View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11823_high_2 (Length: 599)

Name: NF11823_high_2
Description: NF11823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11823_high_2
NF11823_high_2
[»] chr7 (28 HSPs)
chr7 (16-429)||(21110953-21111366)
chr7 (16-363)||(18658141-18658488)
chr7 (16-355)||(21129987-21130326)
chr7 (486-599)||(47202401-47202514)
chr7 (496-599)||(3304898-3305001)
chr7 (501-599)||(42925780-42925878)
chr7 (16-90)||(21123124-21123198)
chr7 (486-599)||(24042327-24042439)
chr7 (489-599)||(31642951-31643061)
chr7 (501-599)||(3936030-3936128)
chr7 (486-599)||(28230607-28230718)
chr7 (18-121)||(21108498-21108601)
chr7 (545-599)||(8154865-8154919)
chr7 (518-599)||(43737063-43737144)
chr7 (18-121)||(21098879-21098982)
chr7 (507-599)||(28346076-28346167)
chr7 (486-599)||(36468675-36468786)
chr7 (501-590)||(42877193-42877282)
chr7 (500-599)||(33574173-33574277)
chr7 (500-595)||(28349227-28349322)
chr7 (542-599)||(9151777-9151834)
chr7 (486-582)||(6467603-6467698)
chr7 (512-599)||(19225737-19225825)
chr7 (555-599)||(36408347-36408391)
chr7 (500-599)||(36629125-36629225)
chr7 (512-599)||(37518434-37518521)
chr7 (486-530)||(47203105-47203149)
chr7 (486-530)||(31643665-31643709)
[»] chr2 (19 HSPs)
chr2 (179-427)||(4329251-4329499)
chr2 (500-599)||(36949079-36949178)
chr2 (500-599)||(25217924-25218023)
chr2 (512-599)||(44465862-44465949)
chr2 (518-599)||(39447101-39447182)
chr2 (504-599)||(15995248-15995343)
chr2 (501-599)||(33452577-33452675)
chr2 (501-599)||(45153925-45154023)
chr2 (501-599)||(32188003-32188102)
chr2 (501-599)||(17474933-17475033)
chr2 (486-599)||(5507323-5507436)
chr2 (504-584)||(34517026-34517106)
chr2 (486-561)||(25715270-25715345)
chr2 (561-599)||(41203320-41203358)
chr2 (555-599)||(41510562-41510606)
chr2 (500-599)||(9847559-9847658)
chr2 (528-568)||(33366887-33366927)
chr2 (571-599)||(36874977-36875005)
chr2 (571-599)||(41855033-41855061)
[»] chr4 (27 HSPs)
chr4 (16-355)||(39132410-39132749)
chr4 (500-599)||(49396937-49397036)
chr4 (486-599)||(23523821-23523934)
chr4 (486-599)||(32441726-32441839)
chr4 (486-599)||(55052758-55052870)
chr4 (500-599)||(25539087-25539186)
chr4 (486-599)||(6228950-6229063)
chr4 (499-599)||(38536098-38536198)
chr4 (501-599)||(29822550-29822647)
chr4 (500-599)||(6003812-6003911)
chr4 (486-568)||(34972789-34972871)
chr4 (486-599)||(3703389-3703502)
chr4 (501-593)||(19835450-19835542)
chr4 (512-599)||(25491534-25491621)
chr4 (512-599)||(54631602-54631689)
chr4 (486-564)||(41413249-41413327)
chr4 (486-599)||(50392548-50392662)
chr4 (512-599)||(53894130-53894217)
chr4 (501-599)||(17933276-17933374)
