View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11821_low_5 (Length: 631)
Name: NF11821_low_5
Description: NF11821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11821_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 511; Significance: 0; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 1 - 598
Target Start/End: Complemental strand, 7177459 - 7176861
Alignment:
| Q |
1 |
atgcctgaggactgcaccaagcatggttgtaaaccctaacaccaaatacatgcataaattatattttggatatattcgaaaattcatctaacagttgatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
7177459 |
atgcctgaggactgcaccaagcatggttgtaaaccctaacaccaaatacatgcataaattatattttggatatattcgaaaattcaactaacagttgatt |
7177360 |
T |
|
| Q |
101 |
ttaatgacnnnnnnntgaaatggttttattttacgtgtttaatataatttacaatgaaaacataagaaaaattaaaaattttagccttcaaatttgtcta |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7177359 |
ttaatgacaaaaaaatgaaatggttttattttacgtgtttcatataatttacaatgaaaacataagaaaaattaaaaattttagccttcaaatttgtcta |
7177260 |
T |
|
| Q |
201 |
tatcctttaacttcttccttacagtaacaaattgttgtactatgaaattaatttgaagtaaattaaagatatgagaatatatacctctacagtggtatca |
300 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7177259 |
tatcctttaacttcttccttacagtaaaaaattgttgtgctatgaaattaatttgaagtaaattaaagatatgagaatatatacctctacagtggtatca |
7177160 |
T |
|
| Q |
301 |
tctccattttctttgatcttatccatgcactccgctctaaaacttattagcttcctctgtgacatgaaacaagagagatgtataacattagctatagaat |
400 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7177159 |
tctccattttctttgatcttatccttgcacttcgctctaaaacttattagcttcctctgtgacatgaaacaagagagatgtataacattagctatagaat |
7177060 |
T |
|
| Q |
401 |
agttaattaataatgaatgaaaaattattgattaatacttactttgattttctctttaagcaacagacctagtgctttgccatgga---catcttgtttg |
497 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
7177059 |
agttaattaacaatgaatgaaaaattattgattaatacttactttgattttgtctttaagtaacagacctaatgctttgccatggacatcatcttgtttg |
7176960 |
T |
|
| Q |
498 |
ttattcatcgtacacctttctgtgattaatctgatagttctctaaacaaaagaatgactatcccttatacttatatggtttgggctaggagcattttcct |
597 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7176959 |
ttattcatcgt--acctttctgtgattaatctgatagttctctaaacaaaagaatgactatcccttatacttatatggtttgggctaggagcattttcct |
7176862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 5 - 399
Target Start/End: Original strand, 46493958 - 46494353
Alignment:
| Q |
5 |
ctgaggactgcaccaagcatggttgtaaaccctaacaccaaatacatgcataaattatattttggatatattcgaaaattcatctaacagttgatgttaa |
104 |
Q |
| |
|
||||||| |||| | |||||| ||||||| | || |||| ||||||||||||| ||||||||||||||||||||||| |||| |||||| ||||| ||| |
|
|
| T |
46493958 |
ctgaggattgcatcgagcatgcttgtaaatcatagcacccaatacatgcataatttatattttggatatattcgaaatttcaactaacaattgattttag |
46494057 |
T |
|
| Q |
105 |
tgacnnnnnnntgaaatggttttattttacgtgtttaatataatttacaatgaaaacataagaaaaattaaaaattttagccttcaaattt-gtctatat |
203 |
Q |
| |
|
|||| |||||||||||| ||||| | |||||| ||||||||||||||||||||||||||||| | ||||||||| ||| ||| |||||||| |
|
|
| T |
46494058 |
tgacaaaaaaatgaaatggttttcttttatgcgtttaaaataatttacaatgaaaacataagaaaaataactttttttagcctccaacttttgtctatat |
46494157 |
T |
|
| Q |
204 |
cctttaacttcttccttacagtaacaaattgttgtactatgaaattaatttgaagtaaattaaagatatgagaatatatacctctacagtggtatcatct |
303 |
Q |
| |
|
