View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11822_low_13 (Length: 258)
Name: NF11822_low_13
Description: NF11822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11822_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 10 - 253
Target Start/End: Original strand, 8438903 - 8439145
Alignment:
| Q |
10 |
atgaatgtgatgatcggacataggggcaaacccctatttattttatttctaagttttgtgcaggttgtttctatcttttacttagataatcgtttcaagc |
109 |
Q |
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| T |
8438903 |
atgaatgtgatgatcagacataggggcaaacccctatttattgtatttctaagttttgtgcaggttgtttctatcttt-acttagataatcgtttcaagc |
8439001 |
T |
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| Q |
110 |
caatgatattgtaaataagcttaaggaattcacttctttcagctgggacccaatccattttaaaataattgtaaaagatgtgttaagtggtgattttatc |
209 |
Q |
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| T |
8439002 |
caatgatattgtaaataagcttaaggaattcacttctttcagctgggacccaatccattttaaaataattgtaaaagatttgttcagtggtgattttatc |
8439101 |
T |
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| Q |
210 |
actaataatagaaaaggaaaataatgatattgcattgatcaaat |
253 |
Q |
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| T |
8439102 |
actaataatagaaaaggaaaataatgatattgcattgatcaaat |
8439145 |
T |
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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 253
Target Start/End: Complemental strand, 31947416 - 31947332
Alignment:
| Q |
171 |
aaaataattgtaaaagatgtgttaagtggtgattttatcactaataata--gaaaaggaaaataatgatattgcattgatcaaat |
253 |
Q |
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| T |
31947416 |
aaaatgattgtgaaagatatgttcaatggtgattttgtcactaataataatagaaaggaaaacaatgatattgcattgataaaat |
31947332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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