chr4 (521-599)||(48319204-48319281)
chr4 (501-599)||(7931591-7931686)
chr4 (512-599)||(40703604-40703692)
chr4 (500-599)||(25752583-25752685)
chr4 (526-591)||(38416520-38416585)
chr4 (500-566)||(42660430-42660496)
chr4 (566-599)||(8106387-8106420)
chr4 (486-530)||(27631864-27631908)
[»] chr8 (18 HSPs)
chr8 (486-599)||(21004297-21004410)
chr8 (501-599)||(3094603-3094701)
chr8 (486-599)||(7971136-7971249)
chr8 (506-599)||(16310526-16310619)
chr8 (514-599)||(31520031-31520116)
chr8 (486-599)||(37248466-37248578)
chr8 (486-599)||(41530576-41530689)
chr8 (501-599)||(8885592-8885690)
chr8 (500-599)||(44106144-44106243)
chr8 (523-599)||(27928080-27928156)
chr8 (515-599)||(28916719-28916803)
chr8 (512-599)||(42281033-42281120)
chr8 (501-599)||(36404293-36404391)
chr8 (501-599)||(9073426-9073524)
chr8 (561-599)||(35676677-35676715)
chr8 (486-530)||(31519383-31519427)
chr8 (495-554)||(40994735-40994794)
chr8 (559-599)||(34853309-34853349)
[»] chr1 (28 HSPs)
chr1 (486-599)||(23442645-23442758)
chr1 (486-599)||(18583683-18583796)
chr1 (500-599)||(34162860-34162960)
chr1 (486-599)||(33611549-33611662)
chr1 (486-597)||(17000287-17000396)
chr1 (486-568)||(32542313-32542395)
chr1 (504-599)||(41584809-41584904)
chr1 (500-599)||(49786190-49786289)
chr1 (486-568)||(24471474-24471556)
chr1 (486-568)||(30829625-30829707)
chr1 (501-599)||(32817750-32817848)
chr1 (486-599)||(27794762-27794875)
chr1 (512-599)||(42545901-42545987)
chr1 (500-590)||(43319344-43319434)
chr1 (504-599)||(6223877-6223972)
chr1 (512-599)||(15069981-15070068)
chr1 (501-599)||(40908073-40908171)
chr1 (542-599)||(44573235-44573292)
chr1 (512-599)||(40650814-40650902)
chr1 (555-599)||(45046989-45047033)
chr1 (512-599)||(45568015-45568103)
chr1 (542-599)||(7011172-7011229)
chr1 (501-599)||(52744956-52745054)
chr1 (500-585)||(38950202-38950285)
chr1 (501-576)||(38885161-38885236)
chr1 (561-599)||(26723622-26723660)
chr1 (486-530)||(32542832-32542876)
chr1 (486-530)||(49786900-49786944)
[»] chr5 (28 HSPs)
chr5 (501-599)||(6156615-6156713)
chr5 (501-599)||(15799109-15799207)
chr5 (486-599)||(4064859-4064971)
chr5 (486-599)||(26318987-26319100)
chr5 (500-599)||(33487493-33487592)
chr5 (486-599)||(26190437-26190550)
chr5 (486-599)||(37095053-37095165)
chr5 (486-599)||(12465245-12465355)
chr5 (501-599)||(31929245-31929342)
chr5 (486-599)||(27212577-27212690)
chr5 (512-599)||(40620129-40620216)
chr5 (500-599)||(25746910-25747008)
chr5 (512-599)||(28083517-28083604)
chr5 (490-568)||(34440617-34440695)
chr5 (504-599)||(15957637-15957731)
chr5 (501-599)||(38692921-38693020)
chr5 (502-599)||(20891497-20891595)
chr5 (513-599)||(39524672-39524758)
