View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11822_low_2 (Length: 509)

Name: NF11822_low_2
Description: NF11822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11822_low_2
NF11822_low_2
[»] chr6 (4 HSPs)
chr6 (12-438)||(2188259-2188689)
chr6 (16-110)||(2170263-2170357)
chr6 (434-483)||(2188731-2188780)
chr6 (434-482)||(13587626-13587674)
[»] scaffold0286 (1 HSPs)
scaffold0286 (16-110)||(12904-12998)
[»] chr8 (3 HSPs)
chr8 (442-484)||(6863082-6863124)
chr8 (445-483)||(4472298-4472336)
chr8 (449-487)||(10310487-10310525)
[»] chr7 (3 HSPs)
chr7 (446-486)||(31718945-31718985)
chr7 (447-485)||(47872988-47873026)
chr7 (445-485)||(8235026-8235066)
[»] chr5 (2 HSPs)
chr5 (30-81)||(16694585-16694636)
chr5 (442-484)||(2818990-2819032)
[»] chr4 (2 HSPs)
chr4 (445-484)||(43006714-43006753)
chr4 (446-483)||(6122148-6122185)
[»] chr3 (1 HSPs)
chr3 (137-187)||(41244837-41244886)
[»] chr1 (2 HSPs)
chr1 (442-484)||(7890421-7890463)
chr1 (442-483)||(7354187-7354228)


