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaatt 386  Q
    ||||||||||||| | |||| |||||||| |||||||||||| |||||| || |||||| | |||||||| | ||||||    
T  30912162 tgttaactttaactccaaatatctatggtggaccaaccttaaaagtggtacatcatagaccttattaattttgttaatt 30912084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 272
Target Start/End: Original strand, 28702604 - 28702650
Alignment:
Q  226 gttttcattttggtcccataactcttaaaatcatcattttggtccct 272  Q
    |||||||||||||||||||||||| |||||| | | |||||||||||    
T  28702604 gttttcattttggtcccataactcgtaaaattaacgttttggtccct 28702650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 4e-47; HSPs: 50)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 225 - 386
Target Start/End: Complemental strand, 3617579 - 3617418
Alignment:
Q  225 agttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttattcnnnnnnntccttgactgttaactttaacccta 324  Q
    ||||||| |||||||||||||| | | ||||||||||||||||||||||||| |||||||||||||||       |||||| |||||||||||||||  |    
T  3617579 agttttcgttttggtcccataagtttaaaaatcatcattttggtccctcaacgtttgctccgttattcaaaaaagtccttggctgttaactttaacctca 3617480  T
Q  325 aatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaatt 386  Q
    ||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||||||    
T  3617479 aatgtctatggtgaaccaaccttaagagtggtccactatagatcctattaattattttaatt 3617418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 1e-41
Query Start/End: Original strand, 225 - 449
Target Start/End: Complemental strand, 9226297 - 9226073
Alignment:
Q  225 agttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttattcnnnnnnntccttgactgttaactttaacccta 324  Q
    |||||||||||||||||||||| | |||||||||||| ||||| |||| ||||||| |||||||||||       || |||   ||||| |||||||  |    
T  9226297 agttttcattttggtcccataaattttaaaatcatcaatttggccccttaacttttactccgttattcaatttggtcattggacgttaaatttaacctca 9226198  T
Q  325 aatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttgannnnnnnncttaaaagaggaccatta 424  Q
    |||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||| |||  ||||||         ||||||||| |||||||    
T  9226197 aatgtctatggtggatcaaccttaaaagtggtccaccatagatcctattaattattttaatttaaattgtttgatcttttttattaaaagagaaccatta 9226098  T
Q  425 gattacgcatgtctattttatctta 449  Q
     || |||||||||||||||||||||    
T  9226097 aatcacgcatgtctattttatctta 9226073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 226 - 464
Target Start/End: Complemental strand, 5613166 - 5612928
Alignment:
Q  226 gttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttattcnnnnnnntccttga-ctgttaactttaacccta 324  Q
    ||||||||||||||||||||| || |||||||| ||| ||||||||||||| |||||||||||| ||       ||| ||  |||||||||||||||| |    
T  5613166 gttttcattttggtcccataattcgtaaaatcaacatattggtccctcaacgtttgctccgttagtcaaaaaggtccctgcgctgttaactttaacccca 5613067  T
Q  325 aatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttgannnnnnnncttaaaagaggaccatta 424  Q
    ||||| |||||| || || | |||| |||| ||||||||||||||||||||||||||||||| |||||||||||         | ||| || ||||||||    
T  5613066 aatgtttatggtggatcacctttaa-agtgatccaccatagatcctattaattattttaatttaaaccgtttgattatatttttaaaaggatgaccatta 5612968  T
Q  425 gattacgcatgtctattttatcttatgatgtatcaccaac 464  Q
    ||||||| | || |||||||||||||| || |||| ||||    
T  5612967 gattacgtaagtgtattttatcttatggtgaatcaacaac 5612928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 225 - 449
Target Start/End: Complemental strand, 6049506 - 6049283
Alignment:
Q  225 agttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttattcnnnnnnntccttgactgttaactttaacccta 324  Q
    |||||| ||||||||| ||||| || |||||||||||||||||||||||||| |||||| ||||||||       ||||  ||  ||||||| ||| | |    
T  6049506 agtttttattttggtctcataagtcctaaaatcatcattttggtccctcaacgtttgctacgttattcaatttggtccta-acaattaacttcaactcca 6049408  T
Q  325 aatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttgannnnnnnncttaaaagaggaccatta 424  Q
    |||||||||||| |||||| || || ||||||||||| |||||||| ||||||||||||||| |||||| ||||         |||||||||||||||||    
T  6049407 aatgtctatggtggaccaatctaaatagtggtccaccgtagatcctgttaattattttaatttaaaccgattgatattttttattaaaagaggaccatta 6049308  T
Q  425 gattacgcatgtctattttatctta 449  Q
    ||| | ||||||||| | |||||||    
T  6049307 gatcatgcatgtctactgtatctta 6049283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 226 - 398
Target Start/End: Original strand, 26286447 - 26286618
Alignment:
Q  226 gttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttattcnnnnnnntccttgactgttaactttaaccctaa 325  Q
    ||||||||||||||||||||| || |||||||| ||| ||||||||||||| |||||||||||| ||       ||| || |||||||||||||||| ||    
T  26286447 gttttcattttggtcccataattcgtaaaatcaacatattggtccctcaacgtttgctccgttagtcaaaaaggtccctggctgttaactttaaccccaa 26286546  T
Q  326 atgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    |||| |||||| || | ||||| | |||| |||||||||||  |||||||||||||||||| |||||||||||    
T  26286547 atgtttatggtggatc-acctttaaagtgatccaccatagactctattaattattttaatttaaaccgtttga 26286618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 226 - 398
Target Start/End: Original strand, 48527569 - 48527741
Alignment:
Q  226 gttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttattcnnnnnnntccttgactgttaactttaaccctaa 325  Q
    |||| ||||||||||||||||||| |||||| | ||||||||||||| ||| ||||||  |||| ||       ||| | | ||||||||||||| | ||    
T  48527569 gtttacattttggtcccataactcgtaaaattaacattttggtcccttaacgtttgctgtgttaatcaaaaaggtccctaattgttaactttaactccaa 48527668  T
Q  326 atgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    ||||||||||| ||||||| ||||||||||||||||||||||| ||| ||||||||||||| |||| ||||||    
T  48527669 atgtctatggtcgaccaactttaagagtggtccaccatagatcttatcaattattttaatttaaactgtttga 48527741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 311 - 386
Target Start/End: Complemental strand, 13147412 - 13147337
Alignment:
Q  311 taactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaatt 386  Q
    ||||||||| || ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  13147412 taactttaatcccaaatgtctatggtggaccaaccttaatagtggtccaccatagatcctattaattattttaatt 13147337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 326 - 470
Target Start/End: Complemental strand, 16965106 - 16964963
Alignment:
Q  326 atgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttgannnnnnnncttaaaagaggaccattag 425  Q
    |||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||  |||||||||          ||||||||| ||||||      
T  16965106 atgtatatggtggaccaactttaagagtggtccaccatagatcctattaattattttaatttcaaccgtttg-ttttttcttttaaaagagaaccattgt 16965008  T
Q  426 attacgcatgtctattttatcttatgatgtatcaccaacgcctaa 470  Q
    |||||||| ||||||||||| ||| |||||| ||||||| |||||    
T  16965007 attacgcaggtctattttatattacgatgtaccaccaacacctaa 16964963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 307 - 398
Target Start/End: Complemental strand, 44999462 - 44999371
Alignment:
Q  307 ctgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    ||||||||||||||| |||||||||||||| |||||| | |||||||||| ||||||||||| ||||||||||||||| | ||||| |||||    
T  44999462 ctgttaactttaaccttaaatgtctatggtggaccaatcgtaagagtggttcaccatagatcttattaattattttaacttaaaccatttga 44999371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 306 - 398
Target Start/End: Original strand, 51445704 - 51445797
Alignment:
Q  306 actgttaactttaaccct-aaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    |||||||||||||||||  ||||||||||||| || |||| |||| | |||||||||||||||||||||||||||| ||||| |||||||||||    
T  51445704 actgttaactttaacccccaaatgtctatggtggatcaactttaaaaatggtccaccatagatcctattaattattctaatttaaaccgtttga 51445797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 225 - 398
Target Start/End: Original strand, 12665825 - 12665997
Alignment:
Q  225 agttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttattcnnnnnnntccttgactgttaactttaacccta 324  Q
    |||||| ||||||||||||||| || |||||||| ||||| ||||||||   ||||||| ||||| ||       ||| | || |||||||||||||  |    
T  12665825 agtttttattttggtcccataattcgtaaaatcaacatttcggtccctcttattttgcttcgttagtcaaaaaggtccctaaccgttaactttaacctca 12665924  T
Q  325 aatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    ||||| ||||||  |||| | ||||||||||||||||||||||| |||||||| | |||||| |||||||||||    
T  12665925 aatgtttatggtgaaccatc-ttaagagtggtccaccatagatcttattaattttgttaatttaaaccgtttga 12665997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 307 - 398
Target Start/End: Complemental strand, 35943447 - 35943355
Alignment:
Q  307 ctgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattatttta-attaaaaccgtttga 398  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||| | |||||| | |||||  ||||||||||||||    
T  35943447 ctgttaagtttaaccctaaatgtctatggtggaccaaccttaagagtgatccaccatagaccttattaaattttttattttaaaaccgtttga 35943355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 306 - 381
Target Start/End: Complemental strand, 48097033 - 48096958
Alignment:
Q  306 actgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattt 381  Q
    |||||||| |||||||  |||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  48097033 actgttaagtttaacctcaaatgtatatggtggaccaaccttaagagtggtctaccatagatcctattaattattt 48096958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 300 - 470
Target Start/End: Complemental strand, 46318624 - 46318456
Alignment:
Q  300 tccttgactgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttgan 399  Q
    |||||| ||||||| |||||||| ||||||||||| | ||  | | || ||||||||||||||||||||||||||| |||||||||| ||| |||||||     
T  46318624 tccttggctgttaagtttaaccccaaatgtctatgatggatta-cttttagagtggtccaccatagatcctattaaatattttaatttaaatcgtttgat 46318526  T
Q  400 nnnnnnncttaaaagaggaccattagattacgcatgtctattttatcttatgatgtatcaccaacgcctaa 470  Q
            || ||| || ||||||||||||  ||||||||||||||||||||||||| || |||| |||||    
T  46318525 cttttttttttaaa-agaaccattagattatacatgtctattttatcttatgatgtaccagcaacacctaa 46318456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 324 - 398
Target Start/End: Complemental strand, 52078127 - 52078053
Alignment:
Q  324 aaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    |||||||||||||  |||||||||||||||| | |||||||||||||||||||||||||||||  ||||||||||    
T  52078127 aaatgtctatggtgaaccaaccttaagagtgatacaccatagatcctattaattattttaattttaaccgtttga 52078053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 310 - 398