chr5 (500-599)||(36359725-36359824)
chr5 (504-595)||(38871558-38871649)
chr5 (561-599)||(32842111-32842149)
chr5 (542-599)||(38372234-38372291)
chr5 (501-599)||(37183921-37184019)
chr5 (486-551)||(1350451-1350516)
chr5 (500-584)||(24203834-24203918)
chr5 (512-590)||(28108277-28108354)
chr5 (496-530)||(38030765-38030799)
chr5 (487-552)||(38640590-38640655)
[»] chr3 (40 HSPs)
chr3 (486-599)||(2358762-2358876)
chr3 (504-599)||(47301944-47302039)
chr3 (501-599)||(3902945-3903043)
chr3 (486-599)||(3937295-3937408)
chr3 (486-599)||(48303898-48304011)
chr3 (500-599)||(50716173-50716272)
chr3 (500-599)||(50796575-50796674)
chr3 (500-595)||(42936590-42936685)
chr3 (500-599)||(51258324-51258422)
chr3 (504-599)||(501280-501375)
chr3 (504-599)||(28872928-28873023)
chr3 (512-599)||(34821535-34821622)
chr3 (500-599)||(49096366-49096464)
chr3 (486-568)||(52777148-52777230)
chr3 (486-569)||(43473119-43473201)
chr3 (512-599)||(47123039-47123126)
chr3 (512-599)||(47130405-47130492)
chr3 (512-599)||(47740071-47740158)
chr3 (21-121)||(26675261-26675361)
chr3 (501-599)||(35141999-35142094)
chr3 (60-123)||(26713623-26713686)
chr3 (60-123)||(26736859-26736922)
chr3 (60-123)||(26743870-26743933)
chr3 (57-123)||(26750795-26750861)
chr3 (500-595)||(33701457-33701554)
chr3 (501-599)||(38977887-38977985)
chr3 (501-599)||(51540753-51540853)
chr3 (500-595)||(33700678-33700774)
chr3 (486-530)||(2358110-2358154)
chr3 (486-530)||(3938805-3938849)
chr3 (564-599)||(42936685-42936720)
chr3 (512-583)||(45244322-45244393)
chr3 (513-599)||(46622923-46623010)
chr3 (486-530)||(8657743-8657787)
chr3 (504-552)||(8735096-8735144)
chr3 (504-552)||(9087337-9087385)
chr3 (504-599)||(30721948-30722044)
chr3 (567-599)||(34821482-34821514)
chr3 (560-592)||(39149791-39149823)
chr3 (571-599)||(52777223-52777251)
[»] chr6 (14 HSPs)
chr6 (500-599)||(33413485-33413584)
chr6 (500-599)||(5699479-5699578)
chr6 (504-599)||(32035038-32035133)
chr6 (486-578)||(5638786-5638878)
chr6 (500-599)||(23406717-23406816)
chr6 (501-599)||(2813363-2813463)
chr6 (501-599)||(7412750-7412848)
chr6 (515-599)||(17264346-17264430)
chr6 (500-599)||(4508441-4508540)
chr6 (542-599)||(1945668-1945725)
chr6 (486-599)||(3717422-3717534)
chr6 (504-599)||(24604501-24604597)
chr6 (501-599)||(14587699-14587797)
chr6 (561-599)||(9905100-9905138)
[»] scaffold0137 (1 HSPs)
scaffold0137 (501-599)||(9636-9734)
[»] scaffold0182 (1 HSPs)
scaffold0182 (512-599)||(23056-23142)
[»] scaffold0027 (1 HSPs)
scaffold0027 (512-599)||(142102-142188)
[»] scaffold0010 (1 HSPs)
scaffold0010 (512-583)||(140541-140612)
[»] scaffold0508 (1 HSPs)
scaffold0508 (486-599)||(3534-3648)


