View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11821_low_4 (Length: 721)

Name: NF11821_low_4
Description: NF11821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11821_low_4
NF11821_low_4
[»] chr3 (1 HSPs)
chr3 (58-703)||(35446120-35446765)


Alignment Details
Target: chr3 (Bit Score: 630; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 630; E-Value: 0
Query Start/End: Original strand, 58 - 703
Target Start/End: Complemental strand, 35446765 - 35446120
Alignment:
Q  58 ttttaactttaaaattgaacaaaatagggaaggataaaaatgttgcataccaggccaaggtcgtttaaggctatgttaatggttgcaatgtcgccgccgg 157  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  35446765 ttttaactttaaaattgaacaaaatagggaaggataaaaatgttgcataccaggccaaggtcatttaaggctatgttaatggttgcaatgtcgccaccgg 35446666  T
Q  158 aagtagtatgctcagacaaaggaagattttccagttggtctaagtacacaacattttgctttccaaagttttttaccagttcagccaaataagttaaatg 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35446665 aagtagtatgctcagacaaaggaagattttccagttggtctaagtacacaacattttgctttccaaagttttttaccagttcagccaaataagttaaatg 35446566  T
Q  258 ttgtcgcaggcttttaaagggtacttcctcggtttcttcttcagagcttatctgagcacagaaatacatgacctgcagaattgcatcagggtttttcatg 357  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  35446565 ttgtcgcaggcttttaaagggtacttcctcggtttcttcttcagagcttatctgagcacagaaatacatgacctgcagaatagcatcagggtttttcatg 35446466  T
Q  358 acaatttgctttccttcatttccacttgtagtgcagaaaatgtaagttccaaagggtctataaggactcaaaggaacaaaatttgcaatagtttcaagtg 457  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35446465 acaatttgctttccttcatttccacttgtagtgcagaaaatgtaagttccaaagggtctataaggactcaaaggaacaaaatttgcaatagtttcaagtg 35446366  T
Q  458 ttgcttctgttgttcccattagcctacaagcagcatgtcgtgtgacagttgtagcatttgacattactccaaagtagaaatccgaagttgaagcgattct 557  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  35446365 ttgcttctgttgttcccattagcctacaagcagcatgtcgtgtgacagttgtagcatttgacattacttcaaagtagaaatccgaagttgaagcgattct 35446266  T
Q  558 tccaagactcgattcattcatgaatgatttgcttttgggatctaagagctgtgcaactgtttcaaatttttggtcgaaagaagatagaggggcaaggagg 657  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35446265 tccaagactcgattcattcatgaatgatttgcttttgggatctaagagctgtgcaactgtttcaaatttttggtcgaaagaagatagaggggcaaggagg 35446166  T
Q  658 attcttggcactatgtcatatctcatcacaaaatggaagaagtggt 703  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  35446165 attcttggcactatgtcatatctcatcacaaaatggaagaagtggt 35446120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University