Alignment Details
Target: chr6 (Bit Score: 406; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 12 - 438
Target Start/End: Original strand, 2188259 - 2188689
Alignment:
Q  12 gcagagaggaagaattgtttatagaaagtggagttcacgtattcaagctgaaaactagtatggaggatattcgatttaccaatccgcataattgagaaag 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2188259 gcagagaggaagaattgtttatagaaagtggagttcacgtattcaagctgaaaactagtatggaggatattcgatttaccaatccgcataattgagaaag 2188358  T
Q  112 tttcaaacccaacaaagtagaaatattttcttccatcttcatttagagtctcttagcttttacttctagtaattatgttgtcattgagccttttggaggt 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2188359 tttcaaacccaacaaagtagaaatattttcttccatcttcatttagagtctcttagcttttacttctagtaattatgttgtcattgagccttttggaggt 2188458  T
Q  212 tgtcatcaactttggccctcagatttagagttcatggtttttgttgttgtaacatctgagacaataatttcatcggtattggttttcaataacaagtgaa 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2188459 tgtcatcaactttggccctcagatttagagttcatggtttttgttgttgtaacatctgagacaataatttcatcggtattggttttcaataacaagtgaa 2188558  T
Q  312 atcaaaataattgtgtctcaaaattaagttcatgtttgtttttc----tttgcaacactaattaaatcaccgtcaaccatcttttgtgttttgataaact 407  Q
    | ||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  2188559 aacaaaataattgtgtctcaaaattaagttcatgtttgtttttccttgtttgcaacactaattaagtcaccgtcaaccatcttttgtgttttgataaact 2188658  T
Q  408 tttttcaagtatgtgaaataagccaattcta 438  Q
    |||||||||||||||||||||||||||||||    
T  2188659 tttttcaagtatgtgaaataagccaattcta 2188689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 16 - 110
Target Start/End: Complemental strand, 2170357 - 2170263
Alignment:
Q  16 agaggaagaattgtttatagaaagtggagttcacgtattcaagctgaaaactagtatggaggatattcgatttaccaatccgcataattgagaaa 110  Q
    |||||||| |||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||| || | |||||||    
T  2170357 agaggaagcattggttatagaaagtggaattcacgtattcaagctgaaaagtagtatggaggatattcgattcaccaatccgtatgaatgagaaa 2170263  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 434 - 483
Target Start/End: Original strand, 2188731 - 2188780
Alignment:
Q  434 ttctacctttggatcaataaatcttacaattaaattaaatgaaatatgat 483  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2188731 ttctacctttggatcaataaatcttacaattaaattaaatgaaatatgat 2188780  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 434 - 482
Target Start/End: Original strand, 13587626 - 13587674
Alignment:
Q  434 ttctacctttggatcaataaatcttacaattaaattaaatgaaatatga 482  Q
    ||||||| |||||||||||||||| || |||||||| ||||||||||||    
T  13587626 ttctaccattggatcaataaatctcactattaaattgaatgaaatatga 13587674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 12904 - 12998
Alignment:
Q  16 agaggaagaattgtttatagaaagtggagttcacgtattcaagctgaaaactagtatggaggatattcgatttaccaatccgcataattgagaaa 110  Q
    |||||||| |||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||| || | |||||||    
T  12904 agaggaagcattggttatagaaagtggaattcacgtattcaagctgaaaagtagtatggaggatattcgattcaccaatccgtatgaatgagaaa 12998  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 442 - 484
Target Start/End: Original strand, 6863082 - 6863124
Alignment:
Q  442 ttggatcaataaatcttacaattaaattaaatgaaatatgatg 484  Q
    |||||||||||||||| || |||||||||||||||||||||||    
T  6863082 ttggatcaataaatctcaccattaaattaaatgaaatatgatg 6863124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 445 - 483
Target Start/End: Complemental strand, 4472336 - 4472298
Alignment:
Q  445 gatcaataaatcttacaattaaattaaatgaaatatgat 483  Q
    ||||||||||||||||| ||||||||||||| |||||||    
T  4472336 gatcaataaatcttacatttaaattaaatgagatatgat 4472298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 449 - 487
Target Start/End: Complemental strand, 10310525 - 10310487
Alignment:
Q  449 aataaatcttacaattaaattaaatgaaatatgatgata 487  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  10310525 aataaattctacaattaaattaaatgaaatatgatgata 10310487  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 446 - 486
Target Start/End: Complemental strand, 31718985 - 31718945
Alignment:
Q  446 atcaataaatcttacaattaaattaaatgaaatatgatgat 486  Q
    ||||||||||||||| ||||||| |||||||||||||||||    
T  31718985 atcaataaatcttaccattaaatcaaatgaaatatgatgat 31718945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 447 - 485
Target Start/End: Original strand, 47872988 - 47873026
Alignment:
Q  447 tcaataaatcttacaattaaattaaatgaaatatgatga 485  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  47872988 tcaataaattttactattaaattaaatgaaatatgatga 47873026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 445 - 485
Target Start/End: Original strand, 8235026 - 8235066
Alignment:
Q  445 gatcaataaatcttacaattaaattaaatgaaatatgatga 485  Q
    ||||||||||||| || ||| ||||||||||||||||||||    
T  8235026 gatcaataaatctcactatttaattaaatgaaatatgatga 8235066  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 16694585 - 16694636
Alignment:
Q  30 ttatagaaagtggagttcacgtattcaagctgaaaactagtatggaggatat 81  Q
    |||||||||||||| ||||| ||||||||| ||||| ||| |||||||||||    
T  16694585 ttatagaaagtggaattcacttattcaagcagaaaagtagcatggaggatat 16694636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 442 - 484
Target Start/End: Original strand, 2818990 - 2819032
Alignment:
Q  442 ttggatcaataaatcttacaattaaattaaatgaaatatgatg 484  Q
    |||||||||||||||| || |||| ||||||||||||||||||    
T  2818990 ttggatcaataaatctcaccattagattaaatgaaatatgatg 2819032  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 445 - 484
Target Start/End: Original strand, 43006714 - 43006753
Alignment:
Q  445 gatcaataaatcttacaattaaattaaatgaaatatgatg 484  Q
    ||||||||||||||||||||| || |||||||||||||||    
T  43006714 gatcaataaatcttacaattagatcaaatgaaatatgatg 43006753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 483
Target Start/End: Original strand, 6122148 - 6122185
Alignment:
Q  446 atcaataaatcttacaattaaattaaatgaaatatgat 483  Q
    |||||||||| |||| ||||||||||||||||||||||    
T  6122148 atcaataaattttaccattaaattaaatgaaatatgat 6122185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 137 - 187
Target Start/End: Original strand, 41244837 - 41244886
Alignment:
Q  137 ttttcttccatcttcatttagagtctcttagcttttacttctagtaattat 187  Q
    ||||||||||| ||||||| |||||||||||  ||||||||||||||||||    
T  41244837 ttttcttccatattcatttggagtctcttag-gtttacttctagtaattat 41244886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 442 - 484
Target Start/End: Original strand, 7890421 - 7890463
Alignment:
Q  442 ttggatcaataaatcttacaattaaattaaatgaaatatgatg 484  Q
    |||||||||||||| | || |||||||||||||||||||||||    
T  7890421 ttggatcaataaatttcaccattaaattaaatgaaatatgatg 7890463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 483
Target Start/End: Complemental strand, 7354228 - 7354187
Alignment:
Q  442 ttggatcaataaatcttacaattaaattaaatgaaatatgat 483  Q
    ||||||||||||||||||| ||||||| |||||| |||||||    
T  7354228 ttggatcaataaatcttaccattaaatcaaatgagatatgat 7354187  T

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