Target Start/End: Original strand, 14478384 - 14478473
Alignment:
Q  310 ttaactttaaccct-aaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    |||||||||||||  ||||||||||||| |||| || |||| | |||||||||||||||||||||||||||| ||||| |||||||||||    
T  14478384 ttaactttaacccccaaatgtctatggtggaccgactttaaaaatggtccaccatagatcctattaattattctaatttaaaccgtttga 14478473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 305 - 398
Target Start/End: Original strand, 46110395 - 46110488
Alignment:
Q  305 gactgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    |||||||||||||||| |||||| |||||||| |||||||||||||||||||||| | |||| | |||||||| | ||||||  ||||||||||    
T  46110395 gactgttaactttaactctaaatatctatggtggaccaaccttaagagtggtccatcgtagaccttattaattttgttaattttaaccgtttga 46110488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 226 - 289
Target Start/End: Complemental strand, 26287865 - 26287802
Alignment:
Q  226 gttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgtta 289  Q
    ||||||||||||||||||||| || |||||||| ||||||||||||||||||||| ||||||||    
T  26287865 gttttcattttggtcccataattcgtaaaatcaacattttggtccctcaacttttactccgtta 26287802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 306 - 376
Target Start/End: Complemental strand, 15746767 - 15746697
Alignment:
Q  306 actgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaat 376  Q
    |||||||| ||||||   ||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  15746767 actgttaagtttaacttcaaatgtctatggtggaccaatcttaagagtggtccaccatagatcctattaat 15746697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 225 - 398
Target Start/End: Complemental strand, 18821821 - 18821648
Alignment:
Q  225 agttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttattcnnnnnnntccttgactgttaactttaacccta 324  Q
    ||||||||||||| || || ||||| |||||||| | ||| ||||||||||| ||||| ||||||  |       ||| | || |||| |||||||   |    
T  18821821 agttttcattttgatctcacaactcgtaaaatcaacgtttcggtccctcaacgtttgcaccgttagccaaattgatccataaccgttatctttaacttca 18821722  T
Q  325 aatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    |||||||||||| ||| |||||||||||||||| |||| |||||||||||||| ||| || |  ||||||||||    
T  18821721 aatgtctatggtggactaaccttaagagtggtctaccaaagatcctattaattttttaaaatttaaccgtttga 18821648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 326 - 398
Target Start/End: Complemental strand, 45584988 - 45584916
Alignment:
Q  326 atgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    ||||||||||| | ||||| ||||||||| ||||||||||||||||||||||||||||||  ||| |||||||    
T  45584988 atgtctatggtggcccaactttaagagtgctccaccatagatcctattaattattttaatataaatcgtttga 45584916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 334 - 398
Target Start/End: Original strand, 49801761 - 49801825
Alignment:
Q  334 ggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    |||| ||||||||||| |||||||||||||| || |||||||||||||||||| |||||||||||    
T  49801761 ggtaaaccaaccttaaaagtggtccaccataaattctattaattattttaatttaaaccgtttga 49801825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 307 - 386
Target Start/End: Complemental strand, 15072790 - 15072711
Alignment:
Q  307 ctgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaatt 386  Q
    |||||||||||||||  ||||||||||||| ||||||||| |||||||||||||| ||||  ||||||||| | ||||||    
T  15072790 ctgttaactttaacctcaaatgtctatggtggaccaacctaaagagtggtccaccgtagactctattaattttcttaatt 15072711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 323 - 398
Target Start/End: Original strand, 26802072 - 26802147
Alignment:
Q  323 taaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    |||||||||| |||  ||||||||||||||| |||||| ||||||| ||||||| ||||||||| |||||||||||    
T  26802072 taaatgtctaaggtgaaccaaccttaagagttgtccactatagatcatattaatcattttaatttaaaccgtttga 26802147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 225 - 292
Target Start/End: Original strand, 27556304 - 27556371
Alignment:
Q  225 agttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttattc 292  Q
    |||||| ||||||||||||||| |||||||||||||| |   ||||||||||||||||||||||||||    
T  27556304 agtttttattttggtcccataagtcttaaaatcatcaatcgagtccctcaacttttgctccgttattc 27556371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 225 - 292
Target Start/End: Original strand, 52076565 - 52076632
Alignment:
Q  225 agttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttattc 292  Q
    ||||||| |||||||||||| | ||  ||||||||||||||||||||||||| |||||||||||||||    
T  52076565 agttttcgttttggtcccattagtccaaaaatcatcattttggtccctcaacgtttgctccgttattc 52076632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 308 - 382
Target Start/End: Original strand, 9482573 - 9482646
Alignment:
Q  308 tgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattatttt 382  Q
    ||||||||||||||| |||||||||  || ||||||| ||||||||||| ||||||||||| |||||||||||||    
T  9482573 tgttaactttaaccc-aaatgtctacagtggaccaactttaagagtggttcaccatagatcttattaattatttt 9482646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 316 - 386
Target Start/End: Complemental strand, 9485295 - 9485225
Alignment:
Q  316 ttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaatt 386  Q
    ||||||||| ||||||||||| || |||| |||||||||||  |||||| |||||||||||||||||||||    
T  9485295 ttaaccctagatgtctatggtggatcaactttaagagtggttaaccataaatcctattaattattttaatt 9485225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 308 - 398
Target Start/End: Original strand, 13894731 - 13894820
Alignment:
Q  308 tgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    ||||||||||||||    || |||||||| ||||||||| |||||| ||| |||||||||||| ||||||||||||||| |||||||||||    
T  13894731 tgttaactttaacctcgcatatctatggt-gaccaacctaaagagttgtctaccatagatcctgttaattattttaatttaaaccgtttga 13894820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 304 - 386
Target Start/End: Original strand, 16963946 - 16964028
Alignment:
Q  304 tgactgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaatt 386  Q
    ||||||||||||||||| |||||||| |||| | |||||||||||| ||||||||| |||||| | |||||||| | ||||||    
T  16963946 tgactgttaactttaactctaaatgtttatgatggaccaaccttaaaagtggtccatcatagaccttattaattttgttaatt 16964028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 308 - 366
Target Start/End: Complemental strand, 41873970 - 41873912
Alignment:
Q  308 tgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccataga 366  Q
    |||||| |||||||  ||||||||||||| |||||||||||||||||||||||||||||    
T  41873970 tgttaagtttaaccacaaatgtctatggtggaccaaccttaagagtggtccaccataga 41873912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 292
Target Start/End: Original strand, 3615284 - 3615348
Alignment:
Q  228 tttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttattc 292  Q
    |||| |||||||||||||| | | ||||||||||||||||||||||||| |||||||| ||||||    
T  3615284 tttcgttttggtcccataagtataaaaatcatcattttggtccctcaacgtttgctccattattc 3615348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 304 - 392
Target Start/End: Original strand, 10711901 - 10711989
Alignment:
Q  304 tgactgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaacc 392  Q
    |||| |||||||||||||  |||| |||||| ||||||||||| |||||||||||| |||| || ||| ||||| |||||||| |||||    
T  10711901 tgaccgttaactttaacctcaaatatctatgatagaccaacctaaagagtggtccatcataaattctactaatttttttaatttaaacc 10711989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 309 - 392
Target Start/End: Complemental strand, 10722374 - 10722291
Alignment:
Q  309 gttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaacc 392  Q
    |||||||||||||  |||| |||||| | ||||||||| |||||||||||| ||||||| ||| ||||| |||||||| |||||    
T  10722374 gttaactttaacctcaaatatctatgatggaccaacctaaagagtggtccatcatagattctactaatttttttaatttaaacc 10722291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 226 - 398
Target Start/End: Original strand, 28050356 - 28050528
Alignment:
Q  226 gttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttattcnnnnnnntccttgactgttaactttaaccctaa 325  Q
    |||| |||||||||||||||| |  |||||||  ||||||||||||     ||||||||||||| ||       ||||||  ||||||||||||||  ||    
T  28050356 gtttacattttggtcccataaattgtaaaatccacattttggtccccttgattttgctccgttagtcaaaaaggtccttggatgttaactttaacctcaa 28050455  T
Q  326 atgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    ||||||   || |||||| |||||||||| |||||||||||||||||| ||| | |||| |  ||||||||||    
T  28050456 atgtcttaagtggaccaatcttaagagtgttccaccatagatcctattgattttcttaactttaaccgtttga 28050528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 307 - 398
Target Start/End: Original strand, 46467262 - 46467352
Alignment:
Q  307 ctgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    ||||||| ||||||| |||||||||||||| ||||||| |||| |||| |||||| |||||  |||||| | |||||||| |||||||||||    
T  46467262 ctgttaagtttaaccataaatgtctatggtggaccaacattaaaagtgatccaccgtagatgttattaaat-ttttaatttaaaccgtttga 46467352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 308 - 366
Target Start/End: Complemental strand, 14477790 - 14477732
Alignment:
Q  308 tgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccataga 366  Q
    |||||| |||||| |||||||||||||||||| ||| ||||||||| ||||||||||||    
T  14477790 tgttaagtttaactctaaatgtctatggtagatcaatcttaagagttgtccaccataga 14477732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 304 - 398
Target Start/End: Original strand, 15232864 - 15232960
Alignment:
Q  304 tgactgttaactttaaccctaa--atgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    |||| ||||| |||||||| ||  |||| ||| || ||||||| |||| ||||||||| |||||||||||||||||||||||||   ||||||||||    
T  15232864 tgaccgttaagtttaacccaaatgatgtatatagtggaccaactttaaaagtggtccatcatagatcctattaattattttaatatcaaccgtttga 15232960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 308 - 364
Target Start/End: Original strand, 14470973 - 14471029
Alignment:
Q  308 tgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccata 364  Q
    |||||| |||||||| ||| |||||| || |||||||||||||||||||||||||||    
T  14470973 tgttaagtttaaccccaaacgtctatagtggaccaaccttaagagtggtccaccata 14471029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 289
Target Start/End: Original strand, 5611761 - 5611824
Alignment:
Q  226 gttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgtta 289  Q
