View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11822_low_10 (Length: 297)

Name: NF11822_low_10
Description: NF11822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11822_low_10
NF11822_low_10
[»] chr1 (2 HSPs)
chr1 (1-158)||(38186651-38186808)
chr1 (217-289)||(38186837-38186909)
[»] chr8 (1 HSPs)
chr8 (71-119)||(27823260-27823308)
[»] chr7 (2 HSPs)
chr7 (1-47)||(28117312-28117358)
chr7 (64-120)||(38947521-38947577)
[»] chr4 (1 HSPs)
chr4 (211-289)||(14135161-14135239)
[»] chr2 (2 HSPs)
chr2 (1-47)||(29868975-29869021)
chr2 (236-287)||(33911609-33911660)
[»] scaffold0700 (1 HSPs)
scaffold0700 (58-119)||(5144-5205)
[»] chr3 (2 HSPs)
chr3 (51-126)||(36747231-36747306)
chr3 (1-47)||(22850935-22850981)
[»] chr6 (1 HSPs)
chr6 (58-127)||(5720636-5720705)
[»] chr5 (1 HSPs)
chr5 (2-47)||(11713202-11713247)


Alignment Details
Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 38186651 - 38186808
Alignment:
Q  1 ttgatatgtcaatgaaatacatcaaaattaatgtcttatgaactttttcgattaacatcaaactttatagatatgatctatgttataatatcttccaatt 100  Q
    ||||||||| ||||| ||||| |||||||||  ||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||| ||| |||||    
T  38186651 ttgatatgttaatgagatacaccaaaattaacatcttatgaatttttccgattaacatcaaattttatagatatgatctatgttataatacctttcaatt 38186750  T
Q  101 caacggtcaattttgtaataccattatgcgataaataattatgcgagataacatatta 158  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||  |||||||    
T  38186751 caacagtcaattttgtaataccattatgcgataaataattatccgagatggcatatta 38186808  T

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Target: chr1; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 217 - 289
Target Start/End: Original strand, 38186837 - 38186909
Alignment:
Q  217 ataacgttgtcatatttgatatcatgtgcgtgtcaaagacataataggataattgttatcttgtctatatcat 289  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  38186837 ataacgttgtcatatttgatatcatgtgcgtgtcaaaggcataataggataattgttatcttgtctatatcat 38186909  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 27823260 - 27823308
Alignment:
Q  71 atatgatctatgttataatatcttccaattcaacggtcaattttgtaat 119  Q
    |||||||||||||||||||||||| |||| |||||||| ||||||||||    
T  27823260 atatgatctatgttataatatctttcaatccaacggtcgattttgtaat 27823308  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 28117358 - 28117312
Alignment:
Q  1 ttgatatgtcaatgaaatacatcaaaattaatgtcttatgaactttt 47  Q
    |||||||||||||||||| |||||||||||| |||| ||||||||||    
T  28117358 ttgatatgtcaatgaaatgcatcaaaattaacgtctaatgaactttt 28117312  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 120
Target Start/End: Complemental strand, 38947577 - 38947521
Alignment:
Q  64 tttatagatatgatctatgttataatatcttccaattcaacggtcaattttgtaata 120  Q
    |||||| | |||||||||||| ||||||||| |||| |||| |||||||||||||||    
T  38947577 tttatacacatgatctatgttttaatatctttcaatccaacagtcaattttgtaata 38947521  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 289
Target Start/End: Complemental strand, 14135239 - 14135161
Alignment:
Q  211 gataaaataacgttgtcatatttgatatcatgtgcgtgtcaaagacataataggataattgttatcttgtctatatcat 289  Q
    |||||||||| ||| || |||||  ||||||||||| |||||| |||| ||| ||||| ||||||| ||||||||||||    
T  14135239 gataaaataatgttatcttatttattatcatgtgcgcgtcaaatacatgatatgataaatgttatcatgtctatatcat 14135161  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 29868975 - 29869021
Alignment:
Q  1 ttgatatgtcaatgaaatacatcaaaattaatgtcttatgaactttt 47  Q
    ||||||| ||||||| ||| |||||||||||||||||||||||||||    
T  29868975 ttgatatttcaatgagatatatcaaaattaatgtcttatgaactttt 29869021  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 236 - 287
Target Start/End: Complemental strand, 33911660 - 33911609
Alignment:
Q  236 tatcatgtgcgtgtcaaagacataataggataattgttatcttgtctatatc 287  Q
    |||||||||||  ||||| |||||||||||||| ||||||| ||||||||||    
T  33911660 tatcatgtgcgcatcaaacacataataggataagtgttatcatgtctatatc 33911609  T

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Target: scaffold0700 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0700
Description:

Target: scaffold0700; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 119
Target Start/End: Complemental strand, 5205 - 5144
Alignment:
Q  58 tcaaactttatagatatgatctatgttataatatcttccaattcaacggtcaattttgtaat 119  Q
    |||||||||||||| |||||||||||||||||| ||| |||| ||||| | |||||| ||||    
T  5205 tcaaactttatagacatgatctatgttataatagctttcaatccaacgtttaattttttaat 5144  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 126
Target Start/End: Original strand, 36747231 - 36747306
Alignment:
Q  51 attaacatcaaactttatagatatgatctatgttataatatcttccaattcaacggtcaattttgtaataccatta 126  Q
    ||||| |||||| |||||||| ||||| ||||||||||||| || ||||  ||| ||||||||| |||||| ||||    
T  36747231 attaatatcaaattttatagaaatgatatatgttataatatgtttcaatctaacagtcaattttttaatacgatta 36747306  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 22850935 - 22850981
Alignment:
Q  1 ttgatatgtcaatgaaatacatcaaaattaatgtcttatgaactttt 47  Q
    |||| ||||||| || || ||||||||||||||||||||||||||||    
T  22850935 ttgacatgtcaacgagatgcatcaaaattaatgtcttatgaactttt 22850981  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 127
Target Start/End: Original strand, 5720636 - 5720705
Alignment:
Q  58 tcaaactttatagatatgatctatgttataatatcttccaattcaacggtcaattttgtaataccattat 127  Q
    ||||| |||||||| ||| |||||| ||| ||||||| |||||||||  ||||||||||| ||| |||||    
T  5720636 tcaaattttatagacatggtctatgctattatatctttcaattcaacaatcaattttgtattacgattat 5720705  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 11713202 - 11713247
Alignment:
Q  2 tgatatgtcaatgaaatacatcaaaattaatgtcttatgaactttt 47  Q
    |||||||||||| | |||| |||||||||| |||||||||||||||    
T  11713202 tgatatgtcaattagatacctcaaaattaacgtcttatgaactttt 11713247  T

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