View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11821_low_31 (Length: 243)
Name: NF11821_low_31
Description: NF11821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11821_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 8 - 233
Target Start/End: Original strand, 27608293 - 27608516
Alignment:
| Q |
8 |
aggagcacagacatctgcaatgttaccatctgannnnnnngaagaattacatgtattaattcaaccggcaaagggaaaatccaatgaaaattggtttttc |
107 |
Q |
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| T |
27608293 |
aggaacacagacatctgcaatgttaccatctgatttttttgaagaattacatgtattaattcaaccggcaaagggaaaatccaatgaaaattggtttttc |
27608392 |
T |
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| Q |
108 |
ctagaaggatgtaac---cagcatagtttccttttgcatnnnnnnnnctacaatagaatagtttaaagcatcaatataattaacactagataacacggaa |
204 |
Q |
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| T |
27608393 |
ctagaaggatgtaaccagcagcatagtttccttttgcataaataaaactacaatagaatagtttaaagcatc-----aattaacactagataacaaggaa |
27608487 |
T |
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| Q |
205 |
atgttctcaccgttgagctgatgtccatc |
233 |
Q |
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|||||||||||||||||||||||| |||| |
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| T |
27608488 |
atgttctcaccgttgagctgatgtgcatc |
27608516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 8 - 233
Target Start/End: Original strand, 34496749 - 34496968
Alignment:
| Q |
8 |
aggagcacagacatctgcaatgttaccatctgannnnnnngaagaattacatgtattaattcaaccggcaaagggaaaatccaatgaaaattggtttttc |
107 |
Q |
| |
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|||| |||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
34496749 |
aggaacacagacatctgcaatgttaccattggatttttttgaagaattacatgtattaattcaaccagcaaagggaaaatccaatgaaaattagtttttc |
34496848 |
T |
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| Q |
108 |
ctagaaggatgtaaccagcatagtttccttttgcatnnnnnnnnctacaatagaatagtttaaagcatcaatataattaacactagataacacggaaatg |
207 |
Q |
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| T |
34496849 |
ctagaaggatgtaaccaacatagtttccttttgcat-aaaaaaactacaatagaatagtttaaagcatc-----aattaacactagataacaaggaaatg |
34496942 |
T |
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| Q |
208 |
ttctcaccgttgagctgatgtccatc |
233 |
Q |
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| T |
34496943 |
ttctcaccgttgagctgatgtgcatc |
34496968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 8 - 233
Target Start/End: Complemental strand, 31505957 - 31505741
Alignment:
| Q |
8 |
aggagcacagacatctgcaatgttaccatctgannnnnnngaagaattacatgtattaattcaaccggcaaagggaaaatccaatgaaaattggtttttc |
107 |
Q |
| |
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|||| |||||||||||||||||||||||||||| |||||| || ||||| |||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
31505957 |
aggaacacagacatctgcaatgttaccatctgattttacc-aagaatcacgtgtatcaattcaaccgacaaagggaaaatcaaatgaaaattggttttt- |
31505860 |
T |
|
| Q |
108 |
ctagaaggatgtaaccagcatagtttccttttgcatnnnnnnnnctacaatagaatagtttaaagcatcaatataattaacactagataacacggaaatg |
207 |
Q |
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||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||| ||||| ||||||| |
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| T |
31505859 |
ctagaaggatgtaaccagcatagttgccttttgcat--aacagactacaatagaatagtttaaagcatc-----aattaacactaggtaacaaggaaatg |
31505767 |
T |
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| Q |
208 |
ttctcaccgttgagctgatgtccatc |
233 |
Q |
| |
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||||||||||||||||||||| |||| |
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| T |
31505766 |
ttctcaccgttgagctgatgtgcatc |
31505741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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