||| ||||||||||||||| || ||| || ||| ||||||||||||||| | ||||||||| ||||||||||||| ||||||| ||| |||||||||| |
|
|
| T |
46494158 |
gcttcaacttcttccttacaacaaaaaactgatgtgctatgaaattaattttatgtaaattaaggatatgagaatatgtacctctgcaggggtatcatct |
46494257 |
T |
|
| Q |
304 |
ccattttctttgatcttatccatgcactccgctctaaaacttattagcttcctctgtgacatgaaacaagagagatgtataacattagctatagaa |
399 |
Q |
| |
|
|||||||| |||| ||||||| |||||| |||||||| |||| ||| | ||||| |||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
46494258 |
ccattttccttgaccttatccttgcacttcgctctaatactttttaacatcctcggtgacatgaaacaagatagatgtataacatcagctatagaa |
46494353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 8 - 379
Target Start/End: Complemental strand, 46491418 - 46491045
Alignment:
| Q |
8 |
aggactgcaccaagcatggttgtaaaccctaacaccaaatacatgcataaattatattttggatatattcgaaaattcatctaacagttgatgttaatga |
107 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||| |||||| ||||| ||| ||| |
|
|
| T |
46491418 |
aggactgcaccgagcatgcttgtaaaccctaacacccaatacatgcataatttatattttggatatattcgaaatttcaactaacaattgattttagtga |
46491319 |
T |
|
| Q |
108 |
cnnnnnnntgaaatggttttattttacgtgtttaatataatttacaatgaaaacataagaaaaattaaaaatttta-gccttcaaattt-gtctatatcc |
205 |
Q |
| |
|
| ||||||| |||| ||||| | |||||| |||||| ||||||||| |||||||||||| | | |||| |||| ||| ||| |||||||| | |
|
|
| T |
46491318 |
caacaaaatgaaatgattttcttttatgcgtttaaaataattaacaatgaaagcataagaaaaataacatttttttcgcctccaacttttgtctatatgc |
46491219 |
T |
|
| Q |
206 |
tttaacttcttccttacagtaacaaattgttgtactatgaaattaatttgaagtaaattaaagatatgagaatatatacctctacagtggtatcatctcc |
305 |
Q |
| |
|
|| ||||||||||||||| || ||| || ||| ||||||||||||||| ||||||||||||||||||||||||| || |||||||| |||||| ||| | |
|
|
| T |
46491218 |
ttcaacttcttccttacaacaaaaaactgatgtgctatgaaattaattttaagtaaattaaagatatgagaatatgtatctctacaggggtatcttcttc |
46491119 |
T |
|
| Q |
306 |
attttctttgatcttatccatgcactccgctctaaaacttattagcttcctctgtgacatgaaacaagagagat |
379 |
Q |
| |
|
|||||| |||| ||||||| | |||| ||||| ||||||| ||| | ||||||||||||| ||||||| |||| |
|
|
| T |
46491118 |
attttccttgaccttatccttacacttcgctccaaaactttttaacatcctctgtgacatataacaagatagat |
46491045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 46493450 - 46493139
Alignment:
| Q |
1 |
atgcctgaggactgcaccaagcatggttgtaaaccctaacaccaaatacatgcataaattatattttggatatattcgaaaattcatctaacagttgatg |
100 |
Q |
| |
|
|||| ||||||||||||| |||||| ||||||||||||||||| ||||||||||||| |||||||||| | |||||||||| |||| |||||| ||||| |
|
|
| T |
46493450 |
atgcttgaggactgcaccgagcatgcttgtaaaccctaacacccaatacatgcataatttatattttgaaaatattcgaaatttcaactaacaattgatt |
46493351 |
T |
|
| Q |
101 |
ttaatgacnnnnnnntgaaatggttttattttacgtgtttaatataatttacaatgaaaacataagaaaaattaaaaattttagccttcaa-atttgtct |
199 |
Q |
| |
|
||| |||| |||||||| ||| ||||| |||||| | ||||||||||||||||||||||||||||| | | |||||||| ||| ||||||| |
|
|
| T |
46493350 |
ttagtgacaaaaaaatgaaatggatttcttttatgtgtttcaaataatttacaatgaaaacataagaaaaataacattctttagcctccaacgtttgtct |
46493251 |
T |
|
| Q |
200 |
atatcctttaacttcttccttacagtaacaaattgttgtactatgaaattaatttgaagtaaattaaagatatgagaatatatacctctacagtggtatc |
299 |
Q |
| |
|
|||| ||| ||||||||||||||| || ||| | ||| ||||||||||||||| ||||||||||| ||||||||||||| || ||||| | |||||| |
|
|
| T |
46493250 |
atatgcttcaacttcttccttacaacaaaaaactaatgtgctatgaaattaattttaagtaaattaaggatatgagaatatgtagctctataagggtatc |
