View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11821_low_21 (Length: 326)
Name: NF11821_low_21
Description: NF11821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11821_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 28585899 - 28585601
Alignment:
| Q |
1 |
catctttcataatttcttcatctccaagtcctccaaattcttcatagtttatggatctctaagtcatttttagcagaaatagttgcaactccattatctc |
100 |
Q |
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| T |
28585899 |
catctttcataatttcttcatctccaagtcctccaaattcttcatagtttgtgaatctccaagtcattttcagca---atagttgcaactccattatctc |
28585803 |
T |
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| Q |
101 |
ctttatttcgggttcctctctccaaatcttcaaaatcccaaatttagttttcaagtgaacatttatcattgttcacaatccactcatcatcggtttcaat |
200 |
Q |
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||||||||||||||||| |||||||||| |||||| ||||||||| |||| |||||||||||||||||| |||||||||||||||| |
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| T |
28585802 |
ttttatttcgggttcctccctccaaatctccaaaataccaaatttaattttgaagtgaacatttatcatt--------------catcatcggtttcaat |
28585717 |
T |
|
| Q |
201 |
gtcatcaaggctatattctaccgtatttctagctttcttcttctttgccaatttagaattagtcgtcactaacacaacatcattcatggttttttgcttc |
300 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28585716 |
gtcatcaaggctatattctaccatatttctagctttcttcttctttgccaatttagaattagtcgtcactaacacaacatcattcatggttttttgcttc |
28585617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 138 - 316
Target Start/End: Original strand, 26331960 - 26332138
Alignment:
| Q |
138 |
ccaaatttagttttcaagtgaacatttatcattgttcacaatccactcatcatcggtttcaatgtcatcaaggctatattctaccgtatttctagctttc |
237 |
Q |
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|||||||| ||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||| |||||||||||| | |||||||||||| |
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| T |
26331960 |
ccaaatttcattttcaagtgaacatccatcattgttcacaatccactcatcatcagaatcaatgtcatcaaatctatattctaccatctttctagctttc |
26332059 |
T |
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| Q |
238 |
ttcttctttgccaatttagaattagtcgtcactaacacaacatcattcatggttttttgcttcagcctatttattctct |
316 |
Q |
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|| |||||||||||||||||||||||| |||| |||||||||||||||||||| |||| | ||| |||||| |||||| |
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| T |
26332060 |
ttattctttgccaatttagaattagtcatcacaaacacaacatcattcatggtctttttttccagtctatttcttctct |
26332138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 316
Target Start/End: Original strand, 19493981 - 19494041
Alignment:
| Q |
256 |
gaattagtcgtcactaacacaacatcattcatggttttttgcttcagcctatttattctct |
316 |
Q |
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||||| ||| |||| ||||||||||||||||| ||||| ||||||||||||||| |||||| |
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| T |
19493981 |
gaattggtcatcacaaacacaacatcattcattgttttctgcttcagcctatttcttctct |
19494041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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