View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11822_low_1 (Length: 625)

Name: NF11822_low_1
Description: NF11822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11822_low_1
NF11822_low_1
[»] chr8 (2 HSPs)
chr8 (126-603)||(43601446-43601923)
chr8 (12-89)||(43601369-43601446)
[»] chr3 (1 HSPs)
chr3 (554-603)||(22239086-22239135)
[»] chr1 (1 HSPs)
chr1 (554-603)||(37560604-37560653)
[»] chr5 (1 HSPs)
chr5 (266-350)||(29259210-29259294)
[»] chr2 (2 HSPs)
chr2 (554-595)||(22436299-22436340)
chr2 (341-405)||(1175999-1176062)
[»] chr4 (1 HSPs)
chr4 (341-413)||(8440677-8440748)


Alignment Details
Target: chr8 (Bit Score: 454; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 126 - 603
Target Start/End: Original strand, 43601446 - 43601923
Alignment:
Q  126 taataaaatttgcggttacaaaaaacattttatcaagaatttgagttgttttagaaaataaattgtattatgagcttaactagtttatattccacattgg 225  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  43601446 taataaaatttgcggtttcaaaaaacattttatcaagaatttgagtttttttagaaaataaattgtattatgagcttaactagtttatattccacactgg 43601545  T
Q  226 tttgaattaagaaaaaatgagtaaaatagaggaaataattattagtcttagtagtgttgtggcagttttaagggattacttgcaatgcaagtattgtata 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43601546 tttgaattaagaaaaaatgagtaaaatagaggaaataattattagtcttagtagtgttgtggcagttttaagggattacttgcaatgcaagtattgtata 43601645  T
Q  326 cttttatgtttagcatttgagattggccatatatatgcctcccttgtatcattagagaattgaatgaaataaaaatttcacatcacaacctgaaacctgt 425  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  43601646 cttttatgtttagcatttgagattggccatatatatgcctcccttgtatcattagagaattgaatgaaataaaaatttcaaatcacaacctgaaacctgt 43601745  T
Q  426 ggttattataattttaatgatgctttgtgcgaagttgcaatggcaattggcaaatgctgatataaatctgggcatatgctagactgagtacaactgaaag 525  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  43601746 ggttattataattttaatgatgctttgtgcgaagttgcattggcaattggcaaatgctgctataaatctgggcatatgctagactgagtacaactgaaag 43601845  T
Q  526 ggaactgagaattatgtctccaattgatatgatatcttcaaattatgaaaattatttctgcaccaaaacacagccccg 603  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43601846 ggaactgagaattatgtctccaattgatatgatatcttcaaattatgaaaattatttctgcaccaaaacacagccccg 43601923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 43601369 - 43601446
Alignment:
Q  12 agaagcaaaggaatataaatatgacataatggttaatgtgaatgagttaaggagtggagttataaagagacccgaggt 89  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43601369 agaaacaaaggaatataaatatgacataatggttaatgtgaatgagttaaggagtggagttataaagagacccgaggt 43601446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 554 - 603
Target Start/End: Complemental strand, 22239135 - 22239086
Alignment:
Q  554 atgatatcttcaaattatgaaaattatttctgcaccaaaacacagccccg 603  Q
    |||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  22239135 atgatatcttaaaattatgaaaattatttctgcaccaaaacacagtcccg 22239086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 554 - 603
Target Start/End: Complemental strand, 37560653 - 37560604
Alignment:
Q  554 atgatatcttcaaattatgaaaattatttctgcaccaaaacacagccccg 603  Q
    |||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  37560653 atgatatcttaaaattatgaaaattatttctgcaccaaaacacagtcccg 37560604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 266 - 350
Target Start/End: Original strand, 29259210 - 29259294
Alignment:
Q  266 attagtcttagtagtgttgtggcagttttaagggattacttgcaatgcaagtattgtatacttttatgtttagcatttgagattg 350  Q
    ||||||||  ||||| |||||| |||||||||| |||||||| |||||||||| | ||| |||||   |||||||||||||||||    
T  29259210 attagtctcggtagttttgtggtagttttaaggaattacttgtaatgcaagtaatctattcttttggatttagcatttgagattg 29259294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 554 - 595
Target Start/End: Complemental strand, 22436340 - 22436299
Alignment:
Q  554 atgatatcttcaaattatgaaaattatttctgcaccaaaaca 595  Q
    |||||||||| ||||||||||||| |||||||||||||||||    
T  22436340 atgatatcttaaaattatgaaaatgatttctgcaccaaaaca 22436299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 341 - 405
Target Start/End: Original strand, 1175999 - 1176062
Alignment:
Q  341 tttgagattggccatatatatgcctcccttgtatcattagagaattgaatgaaataaaaatttca 405  Q
    |||||||||||| ||| ||| ||||||||||||||||||| ||| |||||||||| || ||||||    
T  1175999 tttgagattggctataaataagcctcccttgtatcattagcgaa-tgaatgaaatcaatatttca 1176062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 341 - 413
Target Start/End: Original strand, 8440677 - 8440748
Alignment:
Q  341 tttgagattggccatatatatgcctcccttgtatcattagagaattgaatgaaataaaaatttcacatcacaa 413  Q
    ||||| |||||| ||| ||| ||||||||||||||||||||| || ||||||||| || ||||||||| ||||    
T  8440677 tttgaaattggctataaataagcctcccttgtatcattagag-atggaatgaaatcaatatttcacattacaa 8440748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University