View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11822_low_5 (Length: 438)
Name: NF11822_low_5
Description: NF11822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11822_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 37 - 426
Target Start/End: Complemental strand, 42870120 - 42869728
Alignment:
| Q |
37 |
ggtgaatcaaaagctacaaatcataatctcaagttagaattaattccaaagaccaaatcaattatacacatctaaaattgcctctaaaatgcttctattt |
136 |
Q |
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| T |
42870120 |
ggtgaatcaaaagctacaaatcataatctcaagttagaattaattccagagaccaaatcaattatacacatctaaaattgcctctaaaatgcttctattt |
42870021 |
T |
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| Q |
137 |
tctaaatctgatcatacatcgatttataaccgttaaaaaaatattttttactagctcaattatttttatgaacnnnnnnnnnnattattatgaattttta |
236 |
Q |
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| T |
42870020 |
tctaaatctgatcatacatcgatttagaaccgttaaaaaaatatttttgactagctcaattatttttatgaacttttttt----ttattatgaattttaa |
42869925 |
T |
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| Q |
237 |
cttgctcatattgtataaatagaacgagtaactaataatgtcttc--------aattnnnnnnntcattagaaaaaagcagaggaaaataatgattgatt |
328 |
Q |
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| T |
42869924 |
cttgctcatattgtataaatagaacgagtaactaataatgtcttcaattaaaaaattaacaaaatcattag-aaaaagcagaggaaaataatgattgatt |
42869826 |
T |
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| Q |
329 |
accttgggaaattagaattgaggatttccttctgtccgtactttctccaggaatgagtgtcaccaattgttttagagactatgatccttgtctcatct |
426 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42869825 |
accttgggaaattagaattgaggatttccttctgtccgtactttctccaggaatgagtgtcaccaattgttttagagactatggtccttgtctcatct |
42869728 |
T |
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