View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11821_low_35 (Length: 240)
Name: NF11821_low_35
Description: NF11821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11821_low_35 |
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Alignment Details
Target: chr6 (Bit Score: 149; Significance: 8e-79; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 21 - 214
Target Start/End: Original strand, 32672440 - 32672635
Alignment:
| Q |
21 |
aatatatttttgtgaattttcaattgcataggctttcaacacaagtcagaacaacatgttgatacttgaataaagcagtgtggttcaattgtagtttatt |
120 |
Q |
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| T |
32672440 |
aatatatttttgtgaattttcaattgcataggctttcaacacaagtcagaacaacatgttgatacttgaagaaagcagtgtggttcaattgtagtttact |
32672539 |
T |
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| Q |
121 |
gtccaattgagcggtgaagatacttcccacattcaatt--ccccctcatttttcacaattacttctgatggaaaccaacttgataacaataataat |
214 |
Q |
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| T |
32672540 |
gtccaattgagcggtgaagatacttcccacattccagtaataccctcaggtttcacaattacttctgattgaaaccaacttgataacaataataat |
32672635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 133 - 223
Target Start/End: Original strand, 32708451 - 32708536
Alignment:
| Q |
133 |
ggtgaagatacttcccacattcaattccccctcatttttcacaattacttctgatggaaaccaacttgataacaataataatggacttatt |
223 |
Q |
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| T |
32708451 |
ggtgaagatacttcccacattc-----cccctcatttttcacaattacttctgatggaaaccaacttgataacaataataatggacttatt |
32708536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 10 - 103
Target Start/End: Original strand, 28601367 - 28601460
Alignment:
| Q |
10 |
atttcgtttctaatatatttttgtgaattttcaattgcataggctttcaacacaagtcagaacaacatgttgatacttgaataaagcagtgtgg |
103 |
Q |
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| T |
28601367 |
atttcgtttctaatgtatttttgtgaattttcaaatgtataggctttcaacacaagtcaaaacaacatgttgatacttcaagaaagctgtgtgg |
28601460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 210
Target Start/End: Original strand, 28601521 - 28601605
Alignment:
| Q |
128 |
tgagcggtgaagatacttcccacattcaatt--ccccctcatttttcacaattacttctgatggaaaccaacttgataacaataa |
210 |
Q |
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| T |
28601521 |
tgagtggtgaagatacttcccacattccagtaacaccctcaggtttcacaatcacttctgatggaaacacacttgataacaataa |
28601605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 32708340 - 32708385
Alignment:
| Q |
58 |
aacacaagtcagaacaacatgttgatacttgaataaagcagtgtgg |
103 |
Q |
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| T |
32708340 |
aacactagtcagaacaacatgttgatacttcaagaaagctgtgtgg |
32708385 |
T |
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