View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11822_low_19 (Length: 225)
Name: NF11822_low_19
Description: NF11822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11822_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 34685642 - 34685848
Alignment:
| Q |
1 |
atattattaccagcagcaacaaattttcattacaaagactgtatggtagataatctgtctagaaattgagtaaaattttcatcagtatccaacaagctaa |
100 |
Q |
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| T |
34685642 |
atattattaccagcagcaacaaattttcattacaaagactgtatggtagataatctgtctagaaattgagtaaaattttcatcagtatccaacaagctaa |
34685741 |
T |
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| Q |
101 |
ttcttacatattttgggctaaccccaaagtgttttccacttctcgttatgatgttgtgtgctctaaggaagctttcacagtcttccacatttccctcaca |
200 |
Q |
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| T |
34685742 |
ttcttacatattttgggctaaccccaaagtgttttccacttctcgttatgatgttgtgtgctctaaggaagctttcacagtcttccacatttccctcaca |
34685841 |
T |
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| Q |
201 |
cttcaac |
207 |
Q |
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||||||| |
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| T |
34685842 |
cttcaac |
34685848 |
T |
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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 143
Target Start/End: Original strand, 43611302 - 43611374
Alignment:
| Q |
71 |
taaaattttcatcagtatccaacaagctaattcttacatattttgggctaaccccaaagtgttttccacttct |
143 |
Q |
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|||||| |||||| |||||||||| |||||||||||||||||||||||| ||||||| |||| |||||||| |
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| T |
43611302 |
taaaatgttcatctgtatccaacatgctaattcttacatattttgggctcgccccaaattgttcaccacttct |
43611374 |
T |
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