View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11822_high_11 (Length: 260)
Name: NF11822_high_11
Description: NF11822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11822_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 15 - 108
Target Start/End: Complemental strand, 5174754 - 5174657
Alignment:
| Q |
15 |
cagagaatattggaattgagactgtacaaatgatacaagtattttttctcatacgcaacatg----catgagttagataaatgttcattttacatatg |
108 |
Q |
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| T |
5174754 |
cagagaatattggaattgagactgtacaaatgatacaagtattttttctcatacgcaacatgcatgcatgagttagataaatgttcattttaaatatg |
5174657 |
T |
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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 5174650 - 5174608
Alignment:
| Q |
198 |
tattattgtctacttgctccaattattaacagcaacatatctt |
240 |
Q |
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| T |
5174650 |
tattattgtctacttgctccaattattaacagcaacatatctt |
5174608 |
T |
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