46493151 |
T |
|
| Q |
300 |
atctccattttc |
311 |
Q |
| |
|
|||||||||||| |
|
|
| T |
46493150 |
atctccattttc |
46493139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 8 - 172
Target Start/End: Original strand, 46492091 - 46492255
Alignment:
| Q |
8 |
aggactgcaccaagcatggttgtaaaccctaacaccaaatacatgcataaattatattttggatatattcgaaaattcatctaacagttgatgttaatga |
107 |
Q |
| |
|
||||||||| | |||||| ||||||||||||||| | ||||||||||||| |||||||||||||||| |||||| |||| |||||| || || ||| ||| |
|
|
| T |
46492091 |
aggactgcatcgagcatgcttgtaaaccctaacagccaatacatgcataatttatattttggatatagtcgaaatttcaactaacaatttattttagtga |
46492190 |
T |
|
| Q |
108 |
cnnnnnnntgaaatggttttattttacgtgtttaatataatttacaatgaaaacataagaaaaat |
172 |
Q |
| |
|
| ||||||||||| ||||| | ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
46492191 |
caaaaaaatgaaatggtttccttttatgcatttaaaataatttacaatgaaaacataagaaaaat |
46492255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 193 - 345
Target Start/End: Complemental strand, 7167189 - 7167038
Alignment:
| Q |
193 |
tttgtctatatcctttaacttcttccttacagtaacaaattgttgtactatgaaattaatttgaagtaaattaaagatatgagaatatatacctctacag |
292 |
Q |
| |
|
||||||||||| ||| ||||| ||||||||| || ||| || ||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
7167189 |
tttgtctatatgcttcaactt-ttccttacaacaaaaaactgatgtgctatgaaattaattttaagtaaattaaagatatgagaatatgtacctctacag |
7167091 |
T |
|
| Q |
293 |
tggtatcatctccattttctttgatcttatccatgcactccgctctaaaactt |
345 |
Q |
| |
|
||||| ||||||| ||| |||| | ||||| ||||| ||||||||||||| |
|
|
| T |
7167090 |
gagtatcttctccatcttccttgaccatatccttgcacctcgctctaaaactt |
7167038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 394 - 492
Target Start/End: Complemental strand, 7166967 - 7166870
Alignment:
| Q |
394 |
atagaatagttaattaataatgaatgaaaaattattgattaatacttactttgattttctctttaagcaacagacctagtgctttgccatggacatctt |
492 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||| || |||||||||||||||| | ||||| ||||| |||||||| |
|
|
| T |
7166967 |
atagaatagttaattaataatgaatgaaaaat-attgattaatacttacattgatgttgtctttaagcaacagactcaatgcttcgccatagacatctt |
7166870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 394 - 468
Target Start/End: Complemental strand, 46493043 - 46492969
Alignment:
| Q |
394 |
atagaatagttaattaataatgaatgaaaaattattgattaatacttactttgattttctctttaagcaacagac |
468 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||| ||||||| |||| |
|
|
| T |
46493043 |
atagaatagttaattaataatgaatgaaaaaatattgattaatacttactttgatgttgtctctaagcaagagac |
46492969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 393 - 489
Target Start/End: Original strand, 46494574 - 46494669
Alignment:
| Q |
393 |
tatagaatagttaattaataatgaatgaaaaattattgattaatacttactttgattttctctttaagcaacagacctagtgctttgccatggacat |
489 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||||||||||||||||| || ||| | | ||| ||||| ||||||||| ||| ||||| |
|
|
| T |
46494574 |
tatagaatagttaattaataatgaataaaaaat-attgattaatacttactttgatgttgtctctgaacaagagacccagtgctttgtcatagacat |
46494669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 394 - 468
Target Start/End: Original strand, 46492502 - 46492576
Alignment:
| Q |
394 |
atagaatagttaattaataatgaatgaaaaattattgattaatacttactttgattttctctttaagcaacagac |
