View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11822_low_7 (Length: 409)
Name: NF11822_low_7
Description: NF11822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11822_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 7e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 26966799 - 26966991
Alignment:
| Q |
18 |
aaaaatgagagagaggaaggaaaaatagtgttggggctgaatttattaaggctaaacctaaattttttcgacgagattttcacagttccgaggggcattt |
117 |
Q |
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| T |
26966799 |
aaaaatgagagagaggaaggaaaaatagtgttggggctgaatttataaaggctaaacctaaatttttccgacgagtttttcacagttccgaggggcattt |
26966898 |
T |
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| Q |
118 |
tcatttttgcgaggggcatttcaattgcaaaactttcccaactactcatttcctcggatattataattatttacagaaatttctttcatttga |
210 |
Q |
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| T |
26966899 |
tcatttttgcgaggggcatttcaattgcaaaactttcccaactactcatttcctcggatattataattattttcagatatttctttcatttga |
26966991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 234 - 375
Target Start/End: Original strand, 26967014 - 26967152
Alignment:
| Q |
234 |
gcaactttctacttctcttgaatccaattttatgttcatagcttcttcgtttaggaggaannnnnnngctccactctcctagtaaaaattgaaccaaaca |
333 |
Q |
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| T |
26967014 |
gcaactttcttcttctcttgaatccaattttatgttcatagcttcttcgtttaggaggaa---atttgctccactctcctcgtaaaaattgaaccaaaca |
26967110 |
T |
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| Q |
334 |
caaaattgaacgcatccctccaaaatttttgaaccaaacgga |
375 |
Q |
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| T |
26967111 |
caaaatttaacacatccctccaaaaatttcgaaccaaacgga |
26967152 |
T |
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