View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11821_low_28 (Length: 269)
Name: NF11821_low_28
Description: NF11821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11821_low_28 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 55300265 - 55300002
Alignment:
| Q |
1 |
catatgagtcaacctctttcttcatccatgatattgatgacaaccaccaatgaccactgttcttcctcctccgtgcggaacgtgacatattgtggcgagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55300265 |
catatgagtcaacctctttcttcatccatgatattgatgacaaccaccaatgaccactgttcttcctcctccgtgcggaacgtgacatattgtggcgagt |
55300166 |
T |
|
| Q |
101 |
aggcgatatcatgtgacgatctccaacagattgcttccgagtcgggctaggtactttcattctctctttctttctttctcttactctaccattcaaccaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55300165 |
aggcgatatcatgtgacgatctccaacagattgcttccgagtcgggctaggtactttcattctctctttctttctttctcttactctaccattcaaccaa |
55300066 |
T |
|
| Q |
201 |
taacatttcattactattatacttgtgccgtctctagtcggagcttccaagaaattcctatgct |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
55300065 |
taacatttcattactattatacttgtgccgtctctagttggagcttccaagaaattcctatgct |
55300002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University