View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11821_low_20 (Length: 330)
Name: NF11821_low_20
Description: NF11821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11821_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 7 - 314
Target Start/End: Complemental strand, 29218205 - 29217898
Alignment:
| Q |
7 |
tgcattgcaggaagaactgaacttgattcggctgaacccgggtgaacttcattgccaacggcaatgtatttgattttgacgtttgagtatgcttttacat |
106 |
Q |
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| T |
29218205 |
tgcattgcaggaagaactgaacttgattcggctgaacccgggtgaacttcattgccaacggcaatgtatttgattttgacgattgagtatgcttttacat |
29218106 |
T |
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| Q |
107 |
atttgttgacccaatccgaggcagtttgagcatttgtgagtgatttgagaacgtcgtttgggacaccgaggatcacttctatgtttgaacctctaagggc |
206 |
Q |
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| T |
29218105 |
atttgttgacccaatccgaggcggtttgagcatttgtgagtgatttgagaacgttgtttgggacaccgaggatcacttctatgtttgaacttctaagggc |
29218006 |
T |
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| Q |
207 |
ttggagtatacctttgtctggattgtatatacggattttaccgattccttttgatttgtataaatcaaccactgcttgctttgttggtagattatttcca |
306 |
Q |
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| T |
29218005 |
ttggagtataccttcgtctggattgtatatacggattttaccgattccttttgatttgtataaatcaaccactgctttctttgttggtagattatttcca |
29217906 |
T |
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| Q |
307 |
tttcctcc |
314 |
Q |
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| T |
29217905 |
tttcctcc |
29217898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 169 - 302
Target Start/End: Complemental strand, 29250811 - 29250678
Alignment:
| Q |
169 |
acaccgaggatcacttctatgtttgaacctctaagggcttggagtatacctttgtctggattgtatatacggattttaccgattccttttgatttgtata |
268 |
Q |
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| T |
29250811 |
acaccaaggatcaattcaatgttagaacctctaagggcttgtaggacttcttgatctgggtagtatatacgcattttgccaatgccttttgatttatata |
29250712 |
T |
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| Q |
269 |
aatcaaccactgcttgctttgttggtagattatt |
302 |
Q |
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| T |
29250711 |
aatctacaacttcttgctttgatggtagattatt |
29250678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 29225355 - 29225318
Alignment:
| Q |
175 |
aggatcacttctatgtttgaacctctaagggcttggag |
212 |
Q |
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| T |
29225355 |
aggatcaattctatgttggaacctctaagggcttggag |
29225318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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