    ||||||||||||||||||||| |  |||||||| ||||||||| ||||||||||| ||| ||||    
T  5611761 gttttcattttggtcccataatttgtaaaatcaacattttggtgcctcaacttttactctgtta 5611824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 292
Target Start/End: Original strand, 6047953 - 6048019
Alignment:
Q  225 agttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttattc 292  Q
    |||||| ||||||||||||||| || || ||| ||||||||||| |||||||||||||||||| ||||    
T  6047953 agttttaattttggtcccataagtcctataattatcattttggt-cctcaacttttgctccgtcattc 6048019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 323 - 447
Target Start/End: Complemental strand, 24517601 - 24517477
Alignment:
Q  323 taaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttgannnnnnnncttaaaagaggaccat 422  Q
    |||||||||| |||  || ||| |||||||| |||||| ||||||| ||||||| ||||| ||| |||||||||||         | |||||||||||||    
T  24517601 taaatgtctaaggtgaactaacattaagagttgtccactatagatcatattaatcatttttatttaaaccgtttgattatttttttaaaaagaggaccat 24517502  T
Q  423 tagattacgcatgtctattttatct 447  Q
    | ||||| ||| ||||||| |||||    
T  24517501 ttgattatgcaggtctattctatct 24517477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 326 - 366
Target Start/End: Original strand, 34350248 - 34350288
Alignment:
Q  326 atgtctatggtagaccaaccttaagagtggtccaccataga 366  Q
    ||||||||||| || ||||||||||||||||||||||||||    
T  34350248 atgtctatggtggatcaaccttaagagtggtccaccataga 34350288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 273
Target Start/End: Complemental strand, 7306336 - 7306289
Alignment:
Q  226 gttttcattttggtcccataactcttaaaatcatcattttggtccctc 273  Q
    |||||||||||||||| ||||||| |||||| | ||||||||||||||    
T  7306336 gttttcattttggtcctataactcgtaaaattaacattttggtccctc 7306289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 366
Target Start/End: Original strand, 23091468 - 23091527
Alignment:
Q  307 ctgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccataga 366  Q
    ||||||| ||||| |  ||||||||||||| ||||||| |||| ||||||||||||||||    
T  23091468 ctgttaagtttaatctcaaatgtctatggtggaccaactttaaaagtggtccaccataga 23091527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 273
Target Start/End: Complemental strand, 48528978 - 48528931
Alignment:
Q  226 gttttcattttggtcccataactcttaaaatcatcattttggtccctc 273  Q
    |||| ||||||||||||||||||| |||||||| |||||| |||||||    
T  48528978 gtttacattttggtcccataactcgtaaaatcaacattttagtccctc 48528931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 408 - 449
Target Start/End: Complemental strand, 3616791 - 3616750
Alignment:
Q  408 ttaaaagaggaccattagattacgcatgtctattttatctta 449  Q
    ||||| |||||||||||||||||||| || ||||||||||||    
T  3616791 ttaaaggaggaccattagattacgcaagtgtattttatctta 3616750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 353 - 398
Target Start/End: Original strand, 27556431 - 27556475
Alignment:
Q  353 tggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    ||||||||||||||||||||||||| |||||||| |||| ||||||    
T  27556431 tggtccaccatagatcctattaatt-ttttaatttaaacagtttga 27556475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 275
Target Start/End: Complemental strand, 27557772 - 27557723
Alignment:
Q  226 gttttcattttggtcccataactcttaaaatcatcattttggtccctcaa 275  Q
    |||||| |||||||||||||| |||||||||||||| |  ||||||||||    
T  27557772 gttttcgttttggtcccataagtcttaaaatcatcaatcgggtccctcaa 27557723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 315 - 396
Target Start/End: Original strand, 27814416 - 27814497
Alignment:
Q  315 tttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgttt 396  Q
    |||||| ||||||||||||||| ||||||| |||| ||||||||| | || | | |||||||| | ||||||  ||||||||    
T  27814416 tttaactctaaatgtctatggtggaccaactttaaaagtggtccatcgtaaaccttattaattttgttaattttaaccgttt 27814497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 6e-40; HSPs: 43)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 225 - 386
Target Start/End: Original strand, 10338772 - 10338933
Alignment:
Q  225 agttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttattcnnnnnnntccttgactgttaactttaacccta 324  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||| ||||||       ||  || |||||||||||||||  |    
T  10338772 agttttcattttggtcccataaattttaaaatcatcattttggtccctcaacgtttgctcccttattcaaaaaagtctctgcctgttaactttaacctca 10338871  T
Q  325 aatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaatt 386  Q
     ||||||||  |  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10338872 gatgtctataatgaaccaaccttaagagtggtccaccatagatcctattaattattttaatt 10338933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 4e-35
Query Start/End: Original strand, 225 - 398
Target Start/End: Complemental strand, 53194693 - 53194521
Alignment:
Q  225 agttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttattcnnnnnnntccttgactgttaactttaacccta 324  Q
    ||||||||||||||| |||||| | ||||||||||||||||||||| ||||||||||||  |||||||       |||| ||| ||||||||||||  ||    
T  53194693 agttttcattttggttccataagttttaaaatcatcattttggtccttcaacttttgctttgttattcaaaaaagtcct-gaccgttaactttaacttta 53194595  T
Q  325 aatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    ||| |||||||||||| || ||||| |||| |||||||||||| ||||||||||||||| || |||||||||||    
T  53194594 aatatctatggtagacaaatcttaaaagtgatccaccatagattctattaattattttattttaaaccgtttga 53194521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 225 - 392
Target Start/End: Original strand, 48083261 - 48083428
Alignment:
Q  225 agttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttattcnnnnnnntccttgactgttaactttaacccta 324  Q
    ||||||||||||| |||| ||| | ||||||||||||||||||||||| ||| |||||||||||||||       |   || | |||||||||||||  |    
T  48083261 agttttcattttgatcccttaagttttaaaatcatcattttggtcccttaacctttgctccgttattcaatttggttactggcggttaactttaaccaca 48083360  T
Q  325 aatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaacc 392  Q
    ||||||||||||  || |||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  48083361 aatgtctatggtgcactaaccttaagagtggtctaccatagatcctattaattattttaatttaaacc 48083428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 225 - 398
Target Start/End: Original strand, 10300974 - 10301141
Alignment:
Q  225 agttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttattcnnnnnnntccttgactgttaactttaacccta 324  Q
    ||||||||||||||| |||||| |||||||||||||| | |||||||||||| |||||||||||||||       ||      | ||||||||||||  |    
T  10300974 agttttcattttggttccataaatcttaaaatcatcaatctggtccctcaacgtttgctccgttattcaaaaaagtc------tattaactttaacctca 10301067  T
Q  325 aatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    ||| ||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||    
T  10301068 aatatctatggtgaaccaaccttaagagtgatccaccatagatcctattaattattttaatttaaactgtttga 10301141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 220 - 398
Target Start/End: Complemental strand, 14745287 - 14745109
Alignment:
Q  220 tattgagttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttattcnnnnnnntccttgactgttaactttaa 319  Q
    |||| ||||| ||| ||||||||||||||| |||| ||| | ||||||||||||   |||||||| |||| ||       ||| |||| || ||||||||    
T  14745287 tattcagtttacatcttggtcccataactcgtaaagtcaacgttttggtccctcttgttttgctcagttagtcaaaaaagtccatgaccgtcaactttaa 14745188  T
Q  320 ccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    ||| |||| ||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||    
T  14745187 ccccaaatatctgtggtggaccaaccttaagagtggttcaccatagatcctattaattattttaatttaaactgtttga 14745109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 339 - 470
Target Start/End: Original strand, 26886421 - 26886551
Alignment:
Q  339 accaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttgannnnnnnncttaaaagaggaccattagattacgcatgtct 438  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||         ||||||| | |||||| ||||| ||||||||    
T  26886421 accaaccttaagagtggtccaccataaatcctattaattattttaatttaaaccgtttgatttttttt-ttaaaagggaaccattggattatgcatgtct 26886519  T
Q  439 attttatcttatgatgtatcaccaacgcctaa 470  Q
    ||||||||||| |||||| ||||||| |||||    
T  26886520 attttatcttacgatgtaccaccaacacctaa 26886551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 326 - 470
Target Start/End: Original strand, 35371043 - 35371187
Alignment:
Q  326 atgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttgannnnnnnncttaaaagaggaccattag 425  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||  |||||         | ||||||| |||||| |    
T  35371043 atgtttatggtggaccaaccttaagagtggtccaccatagatcctattaattattttaattttaactttttgattttttttttaaaaagagaaccattgg 35371142  T
Q  426 attacgcatgtctattttatcttatgatgtatcaccaacgcctaa 470  Q
    |||| ||| ||||||||||||||| |||||| ||||||| |||||    
T  35371143 attaggcaagtctattttatcttacgatgtaccaccaacacctaa 35371187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 326 - 398
Target Start/End: Complemental strand, 38242496 - 38242424
Alignment:
Q  326 atgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    ||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||    
T  38242496 atgtctatggtggaccaaccttaagagtggtccaccataaattctattaattattttaatttaaaccgtttga 38242424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 300 - 398
Target Start/End: Original strand, 42684985 - 42685083
Alignment:
Q  300 tccttgactgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    |||||||||||||| |||||||| |||||||||||||  ||||| |||||||||||||||||||| | | |||||| | |||||||| |||||||||||    
T  42684985 tccttgactgttaagtttaaccccaaatgtctatggtgaaccaagcttaagagtggtccaccataaaccttattaaattttttaatttaaaccgtttga 42685083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 326 - 470
Target Start/End: Complemental strand, 10732109 - 10731966
Alignment:
Q  326 atgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttgannnnnnnncttaaaagaggaccattag 425  Q
    ||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||   |||||||||         |||| | || |||||| |    
T  10732109 atgtctatggtggaccaacctttagagcggtccaccatagatcctattaattattttaatttcgaccgtttgatttttctt-ttaacaaagaaccattgg 10732011  T
Q  426 attacgcatgtctattttatcttatgatgtatcaccaacgcctaa 470  Q
    |||| ||| ||||||||||||||| || ||||||||||| |||||    
T  10732010 attaggcaagtctattttatcttaagaagtatcaccaacacctaa 10731966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 331 - 398
Target Start/End: Original strand, 3208625 - 3208692
