View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11822_low_16 (Length: 249)
Name: NF11822_low_16
Description: NF11822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11822_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 26967661 - 26967901
Alignment:
| Q |
1 |
actttagttgaccaactagcaagatctcaacctcattggtttgacagaccaagtcatgccaactcaaatcgtcctcattcaacactgattcaactgttca |
100 |
Q |
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| T |
26967661 |
actttagttgaccaactagcaagatctcaacctcattggtttgactgatcaagtcatgccaactcaaatcgtcctcattcaacactgattcaactgttca |
26967760 |
T |
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| Q |
101 |
aaccagactgattcatcgtcactcaacacttgtttgatttttaaagtcaggccagccaactcagctcatcttcacttaatactgttatgtttttaagtta |
200 |
Q |
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| T |
26967761 |
aaccagaccgatttatcgtcactcaacacttgtttgatttttaaagtcaggccagccaactcaactcatcttcacttaatactgttatgtttttaagtta |
26967860 |
T |
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| Q |
201 |
gctatgctctgaaatactgtatgttttaagttacctatgct |
241 |
Q |
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| T |
26967861 |
gttatactctaaaatactgtatgttttaagttacctatgct |
26967901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 120 - 210
Target Start/End: Original strand, 11801002 - 11801091
Alignment:
| Q |
120 |
cactcaacacttgtttgatttttaaagtcaggccagccaactcagctcatcttcacttaatactgttatgtttttaagttagctatgctct |
210 |
Q |
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| T |
11801002 |
cactcaacactggtttgactgttcaagacagaccaaccagctcagctcatcttcacttgatactattctg-ttttaagttaactatgctct |
11801091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 182
Target Start/End: Original strand, 31679030 - 31679068
Alignment:
| Q |
144 |
aagtcaggccagccaactcagctcatcttcacttaatac |
182 |
Q |
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| T |
31679030 |
aagtcaggccagccagctcagctcatcttcacttaatac |
31679068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 182
Target Start/End: Original strand, 13968634 - 13968694
Alignment:
| Q |
123 |
tcaacacttgtttgattttt-aaagtcaggccagccaactcagctcatcttcacttaatac |
182 |
Q |
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|||||||| | |||||| || ||||||| |||||||| |||| |||||||||||||||||| |
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| T |
13968634 |
tcaacactggcttgattgttcaaagtcatgccagccagctcatctcatcttcacttaatac |
13968694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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