View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11822_low_15 (Length: 249)
Name: NF11822_low_15
Description: NF11822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11822_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 34684995 - 34685129
Alignment:
| Q |
1 |
aaagaaaaagttttgaaatagtgacataacacagtagtgggtgggcctaagaaggtccaaaacttacnnnnnnnnntagaaaattgtatgaattcaaaca |
100 |
Q |
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| T |
34684995 |
aaagaaaaagttttgaaatagtgacataccacagtagtggatgggcctaagaaggtccaaaacttgaaaaaaaagaaaaaaaattgtatgaattcaaaca |
34685094 |
T |
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| Q |
101 |
tgtgattcaatgcctatttagtttagttagtattt |
135 |
Q |
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| T |
34685095 |
tgtgattcaatgcctatttagtttagttagtattt |
34685129 |
T |
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Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 140 - 249
Target Start/End: Original strand, 34685269 - 34685378
Alignment:
| Q |
140 |
aaaatagttagactcgtaaggatttcgccttttaaaaaagtatatgttagagtgagtttaaaaagaaagtgttcataatactcctctttaattatactca |
239 |
Q |
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|||||||||||| ||| |||| ||||| || ||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
34685269 |
aaaatagttagaatcgcaagggtttcgactaataaaaaagtctatattagagtgagtttaaaaagaaagtgttcataacactcctctttaattatactca |
34685368 |
T |
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| Q |
240 |
tatttttctc |
249 |
Q |
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|||||||||| |
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| T |
34685369 |
tatttttctc |
34685378 |
T |
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