Alignment:
Q  331 tatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    |||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||    
T  3208625 tatggtggaccaaccttaagagtggtccaccataaatcctattaattattataatttaaaccgtttga 3208692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 306 - 398
Target Start/End: Original strand, 49379816 - 49379909
Alignment:
Q  306 actgttaactttaaccct-aaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    |||||||||||||||||  ||||||||||||| |||| || |||| | |||||||||||||||||||||||||||| ||||| |||| ||||||    
T  49379816 actgttaactttaacccccaaatgtctatggtggaccgactttaaaaatggtccaccatagatcctattaattattctaatttaaactgtttga 49379909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 326 - 386
Target Start/End: Complemental strand, 27841690 - 27841630
Alignment:
Q  326 atgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaatt 386  Q
    |||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  27841690 atgtttatggtggaccaaccttaagagtggtccaccatagatcctaataattattttaatt 27841630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 326 - 470
Target Start/End: Complemental strand, 34819265 - 34819122
Alignment:
Q  326 atgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttgannnnnnnncttaaaagaggaccattag 425  Q
    |||||||| || || |||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||          | |||| || |||||| |    
T  34819265 atgtctatagtggatcaaccttaagagtggtccaccatagatcctattacttattttaatttaaactgtttg-ttttttttataaaaaaagaaccattgg 34819167  T
Q  426 attacgcatgtctattttatcttatgatgtatcaccaacgcctaa 470  Q
    |||| ||| ||||||||||||||||| |||| ||||||| |||||    
T  34819166 attaggcaagtctattttatcttatggtgtaccaccaacacctaa 34819122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 306 - 396
Target Start/End: Original strand, 13621034 - 13621125
Alignment:
Q  306 actgttaactttaacc-ctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgttt 396  Q
    |||||||||||||||| | ||||||||||||| |||| || | || | |||||||||||||||||||||||||||| ||||| |||||||||    
T  13621034 actgttaactttaacctccaaatgtctatggtggaccgacttaaaaaatggtccaccatagatcctattaattattctaatttaaaccgttt 13621125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 227 - 289
Target Start/End: Complemental strand, 10301898 - 10301836
Alignment:
Q  227 ttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgtta 289  Q
    |||||||||||||||||||| |||||||||||||| | |||||| ||||||||||||||||||    
T  10301898 ttttcattttggtcccataagtcttaaaatcatcaatatggtccttcaacttttgctccgtta 10301836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 325 - 395
Target Start/End: Complemental strand, 53614254 - 53614184
Alignment:
Q  325 aatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtt 395  Q
    |||||||||||| || || |||||||||||||||||||||||||||| ||||||||||||||  |||||||    
T  53614254 aatgtctatggtggatcatccttaagagtggtccaccatagatcctagtaattattttaatttcaaccgtt 53614184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 225 - 375
Target Start/End: Original strand, 7270357 - 7270507
Alignment:
Q  225 agttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttattcnnnnnnntccttgactgttaactttaacccta 324  Q
    |||||||||||| ||||||||| ||||||||||| |||||||||||||||| ||   |||  ||| |        ||| | || |||||||||||||  |    
T  7270357 agttttcatttttgtcccataagtcttaaaatcaacattttggtccctcaagttaacctctattaatgaaattaatccctaaccgttaactttaacctca 7270456  T
Q  325 aatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaa 375  Q
    ||||||| | || |||||||||||||||||||| |||||||||| ||||||    
T  7270457 aatgtctgtagtggaccaaccttaagagtggtctaccatagatcttattaa 7270507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 234 - 332
Target Start/End: Complemental strand, 54110356 - 54110258
Alignment:
Q  234 tttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttattcnnnnnnntccttgactgttaactttaaccctaaatgtcta 332  Q
    ||||||| ||||| |||||||||||||||||| |||||||| ||||||||| |||||||       | |||||||||||||||||||  ||||||||||    
T  54110356 tttggtctcataagtcttaaaatcatcattttagtccctcatcttttgctctgttattcaaaaaggttcttgactgttaactttaactttaaatgtcta 54110258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 331 - 381
Target Start/End: Complemental strand, 3455600 - 3455550
Alignment:
Q  331 tatggtagaccaaccttaagagtggtccaccatagatcctattaattattt 381  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  3455600 tatggtggaccaaccttaagagtggtccaccatagatcatattaattattt 3455550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 226 - 332
Target Start/End: Complemental strand, 37416519 - 37416413
Alignment:
Q  226 gttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttattcnnnnnnntccttgactgttaactttaaccctaa 325  Q
    |||||||||||||| ||||||||| |||||||| ||||||||||||||   ||||||||||||| ||       | ||| |||||||||||||||  |||    
T  37416519 gttttcattttggttccataactcataaaatcaacattttggtccctcttgttttgctccgttagtcaaaaagattcttaactgttaactttaactttaa 37416420  T
Q  326 atgtcta 332  Q
    |||||||    
T  37416419 atgtcta 37416413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 346 - 470
Target Start/End: Complemental strand, 41264613 - 41264490
Alignment:
Q  346 ttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttgannnnnnnncttaaaagaggaccattagattacgcatgtctattttat 445  Q
    ||||||||||| |||||||||||||||||||||||||||||   |||||||||         | ||||||| ||||||  |||| ||| |||||||||||    
T  41264613 ttaagagtggtacaccatagatcctattaattattttaatttcgaccgtttgatttttttt-taaaaagagaaccattgaattaagcaggtctattttat 41264515  T
Q  446 cttatgatgtatcaccaacgcctaa 470  Q
    |||| |||||| ||||||| |||||    
T  41264514 cttacgatgtaccaccaacacctaa 41264490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 310 - 373
Target Start/End: Complemental strand, 11224839 - 11224776
Alignment:
Q  310 ttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctatt 373  Q
    |||||||||| || ||||||  ||||| ||||||||||||||||||||||||||||||| ||||    
T  11224839 ttaactttaatcccaaatgttcatggtggaccaaccttaagagtggtccaccatagatcatatt 11224776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 225 - 292
Target Start/End: Complemental strand, 44603124 - 44603057
Alignment:
Q  225 agttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttattc 292  Q
    |||||| ||||||||||||||| ||||||||| |||| |   ||||||||||||||||||||||||||    
T  44603124 agtttttattttggtcccataaatcttaaaataatcaatcgagtccctcaacttttgctccgttattc 44603057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 331
Target Start/End: Original strand, 37415031 - 37415135
Alignment:
Q  227 ttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttattcnnnnnnntccttgactgttaactttaaccctaaa 326  Q
    |||||||||||||| |||||||| |||||||| ||||||||| ||||   ||||||||||||| ||       |||||  ||||||||||||||  ||||    
T  37415031 ttttcattttggtctcataactcgtaaaatcaacattttggttcctcttgttttgctccgttagtcaaaaaggtccttagctgttaactttaactttaaa 37415130  T
Q  327 tgtct 331  Q
    |||||    
T  37415131 tgtct 37415135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 275
Target Start/End: Complemental strand, 46370249 - 46370206
Alignment:
Q  232 attttggtcccataactcttaaaatcatcattttggtccctcaa 275  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||    
T  46370249 attttggtcccataagtcttaaaatcatcattttggtccttcaa 46370206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 289
Target Start/End: Complemental strand, 10340049 - 10339988
Alignment:
Q  227 ttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgtta 289  Q
    |||||||||||||| ||||  ||||||||||||||  ||||||| ||||||||||||||||||    
T  10340049 ttttcattttggtctcatatttcttaaaatcatca-attggtccttcaacttttgctccgtta 10339988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 391
Target Start/End: Complemental strand, 28909604 - 28909523
Alignment:
Q  310 ttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaac 391  Q
    |||| |||||||| |||| ||| ||||  ||||  ||||||  ||||||||||||||||||||||||| |||||||| ||||    
T  28909604 ttaagtttaaccccaaatatctgtggtgaaccactcttaaggttggtccaccatagatcctattaatttttttaatttaaac 28909523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 408 - 449
Target Start/End: Original strand, 50809565 - 50809606
Alignment:
Q  408 ttaaaagaggaccattagattacgcatgtctattttatctta 449  Q
    ||||||||| |||||| |||||||||||||||||||||||||    
T  50809565 ttaaaagagaaccattggattacgcatgtctattttatctta 50809606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 408 - 449
Target Start/End: Complemental strand, 50810806 - 50810765
Alignment:
Q  408 ttaaaagaggaccattagattacgcatgtctattttatctta 449  Q
    ||||| |||||||||| |||||||||||||||||||||||||    
T  50810806 ttaaaggaggaccattggattacgcatgtctattttatctta 50810765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 408 - 449
Target Start/End: Original strand, 50865058 - 50865099
Alignment:
Q  408 ttaaaagaggaccattagattacgcatgtctattttatctta 449  Q
    ||||| |||||||||| |||||||||||||||||||||||||    
T  50865058 ttaaaggaggaccattggattacgcatgtctattttatctta 50865099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 408 - 449
Target Start/End: Complemental strand, 50866297 - 50866256
Alignment:
Q  408 ttaaaagaggaccattagattacgcatgtctattttatctta 449  Q
    ||||||||| |||||| |||||||||||||||||||||||||    
T  50866297 ttaaaagagaaccattggattacgcatgtctattttatctta 50866256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 310 - 398
Target Start/End: Original strand, 53420436 - 53420524
Alignment:
Q  310 ttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    |||| |||||||  ||||||||||||| ||||||| |||| |||| ||||||||||| | ||||||   |||||||| |||| ||||||    
T  53420436 ttaagtttaaccacaaatgtctatggtggaccaactttaaaagtgatccaccatagaccttattaaactttttaatttaaactgtttga 53420524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 331 - 398
Target Start/End: Complemental strand, 12107954 - 12107888
Alignment:
Q  331 tatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    |||||| |||||||||||| |||||||||||||||| ||||||  || |||||||  |||||||||||    
T  12107954 tatggtggaccaaccttaaaagtggtccaccatagaccctatt-ttttttttaatataaaccgtttga 12107888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 398
Target Start/End: Complemental strand, 20314767 - 20314673
Alignment:
Q  304 tgactgttaactttaaccctaaatgtctatggtagaccaacctta-agagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    |||||||||| |||||| | ||||||||||| ||||||||| ||| ||| | |||||||||||| | ||||||||  ||||||| ||||| |||||    
