View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11821_low_29 (Length: 268)
Name: NF11821_low_29
Description: NF11821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11821_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 36893372 - 36893623
Alignment:
| Q |
1 |
tttcttcacttattggtctctgcttctccgtaaccggactcatcatgtttctttctattctcacttctagaaaacaagccaaagattttcgtcgcgattt |
100 |
Q |
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| T |
36893372 |
tttcttcacttatcggtctctgcttctccgtaaccggactcatcatgtttctttctattctcacttctagaaaacaagccaaagattttcgtcgcgattt |
36893471 |
T |
|
| Q |
101 |
gccattgaaacttcttcttgggttaagttctctttttgtgtccattgcttcaatgtttgtttcattctgcactggacannnnnnnctgcttagccataat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
36893472 |
gccattgaaacttcttcttgggttaagttctctttttgtgtccattgcttcaatgtttgtttcattctgcactggacatttttttctgcttagccataat |
36893571 |
T |
|
| Q |
201 |
tttaagtcggttttgttcccaatttacgcagcaacttgtttgcctgtgactt |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36893572 |
tttaagtcggttttgttcccaatttacgcagcaacttgtttgcctgtgactt |
36893623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 36883369 - 36883620
Alignment:
| Q |
1 |
tttcttcacttattggtctctgcttctccgtaaccggactcatcatgtttctttctattctcacttctagaaaacaagccaaagattttcgtcgcgattt |
100 |
Q |
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||||||||||||| ||||| |||||||| || ||||||||||||||||| ||||| |||||||||||| | ||||||||||||||||||||||| ||||| |
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| T |
36883369 |
tttcttcacttatcggtctttgcttctctgttaccggactcatcatgttcctttcaattctcacttctcgtaaacaagccaaagattttcgtcgagattt |
36883468 |
T |
|
| Q |
101 |
gccattgaaacttcttcttgggttaagttctctttttgtgtccattgcttcaatgtttgtttcattctgcactggacannnnnnnctgcttagccataat |
200 |
Q |
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| T |
36883469 |
gccactgaaacttcttcttgggctaagttctctctttgtgtccattgcttcaatgtttatttcattctgcactggacatttttttctgcttagccataat |
36883568 |
T |
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| Q |
201 |
tttaagtcggttttgttcccaatttacgcagcaacttgtttgcctgtgactt |
252 |
Q |
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||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
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| T |
36883569 |
tttaagtcgattttgttcccaatttatgcagcaacttgtttgcctgtgactt |
36883620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 33 - 248
Target Start/End: Original strand, 36903206 - 36903421
Alignment:
| Q |
33 |
accggactcatcatgtttctttctattctcacttctagaaaacaagccaaagattttcgtcgcgatttgccattgaaacttcttcttgggttaagttctc |
132 |
Q |
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|||| |||||||||||| |||| | ||||||| ||| ||||| ||| ||||||||||| | ||||||||| |||||||| | | ||| ||| ||| | |
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| T |
36903206 |
accgcactcatcatgttcctttttgttctcacatctcaaaaacgagcaaaagattttcgcagggatttgccactgaaactttatatcgggctaatttcac |
36903305 |
T |
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| Q |
133 |
tttttgtgtccattgcttcaatgtttgtttcattctgcactggacannnnnnnctgcttagccataattttaagtcggttttgttcccaatttacgcagc |
232 |
Q |
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|||||||||| |||||||| ||| ||||||| ||||||||||| | ||||||||||| || ||||||| | |||||||| |||||| ||||| |
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| T |
36903306 |
tttttgtgtcgattgcttctatgattgtttcgttctgcactggctacttttttctgcttagccacaaatttaagttgattttgttctcaatttctgcagc |
36903405 |
T |
|
| Q |
233 |
aacttgtttgcctgtg |
248 |
Q |
| |
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| |||||||||||||| |
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| T |
36903406 |
agcttgtttgcctgtg |
36903421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 133
Target Start/End: Complemental strand, 20079220 - 20079129
Alignment:
| Q |
42 |
atcatgtttctttctattctcacttctagaaaacaagccaaagattttcgtcgcgatttgccattgaaacttcttcttgggttaagttctct |
133 |
Q |
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|||||||| |||||||| ||||||||| ||||||||| | |||| || | | | |||||||||||||||||| |||||||||||||||| |
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| T |
20079220 |
atcatgttcctttctatactcacttctcgaaaacaagtcgaagacttcaatagaaacttgccattgaaacttctttttgggttaagttctct |
20079129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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