View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11822_high_13 (Length: 253)
Name: NF11822_high_13
Description: NF11822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11822_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 149; Significance: 8e-79; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 87 - 239
Target Start/End: Original strand, 8439407 - 8439559
Alignment:
| Q |
87 |
acaattatgaaattgaattatattttcaacgaaatggaaaagagttaaatcaaaccacaatttaaaagcatctgtggtgaataaatgaaaatgcatattt |
186 |
Q |
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| T |
8439407 |
acaattatgaaattgaattatatcttcaacgaaatggaaaagagttaaatcaaaccacaatttaaaagcatctgtggtgaataaatgaaaatgcatattt |
8439506 |
T |
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| Q |
187 |
actcggggacatattttaaaacaacaaatttaccaaagagggatgctatttat |
239 |
Q |
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| T |
8439507 |
actcggggacatattttaaaacaacaaatttaccaaagagggatgctatttat |
8439559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 8439203 - 8439292
Alignment:
| Q |
1 |
ttgattgcaaaccgatgaagtatgatatacgatgcaggatggaataagagttaaagaagaataagaatactactaaaggatttcaaacaa |
90 |
Q |
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| T |
8439203 |
ttgattgcaaaccgatgaagtatgatatacgatgcaggatggaataagagttaaagaagaataagaatactactaaaggatttcaaacaa |
8439292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 118 - 175
Target Start/End: Complemental strand, 52590749 - 52590692
Alignment:
| Q |
118 |
aaatggaaaagagttaaatcaaaccacaatttaaaagcatctgtggtgaataaatgaa |
175 |
Q |
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| T |
52590749 |
aaatggaaaagagttaaaccaaagcacggtttaaaaacatcaatggtgaataaatgaa |
52590692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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