T  20314767 tgactgttaagtttaactccaaatgtctatgttagaccaacattataga-tagtccaccatagaccttattaatttatttaatttaaaccatttga 20314673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 272
Target Start/End: Original strand, 54108573 - 54108620
Alignment:
Q  225 agttttcattttggtcccataactcttaaaatcatcattttggtccct 272  Q
    ||||||| |||||||||||||| ||||||||| ||||||||| |||||    
T  54108573 agttttcgttttggtcccataagtcttaaaattatcattttgatccct 54108620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 283
Target Start/End: Original strand, 46368846 - 46368900
Alignment:
Q  229 ttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgct 283  Q
    |||||||||||| |||||  |||||||||||||||||| ||| |||| |||||||    
T  46368846 ttcattttggtctcataaggcttaaaatcatcattttgatccttcaatttttgct 46368900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 384
Target Start/End: Complemental strand, 55328300 - 55328227
Alignment:
Q  310 ttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaa 384  Q
    |||| ||||||| ||||||||||  || || ||||||||| ||||||||||| || || ||||||||||||||||    
T  55328300 ttaagtttaaccttaaatgtctacagttgatcaaccttaaaagtggtccaccgtatat-ctattaattattttaa 55328227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 305 - 386
Target Start/End: Original strand, 10730998 - 10731079
Alignment:
Q  305 gactgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaatt 386  Q
    ||||||||||||||||   |||||||||||||  ||||||||||| ||||||| | |||| | | |||||||| | ||||||    
T  10730998 gactgttaactttaacttcaaatgtctatggtgaaccaaccttaaaagtggtctatcatataccttattaattttgttaatt 10731079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 255
Target Start/End: Complemental strand, 40241788 - 40241759
Alignment:
Q  226 gttttcattttggtcccataactcttaaaa 255  Q
    ||||||||||||||||||||||||||||||    
T  40241788 gttttcattttggtcccataactcttaaaa 40241759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 308 - 357
Target Start/End: Original strand, 41263754 - 41263803
Alignment:
Q  308 tgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtc 357  Q
    ||||||||||||| |||||| |||||||| || ||||||||| |||||||    
T  41263754 tgttaactttaactctaaatatctatggtggatcaaccttaaaagtggtc 41263803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 353 - 398
Target Start/End: Complemental strand, 44602997 - 44602953
Alignment:
Q  353 tggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    ||||| ||||||||||||||||||| |||||||| |||||||||||    
T  44602997 tggtctaccatagatcctattaatt-ttttaatttaaaccgtttga 44602953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 270
Target Start/End: Complemental strand, 48085035 - 48084990
Alignment:
Q  225 agttttcattttggtcccataactcttaaaatcatcattttggtcc 270  Q
    |||||| ||||||||| | ||| |||||||||||||||||||||||    
T  48085035 agtttttattttggtctcttaagtcttaaaatcatcattttggtcc 48084990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 73; Significance: 9e-33; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 73; E-Value: 9e-33
Query Start/End: Original strand, 226 - 447
Target Start/End: Complemental strand, 8271 - 8051
Alignment:
Q  226 gttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttattcnnnnnnntccttgactgttaactttaaccctaa 325  Q
    |||| ||||||||||||||||||| |||||||| ||||||||||||||   |||| |||||||| ||       ||| | || ||||| |||||||| ||    
T  8271 gtttacattttggtcccataactcgtaaaatcaacattttggtccctctcgttttactccgttagtcaatttgatccctaaccgttaattttaaccccaa 8172  T
Q  326 atgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttgannnnnnnncttaaaagaggaccattag 425  Q
    ||||||||||| || |||||||||||| |||||| |||||||  ||||||||||||||||| |||||||||||         |||||||||||||||| |    
T  8171 atgtctatggtggatcaaccttaagag-ggtccatcatagattatattaattattttaatttaaaccgtttgattgttttttttaaaagaggaccatttg 8073  T
Q  426 attacgcatgtctattttatct 447  Q
    || | ||| |||||||||||||    
T  8072 atcatgcaagtctattttatct 8051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 3e-26; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 227 - 292
Target Start/End: Complemental strand, 23233776 - 23233711
Alignment:
Q  227 ttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttattc 292  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  23233776 ttttcattttggtcccataagtcttaaaatcatcattttggtccctcaacttttgctccgttattc 23233711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 308 - 392
Target Start/End: Original strand, 43033198 - 43033282
Alignment:
Q  308 tgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaacc 392  Q
    |||||| |||||||  ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||    
T  43033198 tgttaagtttaacctcaaatgtctatggtagaccaaccttaagagtggtccaccataaaccctattaattattttaatttaaacc 43033282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 326 - 397
Target Start/End: Complemental strand, 11317348 - 11317277
Alignment:
Q  326 atgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttg 397  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||    
T  11317348 atgtctatggtagaccaaccttaagagtggtctaccatagatcctattaattattttaatttaaatcgtttg 11317277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 307 - 398
Target Start/End: Complemental strand, 4921059 - 4920967
Alignment:
Q  307 ctgttaactttaaccct-aaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    ||||||||||||||||  ||||||||||||||||||||| |||| | |||||||||||| ||||||||||||||| ||||| |||||||||||    
T  4921059 ctgttaactttaacccccaaatgtctatggtagaccaactttaaaaatggtccaccataaatcctattaattattctaatttaaaccgtttga 4920967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 306 - 398
Target Start/End: Original strand, 29219499 - 29219594
Alignment:
Q  306 actgttaactttaaccctaaatg---tctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    |||||||| |||||||| |||||   |||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||  ||||||||||    
T  29219499 actgttaagtttaaccccaaatgatgtctatggtggaccaatcttaaaagtggtccaccatagatcctattaattattttaatttcaaccgtttga 29219594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 306 - 398
Target Start/End: Original strand, 29332798 - 29332893
Alignment:
Q  306 actgttaactttaaccctaaatg---tctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    |||||||| |||||||| |||||   |||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||  ||||||||||    
T  29332798 actgttaagtttaaccccaaatgatgtctatggtggaccaatcttaaaagtggtccaccatagatcctattaattattttaatttcaaccgtttga 29332893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 225 - 398
Target Start/End: Original strand, 35903542 - 35903714
Alignment:
Q  225 agttttcattttggtcccataactcttaaaa-tcatcattttggtccctcaacttttgctccgttattcnnnnnnntccttgactgttaactttaaccct 323  Q
    ||||||||||||||||||||||||  ||||| ||||  |||||||||||||| | |  |||||| | ||       |||||| ||||||| ||||||||     
T  35903542 agttttcattttggtcccataactaataaaagtcatg-ttttggtccctcaattatatctccgtcagtcaaataaatccttggctgttaagtttaacccc 35903640  T
Q  324 aaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    ||||||||||| ||||  | | || ||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  35903641 aaatgtctatgatagatta-cttttagagtggtccaccatagatcctattaaatattttaatttaaaccgtttga 35903714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 326 - 398
Target Start/End: Complemental strand, 42641841 - 42641769
Alignment:
Q  326 atgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    ||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||    
T  42641841 atgtctatggtgggccaaccttaagagtggtctaccatagatcctattaattattttaatttaaactgtttga 42641769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 329 - 447
Target Start/End: Original strand, 8320895 - 8321013
Alignment:
Q  329 tctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttgannnnnnnncttaaaagaggaccattagatt 428  Q
    |||||||| ||||| ||||||||| ||||||||||||||  ||||||||||||||||| |||||||||||         ||||||||||| |||| |||     
T  8320895 tctatggtggaccatccttaagagcggtccaccatagattatattaattattttaatttaaaccgtttgattgttttttttaaaagaggaacatttgatc 8320994  T
Q  429 acgcatgtctattttatct 447  Q
    ||||| |||||||||||||    
T  8320995 acgcaagtctattttatct 8321013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 304 - 398
Target Start/End: Original strand, 34464081 - 34464175
Alignment:
Q  304 tgactgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    |||||||||| |||||||| |||||||||| || ||||||||||||||||||||||||||||| | |||||  | |||||||| |||| ||||||    
T  34464081 tgactgttaagtttaaccccaaatgtctatcgttgaccaaccttaagagtggtccaccatagaccttattagattttttaatttaaactgtttga 34464175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 316 - 398
Target Start/End: Complemental strand, 34513544 - 34513462
Alignment:
Q  316 ttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    ||||||| |||||| |||||| ||||||||||||||||| ||||||||||| | |||||||| |||||||| |||||||||||    
T  34513544 ttaaccccaaatgtatatggttgaccaaccttaagagtgatccaccatagaccttattaatttttttaatttaaaccgtttga 34513462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 309 - 398
Target Start/End: Complemental strand, 6030469 - 6030378
Alignment:
Q  309 gttaactttaaccctaa--atgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    |||||||||||||| ||  ||||||| ||| ||||||||||||||||| || ||||||||||||||||||  |||||||| |||||||||||    
T  6030469 gttaactttaacccaaatgatgtctacggtggaccaaccttaagagtgatctaccatagatcctattaatatttttaatttaaaccgtttga 6030378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 326 - 398
Target Start/End: Complemental strand, 18616985 - 18616913
Alignment:
Q  326 atgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    ||||||||||| |||||  ||||| ||||||||||||||||||||||||||||||||||||  ||||||||||    
T  18616985 atgtctatggtggaccagtcttaaaagtggtccaccatagatcctattaattattttaatttcaaccgtttga 18616913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 326 - 398
Target Start/End: Original strand, 32469285 - 32469357
Alignment:
Q  326 atgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    |||| |||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||| |||||    
T  32469285 atgtatatggtggaccaactttaagagtggtccactatagatcctattaattattttaatttaaaccctttga 32469357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 224 - 277
Target Start/End: Original strand, 23231573 - 23231626
Alignment:
Q  224 gagttttcattttggtcccataactcttaaaatcatcattttggtccctcaact 277  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  23231573 gagtttttattttggtcccataagtcttaaaatcatcattttggtccctcaact 23231626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 658 - 739
Target Start/End: Complemental strand, 19239212 - 19239127
Alignment:
Q  658 tagagaaaataatttagaaaatcataacccattgaattga----ttttcattctcgtcaatatcgatacccatttaactttctttt 739  Q
    ||||||| ||||||||||||||||||||||||| ||||||     |||||||||| ||||| || |||||||||||||||||||||    
T  19239212 tagagaagataatttagaaaatcataacccattaaattgaatggatttcattctcatcaatgtcaatacccatttaactttctttt 19239127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 307 - 374
Target Start/End: Complemental strand, 16295217 - 16295150
Alignment:
Q  307 ctgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctatta 374  Q
    ||||||||||||||  ||||||| | |||| |||||||||||| ||||||||||||||||||||||||    
T  16295217 ctgttaactttaactttaaatgtttttggtggaccaaccttaacagtggtccaccatagatcctatta 16295150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 308 - 394
Target Start/End: Complemental strand, 30749323 - 30749238
Alignment:
Q  308 tgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgt 394  Q
    |||||| |||||||  |||||||||||||| |||||||||||||||||| ||| | ||  ||||||||||||||||||| |||||||    
T  30749323 tgttaagtttaacctcaaatgtctatggta-accaaccttaagagtggttcactacagggcctattaattattttaatttaaaccgt 30749238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 306 - 398
Target Start/End: Complemental strand, 28611254 - 28611162
Alignment:
Q  306 actgttaactttaaccct-aaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    |||||| ||||||||||  ||||||||||||| |||| || |||| | |||||||| ||||||||||||||||| ||||||| |||||||||||    
T  28611254 actgtttactttaacccccaaatgtctatggtggaccgactttaaaaatggtccactatagatcctattaatta-tttaatttaaaccgtttga 28611162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 324 - 377
Target Start/End: Complemental strand, 43034453 - 43034400
Alignment:
Q  324 aaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaatt 377  Q
    ||||||||||||| || |||| ||||||||||||||||||||||||||||||||    
T  43034453 aaatgtctatggtggatcaactttaagagtggtccaccatagatcctattaatt 43034400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 346 - 386
Target Start/End: Complemental strand, 1085348 - 1085308
Alignment:
Q  346 ttaagagtggtccaccatagatcctattaattattttaatt 386  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  1085348 ttaagagtggtacaccatagatcctattaattattttaatt 1085308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 326 - 398
Target Start/End: Original strand, 17459390 - 17459462
Alignment:
Q  326 atgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    ||||||||||| ||| || ||||| |||| || | |||||||||||||||||||| ||||| |||||||||||    
T  17459390 atgtctatggtggacgaatcttaaaagtgatctaacatagatcctattaattattataatttaaaccgtttga 17459462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 304 - 398
Target Start/End: Original strand, 11547771 - 11547867
Alignment:
Q  304 tgactgttaactttaaccctaaatg---tctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    |||||||||| |||||||| |||||   |||||  | ||||||||||| ||||||||||||||||||| |||||| | || ||||| |||||||||||    
T  11547771 tgactgttaagtttaaccccaaatgatgtctatcatggaccaaccttaggagtggtccaccatagatcgtattaaat-ttataatttaaaccgtttga 11547867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 324 - 398
Target Start/End: Original strand, 34467639 - 34467713
Alignment:
Q  324 aaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    ||||||||||| | ||| ||||||||||||||||||||||| | | |||||| | |||||||| |||| ||||||    
T  34467639 aaatgtctatgatggacaaaccttaagagtggtccaccataaaccttattaagttttttaatttaaactgtttga 34467713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 368
Target Start/End: Complemental strand, 12359679 - 12359618
Alignment:
Q  307 ctgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatc 368  Q
    ||||||||||||||| ||| |||||||||| || ||| | |||||||| |||||||||||||    
T  12359679 ctgttaactttaaccttaagtgtctatggtggatcaatcgtaagagtgatccaccatagatc 12359618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 342 - 386
Target Start/End: Original strand, 30748630 - 30748674
Alignment:
Q  342 aaccttaagagtggtccaccatagatcctattaattattttaatt 386  Q
    ||||||||||||||  ||||||||||| |||||||||||||||||    
T  30748630 aaccttaagagtggcacaccatagatcatattaattattttaatt 30748674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 391
Target Start/End: Original strand, 34512926 - 34513012
Alignment:
Q  304 tgactgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaac 391  Q
    |||||||||| ||||||| ||| ||| |||||| || ||||| |||||||||||||||||| | | |||||| | |||||||| ||||    
T  34512926 tgactgttaagtttaaccttaa-tgtatatggtggatcaaccataagagtggtccaccatataccttattaaattttttaatttaaac 34513012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 272
Target Start/End: Complemental strand, 1149269 - 1149223
Alignment:
Q  226 gttttcattttggtcccataactcttaaaatcatcattttggtccct 272  Q
    |||||||||||||||||||||||  |||||||| | |||||||||||    
T  1149269 gttttcattttggtcccataacttctaaaatcaacgttttggtccct 1149223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 418 - 456
Target Start/End: Original strand, 35903767 - 35903805
Alignment:
Q  418 accattagattacgcatgtctattttatcttatgatgta 456  Q
    ||||||||||||  |||||||||||||||||||||||||    
T  35903767 accattagattatacatgtctattttatcttatgatgta 35903805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 308 - 357
Target Start/End: Original strand, 1083104 - 1083153
Alignment:
Q  308 tgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtc 357  Q
    ||||||||||||| |||||| |||||||| || ||||||||| |||||||    
T  1083104 tgttaactttaactctaaatatctatggtggatcaaccttaaaagtggtc 1083153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 359 - 396
Target Start/End: Complemental strand, 16290742 - 16290705
Alignment:
Q  359 accatagatcctattaattattttaattaaaaccgttt 396  Q
    |||||||||||||||||||||||||||| ||| |||||    
T  16290742 accatagatcctattaattattttaatttaaatcgttt 16290705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 408 - 449
Target Start/End: Complemental strand, 43034379 - 43034338
Alignment:
Q  408 ttaaaagaggaccattagattacgcatgtctattttatctta 449  Q
    |||||||| ||||||| ||||| |||||||||||||||||||    
T  43034379 ttaaaagatgaccattggattatgcatgtctattttatctta 43034338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 61; Significance: 1e-25; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 326 - 398
Target Start/End: Complemental strand, 43554 - 43482
Alignment:
Q  326 atgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  43554 atgtctatggtggaccaatcttaagagtggtccaccatagatcctattaattattttaatttaaaccgtttga 43482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 57; Significance: 3e-23; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 326 - 398
Target Start/End: Complemental strand, 54164 - 54092
Alignment:
Q  326 atgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||    
T  54164 atgtctatggtggaccaaccttaaaagtggtccaccatagatcctattaattattttaatttaaactgtttga 54092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 3e-23; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 326 - 398
Target Start/End: Complemental strand, 7311705 - 7311633
Alignment:
Q  326 atgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    |||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  7311705 atgtctatggtgaaccaaccttaagagtggtccaccataaatcctattaattattttaatttaaaccgtttga 7311633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 306 - 398
Target Start/End: Original strand, 11722900 - 11722993
Alignment:
Q  306 actgttaactttaaccct-aaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    |||||||||||||||||  ||||||||||||| |||| || |||| | |||||||||||||||||||||||||||| ||||| |||||||||||    
T  11722900 actgttaactttaacccccaaatgtctatggtggaccgactttaaaaatggtccaccatagatcctattaattattctaatttaaaccgtttga 11722993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 326 - 398
Target Start/End: Original strand, 17837752 - 17837824
Alignment:
Q  326 atgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    ||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  17837752 atgtctatggtggacaaacattaagagtggtccaccatagatcctattaattattttaatttcaaccgtttga 17837824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 339 - 470
Target Start/End: Complemental strand, 18346717 - 18346588
Alignment:
Q  339 accaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttgannnnnnnncttaaaagaggaccattagattacgcatgtct 438  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||         |||||||   |||||| ||||| ||| ||||    
T  18346717 accaaccttaagagtggtccactataaatcctattaattattttaatttaaaccgtttgattttttt--ttaaaagtaaaccattggattatgcaagtct 18346620  T
Q  439 attttatcttatgatgtatcaccaacgcctaa 470  Q
    ||||||||||| |||||| ||||||| |||||    
T  18346619 attttatcttacgatgtaccaccaacacctaa 18346588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 326 - 464
Target Start/End: Complemental strand, 29381710 - 29381573
Alignment:
Q  326 atgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttgannnnnnnncttaaaagaggaccattag 425  Q
    |||||| |||| ||| ||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||        |  ||||||  |||||| |    
T  29381710 atgtctgtggtggacaaaccttaagagtgatccaccatagatcctattaattattttaatttcaaccgtttgattttttttc-aaaaagataaccattgg 29381612  T
Q  426 attacgcatgtctattttatcttatgatgtatcaccaac 464  Q
    |||| ||| ||||||||||||||| |||||| |||||||    
T  29381611 attaggcaggtctattttatcttacgatgtaccaccaac 29381573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 309 - 398
Target Start/End: Original strand, 11967334 - 11967423
Alignment:
Q  309 gttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    |||||||||||||  |||||||||| || |||||||||| |||| |||||| |||||||| ||||||||||||||||| |||| ||||||    
T  11967334 gttaactttaacctcaaatgtctattgtggaccaaccttgagaggggtccatcatagatcatattaattattttaatttaaactgtttga 11967423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 306 - 374
Target Start/End: Original strand, 12669838 - 12669906
Alignment:
Q  306 actgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctatta 374  Q
    ||||||||||||||||  |||||| |||||| ||||||||||||||||||||||||||||||| |||||    
T  12669838 actgttaactttaacctcaaatgtgtatggtggaccaaccttaagagtggtccaccatagatcatatta 12669906  T