Alignment Details
Target: chr7 (Bit Score: 366; Significance: 0; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 16 - 429
Target Start/End: Complemental strand, 21111366 - 21110953
Alignment:
Q  16 gatatatggcccctgaatggatttccaatttaccaataacatctaaagtggatgtttatagttatggggttgtattgttggagatgataaccggaaagag 115  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  21111366 gatatatggcccctgaatggatttccaattcaccaataacatctaaagtggatgtttatagttatggggttgttttgttggatatgataaccggaaagag 21111267  T
Q  116 tccaacaatgatgaatatagaaggagttgatggagaagttgcatacaatggaaggttgataacttgggtaagagagaaaaagaggagtagatgttgggtg 215  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  21111266 tccaacaatgatgaatatggaaggagttgatggagaagtggcatacaatggaaggttgataaattgggtaagagagaaaaagaggagtagatgttgggtg 21111167  T
Q  216 gaagaaattttggatcctaatattggaactaattgtgattcaagtaagatggaaattttggcgaaagttgctttggagtgtgaagaggtagataaaaata 315  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  21111166 gaagaaattatggatcctaaaattggaactaattgtgattcaagtaagatggaaattttggcgaaagttgctttggagtgtgtagaggtagataaaaata 21111067  T
Q  316 ttaggcctactatgagtcaagtggttgagaagcttcaaagaaatgaaatagattcctaggtctcttaatgagtgatgcatgatgttaaattagattcctt 415  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  21111066 ttaggcctactatgagtcaggtggttgagaagcttcaaagaaatgaaatagattcctaggtctcttaatgagtgatgcatgatgttgaattagattcctt 21110967  T
Q  416 cgtttgcaaataat 429  Q
    ||| ||||||||||    
T  21110966 cgtgtgcaaataat 21110953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 16 - 363
Target Start/End: Complemental strand, 18658488 - 18658141
Alignment:
Q  16 gatatatggcccctgaatggatttccaatttaccaataacatctaaagtggatgtttatagttatggggttgtattgttggagatgataaccggaaagag 115  Q
    |||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  18658488 gatatatggcccctgagtggattttcaatttgccaataacatctaaagtggatgtttatggttatggggttgtattgttggagatgataactggaaagag 18658389  T
Q  116 tccaacaatgatgaatatagaaggagttgatggagaagttgcatacaatggaaggttgataacttgggtaagagagaaaaagaggagtagatgttgggtg 215  Q
    |||||| ||||||||||||||||  |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||     
T  18658388 tccaacgatgatgaatatagaagacgttgatggagaaatggcatacaatggaaggttgataacttgggtaagagagaaaaagaggagtacatgttgggtt 18658289  T
Q  216 gaagaaattttggatcctaatattggaactaattgtgattcaagtaagatggaaattttggcgaaagttgctttggagtgtgaagaggtagataaaaata 315  Q
    ||||||||| ||||||||   || || || |||||||||| || |||||||||| ||||||| |||||||||||||| |||| ||||| ||||| | |||    
T  18658288 gaagaaattatggatcctgcaatggggaccaattgtgatttaaataagatggaagttttggctaaagttgctttggattgtgtagaggaagatagagata 18658189  T
Q  316 ttaggcctactatgagtcaagtggttgagaagcttcaaagaaatgaaa 363  Q
    ||||||||| |||||| || |||||||||||||||||||| |||||||    
T  18658188 ttaggcctaatatgagccaggtggttgagaagcttcaaagcaatgaaa 18658141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 355
Target Start/End: Complemental strand, 21130326 - 21129987
Alignment:
Q  16 gatatatggcccctgaatggatttccaatttaccaataacatctaaagtggatgtttatagttatggggttgtattgttggagatgataaccggaaagag 115  Q
    |||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||  |||| ||||||||||||||||||||    
T  21130326 gatatatggcacctgagtggattttcaatttaccaataacatctaaagtggatgtttatagttacggggttgtcgtgttagagatgataaccggaaagag 21130227  T
Q  116 tccaacaatgatgaatatagaaggagttgatggagaagttgcatacaatggaaggttgataacttgggtaagagagaaaaagaggagtagatgttgggtg 215  Q
    ||||||||||||||||||||||||||||||||||||||   |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||     
