View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11823_high_18 (Length: 238)
Name: NF11823_high_18
Description: NF11823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11823_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 27184627 - 27184392
Alignment:
| Q |
1 |
agtaatcaacccaaaatcatcaaataattccatgaatcagtcttaatctaatgaacattagagaatataaaatagatttacctgttttatatatttcatt |
100 |
Q |
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| T |
27184627 |
agtaatcaacccaaaatcatcaaataattccatgaatcagtcttaatctaatgaaaattagagaatataaaatagatttacctgttttatatatttcatt |
27184528 |
T |
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| Q |
101 |
taa------------caaattgttttctaagcatacaaagacagaggggnnnnnnnttcattagtaatacacaaagacaagtgagcaggtaagtaaagca |
188 |
Q |
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| T |
27184527 |
taatacttcatttaacaaattgttttctaagcatacaaagacagagaggaaaaaaattcattagtaatacacaaagacaagtgagcaggtaagtaaagca |
27184428 |
T |
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| Q |
189 |
aaaatcagtctattatgtcatagaaagtactgcatc |
224 |
Q |
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| T |
27184427 |
aaaatcagtctaatatgtcatagaaagtactgcatc |
27184392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 27229436 - 27229478
Alignment:
| Q |
16 |
atcatcaaataattccatgaatcagtcttaatctaatgaacat |
58 |
Q |
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| T |
27229436 |
atcaccaaataattccatgtatcagtcttaatctattgaacat |
27229478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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