View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11822_low_4 (Length: 459)
Name: NF11822_low_4
Description: NF11822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11822_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 260; Significance: 1e-145; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 141 - 442
Target Start/End: Complemental strand, 8594052 - 8593748
Alignment:
| Q |
141 |
ttcactacagaagggcatgatggttgaggtacacat-tatcaaccactctaataattat---cctacatataagctacacatagtaagagatctatgcaa |
236 |
Q |
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| T |
8594052 |
ttcactccagaagggcatgatggttgaggtacacatatatcaaccactctaataattattatcctacatataagctacacatagtaagagatctatgcaa |
8593953 |
T |
|
| Q |
237 |
tattggctcctatcttgctcaaccttcaacagctgattgttaaaatgtacagaggtgcacataactagccacgcaatcaacaagttccttcacaagaatt |
336 |
Q |
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| T |
8593952 |
tattggctcctatcttgctcaaccttcaacagctgattgttaaaatgtacagaggtgcacataactagccacgcaatcaacaagttccttgacaagaatt |
8593853 |
T |
|
| Q |
337 |
gggtcaccgtacacgctgaaaagtaatttacaccagaaataaacattctttctttccaaaatttacacacaaacatttaagaaaacctcagaattatgag |
436 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
8593852 |
gggtcaccgtacacgctgaaaagtaatttacaccag-aataaacattctttcttttcaaaatttacacacaaacatttaagaaaaactcagaattatgag |
8593754 |
T |
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| Q |
437 |
atctat |
442 |
Q |
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|||||| |
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| T |
8593753 |
atctat |
8593748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 3 - 115
Target Start/End: Complemental strand, 8594224 - 8594112
Alignment:
| Q |
3 |
aatggagatgatgcggaggtacacaaataaaccttgatcatatttatgcacatacttataccaaattattgcattttaggtttataccctccccagacca |
102 |
Q |
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| T |
8594224 |
aatggagatggtgcggagttacacgaataaaccttgatcatatttatgcacatacttataccaaattattgcattttaggtttataccctccccagacca |
8594125 |
T |
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| Q |
103 |
gtggcagcaacat |
115 |
Q |
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| T |
8594124 |
gtggcagcaacat |
8594112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 284 - 442
Target Start/End: Complemental strand, 8598456 - 8598299
Alignment:
| Q |
284 |
tacagaggtgcacataactagccacgcaatcaacaagttccttcacaagaattgggtcaccgtacacgctgaaaagtaatttacaccagaaataaacatt |
383 |
Q |
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|||| ||||||||||||||||||||| |||| |||||||||| ||| ||||||| ||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
8598456 |
tacaaaggtgcacataactagccacgtgatcagcaagttccttgacaggaattggatcaccgtacacgctgaaaagtaatttatgccag-aataaacatt |
8598358 |
T |
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| Q |
384 |
ctttctttccaaaatttacacacaaacatttaagaaaacctcagaattatgagatctat |
442 |
Q |
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| T |
8598357 |
ctttctattcaaaatttacacgcaaacatctatgaaaacctcggaattatgagatctat |
8598299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 26 - 113
Target Start/End: Complemental strand, 8598597 - 8598510
Alignment:
| Q |
26 |
caaataaaccttgatcatatttatgcacatacttataccaaattattgcattttaggtttataccctccccagaccagtggcagcaac |
113 |
Q |
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| T |
8598597 |
caaataaacgctaatcaaatttgtgcacatacttataccaaattcttgcattttaggtttataccctccctagaccagtggcagcaac |
8598510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 280 - 359
Target Start/End: Original strand, 8581021 - 8581100
Alignment:
| Q |
280 |
aatgtacagaggtgcacataactagccacgcaatcaacaagttccttcacaagaattgggtcaccgtacacgctgaaaag |
359 |
Q |
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| T |
8581021 |
aatgtgcagaggtgcacgtaactagccacacggtcagcaagttccttgacaggaattggatcaccgtacacgctgaaaag |
8581100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 5e-26; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 214 - 290
Target Start/End: Complemental strand, 19866663 - 19866587
Alignment:
| Q |
214 |
cacatagtaagagatctatgcaatattggctcctatcttgctcaaccttcaacagctgattgttaaaatgtacagag |
290 |
Q |
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| T |
19866663 |
cacatagtaagagatctattcaatatttgctcctatcttgctcaaccttcagcagctgattgttaaaatttacagag |
19866587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 94
Target Start/End: Complemental strand, 19866831 - 19866740
Alignment:
| Q |
3 |
aatggagatgatgcggaggtacacaaataaaccttgatcatatttatgcacatacttataccaaattattgcattttaggtttataccctcc |
94 |
Q |
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| T |
19866831 |
aatggagatcctgaggagttacacacataaaccttattcaaatttgtacacatacttaaaccaaattattgcattttaattttacaccctcc |
19866740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 432
Target Start/End: Complemental strand, 19869173 - 19869076
Alignment:
| Q |
334 |
attgggtcaccgtacacgctgaaaagtaatttacaccagaaataaacattctttctttccaaaatttacacacaaacatttaagaaaacctcagaatta |
432 |
Q |
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|||||||| ||||||||||||||||| ||||||| | || |||||||||| |||||| |||||||| |||||| || ||| |||||||| |||||| |
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| T |
19869173 |
attgggtcgccgtacacgctgaaaagaaatttactctag-aataaacattttttcttgtcaaaatttgcacacagacgattataaaaacctctgaatta |
19869076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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