View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11821_low_8 (Length: 528)
Name: NF11821_low_8
Description: NF11821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11821_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 18 - 513
Target Start/End: Original strand, 38052017 - 38052512
Alignment:
| Q |
18 |
gaaaaagatgtcaagagcacaagattcaattctcaaatacatgatgaagattatgacaatatgcaaagctcaaggttttgtctatggtattgttccagag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38052017 |
gaaaaagatgtcaagagcacaagattcaattctcaaatacatgatgaagattatgacaatatgcaaagctcaaggttttgtctatggtattgttccagag |
38052116 |
T |
|
| Q |
118 |
aaaggaaaaccagtaacaggttcttcagaaagcttgcgtgaatggtggaaagaacaagttaaattcagtcaaaatgcaccagctgcagtttccaaatact |
217 |
Q |
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| T |
38052117 |
aaaggaaaaccagtaacaggttcttcagaaagcttgcgtgaatggtggaaagaacaagttaaattcagtcaaaatgcaccagctgcagtttccaaatact |
38052216 |
T |
|
| Q |
218 |
taccatcatcactcttagaaaatcaacaagagttagaattattagatcccatttcatcatatatgcatttactttatgacttgcaagatactactttagg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38052217 |
taccatcatcactcttagaaaatcaacaagagttagaattattagatcccatttcatcatatatgcatttactttatgacttgcaagatactactttagg |
38052316 |
T |
|
| Q |
318 |
ttctcttctttcagctctaatgcaacactgtgtgccaccacaaagaagattccctcttgaaataggtttggctcctccatggtggcctaatggaacagaa |
417 |
Q |
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| T |
38052317 |
ttctcttctttcagctctaatgcaacactgtgtaccaccacaaagaagattccctcttgaaataggtttggctcctccatggtggcctaatggaacagaa |
38052416 |
T |
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| Q |
418 |
cagtggtggggtcaacaaggtggtttgtcagaacaacatggcccaccaccttataaaaaacctcatgatttgaaaaaggcttggaaagtttctgtg |
513 |
Q |
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| T |
38052417 |
cagtggtggggtcaacaaggtggtttgtcagaacaacatggcccaccaccttataaaaaacctcatgatttgaaaaaggcttggaaagtttctgtg |
38052512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 170
Target Start/End: Original strand, 39679474 - 39679626
Alignment:
| Q |
18 |
gaaaaagatgtcaagagcacaagattcaattctcaaatacatgatgaagattatgacaatatgcaaagctcaaggttttgtctatggtattgttccagag |
117 |
Q |
| |
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|||||||||||||||||||||||||||| | |||||||||||| ||||| ||| |||||||||| |||||||||||||||| || | || || |
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| T |
39679474 |
gaaaaagatgtcaagagcacaagattcagtactcaaatacatggcaaagatcatggatgtatgcaaagccaaaggttttgtctatggaatcatccctgaa |
39679573 |
T |
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| Q |
118 |
aaaggaaaaccagtaacaggttcttcagaaagcttgcgtgaatggtggaaaga |
170 |
Q |
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| T |
39679574 |
aagggtaaaccggtatcaggttcgtctgatagtttacgcgaatggtggaaaga |
39679626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 316 - 512
Target Start/End: Original strand, 39679769 - 39679965
Alignment:
| Q |
316 |
ggttctcttctttcagctctaatgcaacactgtgtgccaccacaaagaagattccctcttgaaataggtttggctcctccatggtggcctaatggaacag |
415 |
Q |
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||||| |||||||| ||| |||||||||| |||||||||||||| || || || || || || | || | ||||||| |||||||| | ||| ||| |
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| T |
39679769 |
ggttcgcttctttctgctttaatgcaacattgtgtgccaccacagaggaggtttccactcgagaggggaatttctcctccctggtggcccacaggatcag |
39679868 |
T |
|
| Q |
416 |
aacagtggtggggtcaacaaggtggtttgtcagaacaacatggcccaccaccttataaaaaacctcatgatttgaaaaaggcttggaaagtttctgt |
512 |
Q |
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|| | ||||||||| |||||||| ||| | || |||| ||||||||||||||||| ||||| ||||| | |||||||| |||||||||||||| |
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| T |
39679869 |
aaaattggtggggtgaacaaggtttgttggcccaagaacaaggcccaccaccttataagaaaccacatgaccttaaaaaggcatggaaagtttctgt |
39679965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 467 - 513
Target Start/End: Original strand, 41239896 - 41239942
Alignment:
| Q |
467 |
cttataaaaaacctcatgatttgaaaaaggcttggaaagtttctgtg |
513 |
Q |
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||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
41239896 |
cttataaaagaccttatgatttgaaaaaggcttggaaagtttctgtg |
41239942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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