468 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||||||||||||||| || ||| ||||||| |||| |
|
|
| T |
46492502 |
atagaataattaattaataatgaatgaaaaaatattgattaatacttactttgacgttgtctctaagcaagagac |
46492576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 394 - 463
Target Start/End: Complemental strand, 46491003 - 46490935
Alignment:
| Q |
394 |
atagaatagttaattaataatgaatgaaaaattattgattaatacttactttgattttctctttaagcaa |
463 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| |||||||||| || ||| ||||||| |
|
|
| T |
46491003 |
atagaatagttaattaataatgaatgaaaaa-tattgattaataattactttgatgttgtctctaagcaa |
46490935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 57
Target Start/End: Complemental strand, 7167373 - 7167322
Alignment:
| Q |
6 |
tgaggactgcaccaagcatggttgtaaaccctaacaccaaatacatgcataa |
57 |
Q |
| |
|
||||||||||||| | |||| |||||||||||| |||| ||||||||||||| |
|
|
| T |
7167373 |
tgaggactgcaccgaacatgcttgtaaaccctagcacccaatacatgcataa |
7167322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 7e-20; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 418 - 492
Target Start/End: Original strand, 12496320 - 12496394
Alignment:
| Q |
418 |
tgaaaaattattgattaatacttactttgattttctctttaagcaacagacctagtgctttgccatggacatctt |
492 |
Q |
| |
|
|||||||||||||||||||||| || ||||| || ||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
12496320 |
tgaaaaattattgattaatactaacgttgatgttgtctttaagcaacagacccagtcctttgccatggacatctt |
12496394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 418 - 492
Target Start/End: Original strand, 12520185 - 12520259
Alignment:
| Q |
418 |
tgaaaaattattgattaatacttactttgattttctctttaagcaacagacctagtgctttgccatggacatctt |
492 |
Q |
| |
|
|||||||||||||||||||||| || ||||| || ||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
12520185 |
tgaaaaattattgattaatactaacgttgatgttgtctttaagcaacagacccagtcctttgccatggacatctt |
12520259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 418 - 492
Target Start/End: Original strand, 12580474 - 12580548
Alignment:
| Q |
418 |
tgaaaaattattgattaatacttactttgattttctctttaagcaacagacctagtgctttgccatggacatctt |
492 |
Q |
| |
|
|||||||||||||||||||||| || ||||| || ||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
12580474 |
tgaaaaattattgattaatactaacgttgatgttgtctttaagcaacagacccagtcctttgccatggacatctt |
12580548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 333 - 386
Target Start/End: Original strand, 48241148 - 48241201
Alignment:
| Q |
333 |
cgctctaaaacttattagcttcctctgtgacatgaaacaagagagatgtataac |
386 |
Q |
| |
|
||||||||||||| ||| | |||||||||||||| ||||||| ||||||||||| |
|
|
| T |
48241148 |
cgctctaaaactttttaacatcctctgtgacatgtaacaagatagatgtataac |
48241201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 422 - 492
Target Start/End: Complemental strand, 12581113 - 12581043
Alignment:
| Q |
422 |
aaattattgattaatacttactttgattttctctttaagcaacagacctagtgctttgccatggacatctt |
492 |
Q |
| |
|
|||||||||||| ||||| || ||||| || ||| ||| ||||||||| | | |||||||||||||||||| |
|
|
| T |
12581113 |
aaattattgattgatactaacattgatgttgtctctaaccaacagacccaattctttgccatggacatctt |
12581043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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