View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11823_high_12 (Length: 334)
Name: NF11823_high_12
Description: NF11823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11823_high_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 161; Significance: 8e-86; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 27425846 - 27425682
Alignment:
| Q |
1 |
catcaaaagaggatgttgttatttatagcgtgttattatgctaattaaggagaaaaccaaggtcaaattttggtattcacactcatatacctaagtcaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
27425846 |
catcaaaagaggatgttgttatttatagcgtgttattatgctaattaaggagaaaaccaaggtcaaatttaggtattcacactcatatacctaagtcaaa |
27425747 |
T |
|
| Q |
101 |
gattggagttatctttccaacattcgccttcttcgacgtacacttcaaaatatagctgttcatta |
165 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27425746 |
gattggagttatctttccaacattcgccttcttcgacgtacacttcaaaatatagctgttcatta |
27425682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 242
Target Start/End: Complemental strand, 27425650 - 27425604
Alignment:
| Q |
197 |
caccaaaaataa-cttatttaagatgcatcagacactaaatataggt |
242 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
27425650 |
caccaaaaataatcttatttaaaatgcatcagacactaaatataggt |
27425604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University