T  21130226 tccaacaatgatgaatatagaaggagttgatggagaagggacatataatggaaggttgataacttgggtaagagagaaaaagaggagtacatgttgggtt 21130127  T
Q  216 gaagaaattttggatcctaatattggaactaattgtgattcaagtaagatggaaattttggcgaaagttgctttggagtgtgaagaggtagataaaaata 315  Q
    ||| |||| |||||||||   || || | ||||| ||||| ||||||||||||||||||||  | |||||||||||| ||||  || | |||||   |||    
T  21130126 gaacaaatcttggatcctgcaatagggaataattatgatttaagtaagatggaaattttggttagagttgctttggattgtgttgaagaagatagggata 21130027  T
Q  316 ttaggcctactatgagtcaagtggttgagaagcttcaaag 355  Q
    ||||||||||||||||||| || ||||||| |||||||||    
T  21130026 ttaggcctactatgagtcaggttgttgagatgcttcaaag 21129987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 486 - 599
Target Start/End: Original strand, 47202401 - 47202514
Alignment:
Q  486 aaatgccctggagatttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatcc 585  Q
    ||||||||| ||| ||||||||||||||||||||||||| ||||||| | |||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  47202401 aaatgcccttgaggtttccggatttcataatccggaatggtgttttcttttgttatagggtgaaaaatggagttacggatttttccagattttgtaatcc 47202500  T
Q  586 ggaaacttcaaaaa 599  Q
    | ||||||||||||    
T  47202501 gaaaacttcaaaaa 47202514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 496 - 599
Target Start/End: Complemental strand, 3305001 - 3304898
Alignment:
Q  496 gagatttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttca 595  Q
    |||||||||||||||||||||  |||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  3305001 gagatttccggatttcataatttggaatggtgttttcctttgttatagggtgaaaaatggagttacggatttttccggattttgtaatccagaaacttca 3304902  T
Q  596 aaaa 599  Q
    ||||    
T  3304901 aaaa 3304898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 501 - 599
Target Start/End: Complemental strand, 42925878 - 42925780
Alignment:
Q  501 ttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  42925878 ttccggatttcataatccggaatggtgttttcctttgttatagggtgaaaaatggagttacgggtttttcctgattttgtaatccggaaacttcaaaaa 42925780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 21123198 - 21123124
Alignment:
Q  16 gatatatggcccctgaatggatttccaatttaccaataacatctaaagtggatgtttatagttatggggttgtat 90  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21123198 gatatatggcccctgaatggatttccaatttaccaataacatctaaagtggatgtttatagttatggggttgtat 21123124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 486 - 599
Target Start/End: Complemental strand, 24042439 - 24042327
Alignment:
Q  486 aaatgccctggagatttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatcc 585  Q
    ||||||||| ||| |||| | |||||||||| ||||||| ||||||||| || | ||||||||||||||||||||||| |||||||||||||||||||||    
T  24042439 aaatgcccttgag-tttctgaatttcataattcggaatggtgttttcctttgatatagggtgaaaaatggagttacgggtttttccggattttgtaatcc 24042341  T
Q  586 ggaaacttcaaaaa 599  Q
    ||||||||||||||    
T  24042340 ggaaacttcaaaaa 24042327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 489 - 599
Target Start/End: Original strand, 31642951 - 31643061
Alignment:
Q  489 tgccctggagatttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccgga 588  Q
    |||||| ||| |||||||||||||||||| |||||| ||||||| | |||| |||||||||||||||||||||||||||||| |||| |||||||  |||    
T  31642951 tgcccttgaggtttccggatttcataatctggaatggtgttttcgtttgttatagggtgaaaaatggagttacggatttttctggatcttgtaatttgga 31643050  T
Q  589 aacttcaaaaa 599  Q
    |||||||||||    
T  31643051 aacttcaaaaa 31643061  T