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Target: chr6; HSP #8
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 227 - 292
Target Start/End: Complemental strand, 18242390 - 18242325
Alignment:
Q  227 ttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttattc 292  Q
    |||| ||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||    
T  18242390 tttttattctggtcccataagtcttaaaatcatcaatttggtccctcaacttttgctccattattc 18242325  T

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Target: chr6; HSP #9
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 341 - 398
Target Start/End: Original strand, 23392365 - 23392422
Alignment:
Q  341 caaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||    
T  23392365 caaccttaaaagtggtccaccatagatcctattaattattttaatttcaaccgtttga 23392422  T

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Target: chr6; HSP #10
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 300 - 364
Target Start/End: Complemental strand, 32507033 - 32506969
Alignment:
Q  300 tccttgactgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccata 364  Q
    |||||||||||||| |||||||| |||| |||||||| |||||||||||||||||||| ||||||    
T  32507033 tccttgactgttaagtttaaccccaaatatctatggtggaccaaccttaagagtggtctaccata 32506969  T

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Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 327 - 386
Target Start/End: Complemental strand, 5187601 - 5187542
Alignment:
Q  327 tgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaatt 386  Q
    ||||||| || |||||||||||| |||||| |||||||||||||||||||||| ||||||    
T  5187601 tgtctatagtggaccaaccttaaaagtggttcaccatagatcctattaattatattaatt 5187542  T

