View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11823_high_17 (Length: 250)
Name: NF11823_high_17
Description: NF11823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11823_high_17 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 52 - 250
Target Start/End: Complemental strand, 27184859 - 27184661
Alignment:
| Q |
52 |
tcatcaaaatcttctttaataattttccaagtattcgaagtgaagttgtctctacaacaatctttcatcctttctctcaacaaacaaatcttacattatg |
151 |
Q |
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| T |
27184859 |
tcatcaaaatcttctttaatcattttccgagtattcgaagtgaagttgtctctacaacaatctttcatcctttctctcaacaaacaaatcttacattatg |
27184760 |
T |
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| Q |
152 |
tagttggtgtaattttcactccattttaaactttgggaagatagataaataactaaatactaatcctaaaaagagaactatatgtagttagatgacagt |
250 |
Q |
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| T |
27184759 |
tagttggtgtaattttcactccattttaaactttgggaagatagataaataactaaatactaatcctaaaaagagaactatatgtagttagatgacagt |
27184661 |
T |
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Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 52 - 147
Target Start/End: Complemental strand, 28068873 - 28068778
Alignment:
| Q |
52 |
tcatcaaaatcttctttaataattttccaagtattcgaagtgaagttgtctctacaacaatctttcatcctttctctcaacaaacaaatcttacat |
147 |
Q |
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|||||||||| ||||||||| |||||||||||| ||||||||||| |||||||||||||||| ||||||| |||||| |||| |||||||||| |
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| T |
28068873 |
tcatcaaaatattctttaatccttttccaagtatataaagtgaagttgcctctacaacaatctttaatcctttttctcaaaaaaccaatcttacat |
28068778 |
T |
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