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Target: chr7; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 501 - 599
Target Start/End: Original strand, 3936030 - 3936128
Alignment:
Q  501 ttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||||||||  ||||||||||||||||||||| | ||||  || ||||||||  |||| |||| |||||||||||||||||||||||||||||||||||    
T  3936030 ttccggattatataatccggaatgatgttttcttttgttaaagagtgaaaaaatgagtaacgggtttttccggattttgtaatccggaaacttcaaaaa 3936128  T

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Target: chr7; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 486 - 599
Target Start/End: Complemental strand, 28230718 - 28230607
Alignment:
Q  486 aaatgccctggagatttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatcc 585  Q
    ||||||||| ||| |||| |||||| ||||||| ||||| ||||||| | ||||  ||||| ||||||| ||| ||||||||||||||||||||||||||    
T  28230718 aaatgcccttgagttttc-ggattttataatccagaatggtgttttcttttgttaaagggtaaaaaatg-agtaacggatttttccggattttgtaatcc 28230621  T
Q  586 ggaaacttcaaaaa 599  Q
    ||||||||||||||    
T  28230620 ggaaacttcaaaaa 28230607  T

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Target: chr7; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 21108498 - 21108601
Alignment:
Q  18 tatatggcccctgaatggatttccaatttaccaataacatctaaagtggatgtttatagttatggggttgtattgttggagatgataaccggaaagagtc 117  Q
    |||||||| ||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||  | ||  | ||||| |||||||| ||||| ||||    
T  21108498 tatatggcacctgaatggattttcaatttgccaataacatctaaggtggatgtttatagttatggaatagttgttttggaaatgataacaggaaaaagtc 21108597  T
Q  118 caac 121  Q
    ||||    
T  21108598 caac 21108601  T

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Target: chr7; HSP #13
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 545 - 599
Target Start/End: Original strand, 8154865 - 8154919
Alignment:
Q  545 gtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  8154865 gtgaaaaatgaagttacggatttttccggattttgtaatccggaaacttcaaaaa 8154919  T

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Target: chr7; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 518 - 599
Target Start/End: Original strand, 43737063 - 43737144
Alignment:
Q  518 cggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    ||||||| ||||||| | ||||  |||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||    
T  43737063 cggaatggtgttttcttttgttaaagggtgaaaaaatgagtaacggatttttccggattttgtaatccggaaacttcaaaaa 43737144  T

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Target: chr7; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 21098879 - 21098982
Alignment:
Q  18 tatatggcccctgaatggatttccaatttaccaataacatctaaagtggatgtttatagttatggggttgtattgttggagatgataaccggaaagagtc 117  Q
    ||||||||||| |||||||||| |||||| ||||||||||||||||| ||||||||||| |||||  | ||  | ||||| |||||||| ||||| ||||    
T  21098879 tatatggccccagaatggattttcaatttgccaataacatctaaagtagatgtttatagctatggaatagttgtattggaaatgataacaggaaaaagtc 21098978  T
Q  118 caac 121  Q
    ||||    
T  21098979 caac 21098982  T

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Target: chr7; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 507 - 599
Target Start/End: Original strand, 28346076 - 28346167
Alignment:
Q  507 atttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    ||||||||||| |||||||||||||||| ||||  || |  ||||||| |||||||||| |||||| |||||||||||| |||||||||||||    
T  28346076 atttcataatctggaatgatgttttcctttgttaaagagaaaaaaatg-agttacggatgtttccgaattttgtaatccagaaacttcaaaaa 28346167  T

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Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 486 - 599
Target Start/End: Complemental strand, 36468786 - 36468675
Alignment:
Q  486 aaatgccctggagatttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatcc 585  Q
    ||||||||| || ||||||  |||| ||||| ||||||||||||||| | ||||  ||| |||||||  |||| ||||||||||||||||||||||||      
T  36468786 aaatgcccttga-atttccaaattttataattcggaatgatgttttcttttgttaaagg-tgaaaaaatgagtaacggatttttccggattttgtaatat 36468689  T
Q  586 ggaaacttcaaaaa 599  Q
    ||||||||||||||    
T  36468688 ggaaacttcaaaaa 36468675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 501 - 590
Target Start/End: Complemental strand, 42877282 - 42877193
Alignment:
Q  501 ttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaa 590  Q
    |||||||||  ||||||||||||||||||||| | ||||  |||||||||||  |||| |||  |||||||||||||||||||| |||||    
T  42877282 ttccggattatataatccggaatgatgttttcttttgttaaagggtgaaaaaatgagtaacgtgtttttccggattttgtaatcgggaaa 42877193  T