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Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 225 - 289
Target Start/End: Original strand, 18240433 - 18240498
Alignment:
Q  225 agttttcattttggtcccataactcttaaaa-tcatcattttggtccctcaacttttgctccgtta 289  Q
    ||||||||||||| |||||||  |||||||| |||||| |||||||||||||||||||||| ||||    
T  18240433 agttttcattttgatcccatatgtcttaaaaatcatcaatttggtccctcaacttttgctctgtta 18240498  T

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Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 398
Target Start/End: Original strand, 32505785 - 32505875
Alignment:
Q  308 tgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaa-ttaaaaccgtttga 398  Q
    |||||| |||||||| ||||||||||  | ||| ||| ||||||||||||||||||||| | |||||| | |||||| || |||||||||||    
T  32505785 tgttaagtttaaccccaaatgtctataatggac-aacattaagagtggtccaccatagaccttattaaattttttaagtttaaaccgtttga 32505875  T

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Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 272
Target Start/End: Original strand, 30231513 - 30231559
Alignment:
Q  226 gttttcattttggtcccataactcttaaaatcatcattttggtccct 272  Q
    |||||||||||||||||||||||  |||||||| | |||||||||||    
T  30231513 gttttcattttggtcccataacttctaaaatcaacgttttggtccct 30231559  T

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Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 408 - 449
Target Start/End: Original strand, 232318 - 232359
Alignment:
Q  408 ttaaaagaggaccattagattacgcatgtctattttatctta 449  Q
    ||||| ||| |||||| |||||||||||||||||||||||||    
T  232318 ttaaaggagaaccattggattacgcatgtctattttatctta 232359  T

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Target: scaffold0013 (Bit Score: 56; Significance: 1e-22; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 306 - 398
Target Start/End: Original strand, 32685 - 32779
Alignment:
Q  306 actgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctatta--attattttaattaaaaccgtttga 398  Q
    |||||||||||||||| |||||||||||||| ||||||||||| |||||||||| ||||||||||||||   || |||||||| |||||||||||    
T  32685 actgttaactttaaccttaaatgtctatggtggaccaaccttaggagtggtccatcatagatcctattattttttttttaatttaaaccgtttga 32779  T

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Target: scaffold0011 (Bit Score: 56; Significance: 1e-22; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 304 - 395
Target Start/End: Original strand, 127546 - 127637
Alignment:
Q  304 tgactgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtt 395  Q
    |||| |||||||||||||  |||||||||||||  | ||||||||||||||||||||||||||||||||||||  |||||||| ||||||||    
T  127546 tgacagttaactttaacctcaaatgtctatggtgaaacaaccttaagagtggtccaccatagatcctattaatgtttttaatttaaaccgtt 127637  T

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Target: scaffold0031 (Bit Score: 47; Significance: 3e-17; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 309 - 375
Target Start/End: Original strand, 124086 - 124152
Alignment:
Q  309 gttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaa 375  Q
    ||||| |||||||| |||| |||||||| ||||||||||||||||||||||||||||||| ||||||    
T  124086 gttaagtttaaccccaaatatctatggtggaccaaccttaagagtggtccaccatagatcgtattaa 124152  T

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Target: scaffold0031; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 338 - 398
Target Start/End: Complemental strand, 125200 - 125139
Alignment:
Q  338 gaccaaccttaagagtggtccaccatagatcctatt-aattattttaattaaaaccgtttga 398  Q
    |||||||||||| |||||||||||||||| | |||| |||| |||||||| ||||| |||||    
T  125200 gaccaaccttaaaagtggtccaccatagaccttattaaatttttttaatttaaaccctttga 125139  T

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Target: scaffold0034 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 331 - 398
Target Start/End: Original strand, 108654 - 108721
Alignment:
Q  331 tatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    |||||| |||||||||||| ||||||||||||||||| |||||||||||| ||||| ||||| |||||    
T  108654 tatggtggaccaaccttaaaagtggtccaccatagatgctattaattattataatttaaaccttttga 108721  T

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Target: scaffold2071 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold2071
Description:

Target: scaffold2071; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 338 - 398
Target Start/End: Complemental strand, 650 - 590
Alignment:
Q  338 gaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    ||||||||||||||||||||||||||||| | |||||| | |||||||| |||||||||||    
T  650 gaccaaccttaagagtggtccaccatagaccttattaaattttttaatttaaaccgtttga 590  T

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Target: scaffold0201 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 308 - 366
Target Start/End: Original strand, 21244 - 21302
Alignment:
Q  308 tgttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccataga 366  Q
    |||||| |||||||  ||||||||||||| |||||||||| ||||||||||||||||||    
T  21244 tgttaagtttaaccacaaatgtctatggtggaccaaccttcagagtggtccaccataga 21302  T

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Target: scaffold0121 (Bit Score: 38; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 227 - 292
Target Start/End: Original strand, 4450 - 4515
Alignment:
Q  227 ttttcattttggtcccataactcttaaaatcatcattttggtccctcaacttttgctccgttattc 292  Q
    |||| |||||| || ||||||||  ||||||| ||||||| |||||||||||||||||||||||||    
T  4450 tttttattttgctctcataactcgaaaaatcaacattttgctccctcaacttttgctccgttattc 4515  T

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Target: scaffold0128 (Bit Score: 33; Significance: 0.000000007; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 310 - 398
Target Start/End: Original strand, 22099 - 22187
Alignment:
Q  310 ttaactttaaccctaaatgtctatggtagaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 398  Q
    |||| |||||||| ||||| ||||||| ||||||| ||    ||||||||||||||| ||||||||||  ||||||| ||||| |||||    
T  22099 ttaagtttaacccaaaatgcctatggtggaccaacattgtaggtggtccaccatagaccctattaatttctttaatttaaaccatttga 22187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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