View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11821_low_3 (Length: 852)
Name: NF11821_low_3
Description: NF11821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11821_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 684; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 684; E-Value: 0
Query Start/End: Original strand, 25 - 831
Target Start/End: Complemental strand, 39021976 - 39021153
Alignment:
| Q |
25 |
tacagagacagagaagaatgggaagttcgtttcgacatctaccaatcaaatgttcagtatatagagttctacaactctcaaaactattcttacaagctca |
124 |
Q |
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| T |
39021976 |
tacagagacagagaagaatgggaagttcgtttcgacatctaccaatcaaatgttcagtatatagagttctacaactctcaaaactattcttacaagctca |
39021877 |
T |
|
| Q |
125 |
tagacaacaggtttgcagatcttactaatgaagagttcaaaagcacctatctaggttttctgcctcggtttcgtgtacaaacggaattcaggtatcataa |
224 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
39021876 |
tagacaacaggtttgcagatattactaatgaagagttcaaaagcacctatctaggttatctgccccggtttcgtgtacaaacggaattcaggtatcataa |
39021777 |
T |
|
| Q |
225 |
acatggagaactaccgaaaatcatagattggagaaagaaaggtgcagttacacaagtcaaagatcaaggccgttgtggtaatttattgcaaatcaagttt |
324 |
Q |
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| T |
39021776 |
acatggagaactaccgaaaagcatagattggagaaagaaaggtgcagttacacacgtcaaagatcaaggccgttgtggtaatttattgcaaatcaagttt |
39021677 |
T |
|
| Q |
325 |
ctcannnnnnnnnc-cctcaaaaagtttattcattttctcaaatattacagtttagttactagtatgctatgatataatatacacacatctagtagttcc |
423 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39021676 |
ctctttttttttttgcctcaaaaagtttattcattttctcaaatattacagtttagttactagtatgctatgatataatatacacacatctagtagttcc |
39021577 |
T |
|
| Q |
424 |
atgcacaactaaacgataagtctatacgaactttat----------------atgaacatgacaggataaattagtctcatagttatatctatgaagaat |
507 |
Q |
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| T |
39021576 |
atgcacaactaaacgataagtctatacgaactttatctgaagtgtttgtgatatgaacatgacaggataaattagtcttatagttatatctataaagaat |
39021477 |
T |
|
| Q |
508 |
atagttatatctataaagaaaatagttacttaccttaaggaattactacctaacaagtaaatgtatttgaagtcttctgaagtttatctattgctaagta |
607 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39021476 |
atagttatatctataaagaaaatagttacttaccttgaggaattactacctaacaagtaaatgtatttgaagtcttctgaagtttatctattgctaagta |
39021377 |
T |
|
| Q |
608 |
gcgagctaaagagcacacttaaacatttttgaaatttatgttttgggctgatatgatggtgtcaaacttgatgcaggaagttgttgggcattctcagcag |
707 |
Q |
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| T |
39021376 |
gcgagctaaagagcacgcttaaacatttttgaaatttatgttttgtgctgatatgatggtgtcaaacttgatgcaggaagttgttgggcattctcagcag |
39021277 |
T |
|
| Q |
708 |
tggcagctgtagaaggcatcaacaagatcaaaacagaaaatttagtttctctatcggaacaacagttgatagattgtgatattgaaagtgggaatgaagg |
807 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
39021276 |
tggcagctgtagaaggcatcaacaagatcaaaacagaaaatttagtttctctatcggaacaacagttgatagattgtgatattaaaagtgggaatgaagg |
39021177 |
T |
|
| Q |
808 |
ctgcgaaggtggcgacatgtacat |
831 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
39021176 |
ctgcgaaggtggcgacatgtacat |
39021153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 682 - 798
Target Start/End: Complemental strand, 30713213 - 30713097
Alignment:
| Q |
682 |
aggaagttgttgggcattctcagcagtggcagctgtagaaggcatcaacaagatcaaaacagaaaatttagtttctctatcggaacaacagttgatagat |
781 |
Q |
| |
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|||| |||||||||||||| | ||||||||||||||||||||||||||||| || ||| ||| || || | ||||| || |||||| | |||||||| |
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| T |
30713213 |
aggaggttgttgggcattcgctgcagtggcagctgtagaaggcatcaacaaaataaaatcagggaaattgatctctctgtctgaacaagaactgatagat |
30713114 |
T |
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| Q |
782 |
tgtgatattgaaagtgg |
798 |
Q |
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|||||| || ||||||| |
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| T |
30713113 |
tgtgatgttaaaagtgg |
30713097 |
T |
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Back To:
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