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Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 500 - 599
Target Start/End: Complemental strand, 33574277 - 33574173
Alignment:
Q  500 tttccggatttcataatccggaatgatgttttcctgtgttgt-----agggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttc 594  Q
    ||||||| ||||||||||||| ||| ||||||||| |||| |     || |||||||||| ||||| ||||||||  ||||||||||||||||||||||     
T  33574277 tttccgggtttcataatccgggatggtgttttcctttgttttgttatagagtgaaaaatgaagttatggatttttttggattttgtaatccggaaacttt 33574178  T
Q  595 aaaaa 599  Q
    |||||    
T  33574177 aaaaa 33574173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 500 - 595
Target Start/End: Complemental strand, 28349322 - 28349227
Alignment:
Q  500 tttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttca 595  Q
    |||||||||||||||||| | |||| |||||| || ||||  | |||||||||  |||||||| ||||||| | ||||||||||||| ||||||||    
T  28349322 tttccggatttcataatcggaaatggtgtttttctttgttaaatggtgaaaaaatgagttacgaatttttctgaattttgtaatccgaaaacttca 28349227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 542 - 599
Target Start/End: Original strand, 9151777 - 9151834
Alignment:
Q  542 agggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||||||||||  |||| || | |||||||||||||||||||||||||||||||||||    
T  9151777 agggtgaaaaaatgagtaacaggtttttccggattttgtaatccggaaacttcaaaaa 9151834  T

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Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 486 - 582
Target Start/End: Original strand, 6467603 - 6467698
Alignment:
Q  486 aaatgccctggagatttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaa 582  Q
    ||||||||| ||  ||||||||||| || || ||||||| ||||||||| ||||  | |||||||||| |||||||||||||||||| ||| |||||    
T  6467603 aaatgcccttgaagtttccggattttatgattcggaatggtgttttcctttgttaaatggtgaaaaat-gagttacggatttttccgaattatgtaa 6467698  T

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Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 512 - 599
Target Start/End: Complemental strand, 19225825 - 19225737
Alignment:
Q  512 ataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggattttt-ccggattttgtaatccggaaacttcaaaaa 599  Q
    ||||| || |||||||||||| | ||||  |||||||||||  |||| |||||||||| ||||||||||||||||  ||||||||||||    
T  19225825 ataattcgaaatgatgttttcttttgttaaagggtgaaaaaatgagtaacggattttttccggattttgtaatccaaaaacttcaaaaa 19225737  T

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Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 555 - 599
Target Start/End: Original strand, 36408347 - 36408391
Alignment:
Q  555 gagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||| |||||||||||||||||||||||||| |||||||||||||    
T  36408347 gagtaacggatttttccggattttgtaatccagaaacttcaaaaa 36408391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 500 - 599
Target Start/End: Original strand, 36629125 - 36629225
Alignment:
Q  500 tttccggatttcataatccggaatgatgttttcctgt-gttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaa 598  Q
    ||||||||||| |||||  |||||| |||||| || | |||  |||||||||||  |||| ||||||||||||||||||||||||| || ||||| ||||    
T  36629125 tttccggattttataatatggaatggtgtttttcttttgttagagggtgaaaaaatgagtaacggatttttccggattttgtaatctggtaacttaaaaa 36629224  T
Q  599 a 599  Q
    |    
T  36629225 a 36629225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 512 - 599
Target Start/End: Complemental strand, 37518521 - 37518434
Alignment:
Q  512 ataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||||||  |||||||||||| | | ||  |||||||||||   ||| ||||||||||||||||||| |||||| |||||||||||||    
T  37518521 ataatccaaaatgatgttttcttttattaaagggtgaaaaaataagtaacggatttttccggattttataatccagaaacttcaaaaa 37518434  T

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Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 486 - 530
Target Start/End: Complemental strand, 47203149 - 47203105
Alignment:
Q  486 aaatgccctggagatttccggatttcataatccggaatgatgttt 530  Q
    ||||||||| ||| |||||||||||||||||||||||| ||||||    
T  47203149 aaatgcccttgaggtttccggatttcataatccggaatcatgttt 47203105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 486 - 530
Target Start/End: Complemental strand, 31643709 - 31643665
Alignment:
Q  486 aaatgccctggagatttccggatttcataatccggaatgatgttt 530  Q
    ||||||||| ||| ||||||| |||||||||||||||| ||||||    
T  31643709 aaatgcccttgaggtttccggctttcataatccggaatcatgttt 31643665  T

