View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11822_low_3 (Length: 464)
Name: NF11822_low_3
Description: NF11822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11822_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Complemental strand, 42742011 - 42741568
Alignment:
| Q |
1 |
tgcggttgaagacaatttgggagtgtcagtcaatggtggagaggttcggatttcactagcagcagtaatgagaaaggagaaacttcaataacatgacgtg |
100 |
Q |
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| T |
42742011 |
tgcggttgaagacaatttgggagtgtcagtcaatggtggagaggttcggatttcactagcagcagtaatgagaaaggagaaacttcaataacatgacgtg |
42741912 |
T |
|
| Q |
101 |
gaaaaggatactcaacctcaaggtatgccaaatctaacactcaaagctacaattattagaagttaggtttgacaagaataggcttggggaggagactaac |
200 |
Q |
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| T |
42741911 |
gaaaaggatactcaacctcaaggtatgccaaatctaacactcaaagctacaattattagaagttaggtttgacaagaataggcttggggaggagactaac |
42741812 |
T |
|
| Q |
201 |
tatgcagaagaaaatgatgagaagttttgaaacaatgttgctagcatgtggaagtaatgaagtt-aaggaaattcatggtaccttaacaatggtgcaagc |
299 |
Q |
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| T |
42741811 |
tatgcagaagaaaatgatgagaagttttgaaacaatgttgctagcatgtggaagtaatgaagttaaaggaaattcatggtaccttaacaatggtgcaagc |
42741712 |
T |
|
| Q |
300 |
aaccatatgtgcgaacaaatgagcatatatattcttggatcttgatgaatcagtaagtgacaattaatgtctcatttggtggtgatgtaaaaattctcgt |
399 |
Q |
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| T |
42741711 |
aaccatatgtgcgaacaaatgagcatatatattcttggatcttgatgaatcagtaagtgacaattaatgtctcatttggtggtgatgtaaaaattctcat |
42741612 |
T |
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| Q |
400 |
gaaagnnnnnnnngtatgtaatatcttaatccaaatgcctttacta |
445 |
Q |
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| T |
42741611 |
gaaag--aaaaaagtatgtaatatcttaatccaaatgcctttacta |
42741568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 213 - 446
Target Start/End: Complemental strand, 21745918 - 21745691
Alignment:
| Q |
213 |
aatgatgagaagttttgaaacaatgttgctagcatgtggaagtaatgaagttaaggaaattcatggtaccttaacaatggtgcaagcaaccatatgtgcg |
312 |
Q |
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| T |
21745918 |
aatgatgagaagttttgaaacaatgttgctagcatgtggaagtaatgaagttaaggaaattcatggtaccttaacaatggtgcaagcaaccatatgtgcg |
21745819 |
T |
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| Q |
313 |
aacaaatgagcatatatattcttggatcttgatgaatcagtaagtgacaattaatgtctcatttggtggtgatgtaaaaattctcgtgaaagnnnnnnnn |
412 |
Q |
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| T |
21745818 |
aacaaatgagcatatatattcttggatcttgatgaatcagtaagtgac----aatgtctcatttggtggtgatgtaaaaattctcatgaaag--aaaaaa |
21745725 |
T |
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| Q |
413 |
gtatgtaatatcttaatccaaatgcctttactat |
446 |
Q |
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| T |
21745724 |
gtatgtaatatcttaatccaaatgcctttactat |
21745691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 262
Target Start/End: Complemental strand, 4890721 - 4890685
Alignment:
| Q |
226 |
tttgaaacaatgttgctagcatgtggaagtaatgaag |
262 |
Q |
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| T |
4890721 |
tttgaaacaatgctgctagcacgtggaagtaatgaag |
4890685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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