View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11822_high_17 (Length: 229)
Name: NF11822_high_17
Description: NF11822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11822_high_17 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 8 - 229
Target Start/End: Complemental strand, 30338659 - 30338438
Alignment:
| Q |
8 |
ataaaaactagatttcattttctaacggatcaaatgaacaaagccaagtttgaagaaatcaacatcaatcatcttctcatctattcttgttatgtattgg |
107 |
Q |
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| T |
30338659 |
ataaaaactagatttcattttctaacggatcaaatgaacaaagccaagtttgaagaaatcaacatcaatcatcttctcatctattcttgttatgtactgg |
30338560 |
T |
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| Q |
108 |
aaggttattatgtataactaattctctctatatagttagaattatgttttgtttgctatgattttgatgtagatatttgatctgactaattatattcaac |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
30338559 |
aaggttattatgtataactaattctctctatatagttagaattatgttttgtttgctatgatttcgatgtagatatttgatctgactaattatatacaac |
30338460 |
T |
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| Q |
208 |
ttttgtttcattatatcaatga |
229 |
Q |
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|||||||||||||||||||||| |
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| T |
30338459 |
ttttgtttcattatatcaatga |
30338438 |
T |
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