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Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 179 - 427
Target Start/End: Complemental strand, 4329499 - 4329251
Alignment:
Q  179 ttgggtaagagagaaaaagaggagtagatgttgggtggaagaaattttggatcctaatattggaactaattgtgattcaagtaagatggaaattttggcg 278  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  4329499 ttgggtaagagagaaaaagaggagtagatgttgggtggaagaaattatggatcctaatattggaactaattgtgattcaagtaagatggaaattttggcc 4329400  T
Q  279 aaagttgctttggagtgtgaagaggtagataaaaatattaggcctactatgagtcaagtggttgagaagcttcaaagaaatgaaatagattcctaggtct 378  Q
    |||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4329399 aaagttgctttgaagtgtgtagaggtagataaaaatattaggcctactatgagtcaggtggttgagaagcttcaaagaaatgaaatagattcctaggtct 4329300  T
Q  379 cttaatgagtgatgcatgatgttaaattagattccttcgtttgcaaata 427  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  4329299 cttaatgagtgatacatgatgttaaattagattccttcgtttgcaaata 4329251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 500 - 599
Target Start/End: Complemental strand, 36949178 - 36949079
Alignment:
Q  500 tttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    ||||| ||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  36949178 tttccagatttcataatccggaatggtgttttcctttgttatagggtgaaaaatggagttacggatttttccggattttgtaatctgcaaacttcaaaaa 36949079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 500 - 599
Target Start/End: Complemental strand, 25218023 - 25217924
Alignment:
Q  500 tttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||| |||||| |||||||| |||||||||||| | ||||  |||||||||||  |||| |||||||||| |||||||||||||||||||||||||||||    
T  25218023 tttctggattttataatccgcaatgatgttttcttttgttaaagggtgaaaaaatgagtaacggattttttcggattttgtaatccggaaacttcaaaaa 25217924  T

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Target: chr2; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 512 - 599
Target Start/End: Complemental strand, 44465949 - 44465862
Alignment:
Q  512 ataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    ||||||| ||||||||||||| | ||||  |||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||    
T  44465949 ataatccagaatgatgttttcttttgttaaagggtgaaaaaatgagtaacggatttttccggattttgtaatccggaaacttcaaaaa 44465862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 518 - 599
Target Start/End: Original strand, 39447101 - 39447182
Alignment:
Q  518 cggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    ||||||||||||||| | ||||  |||||||||||  |||| ||||||||||||||||||||||||||| ||||||||||||    
T  39447101 cggaatgatgttttcttttgttaaagggtgaaaaaatgagtaacggatttttccggattttgtaatccgaaaacttcaaaaa 39447182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 504 - 599
Target Start/End: Complemental strand, 15995343 - 15995248
Alignment:
Q  504 cggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    ||||||| ||||||||||||| ||||||| | ||||  |||||||||||   ||| |||| |||||||||||||||||||| ||||||||||||||    
T  15995343 cggattttataatccggaatggtgttttcttttgttaaagggtgaaaaaattagtaacgggtttttccggattttgtaatcgggaaacttcaaaaa 15995248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 501 - 599
Target Start/End: Complemental strand, 33452675 - 33452577
Alignment:
Q  501 ttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||||||||  |||||||| |||||||||||| | ||||  |||||| ||||  |||| ||||||||||| |||||||||||| |||||||||||||||    
T  33452675 ttccggattatataatccgaaatgatgttttcttttgttaaagggtggaaaaatgagtaacggatttttctggattttgtaattcggaaacttcaaaaa 33452577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 501 - 599
Target Start/End: Complemental strand, 45154023 - 45153925
Alignment:
Q  501 ttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||||||||  ||||||||||||||||||||| | ||||  |||||||||||  |||| |||| |||||| | ||||||||||| ||||||||||||||    
T  45154023 ttccggattatataatccggaatgatgttttcttttgttaaagggtgaaaaaatgagtaacgggtttttctgaattttgtaatctggaaacttcaaaaa 45153925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 501 - 599
Target Start/End: Complemental strand, 32188102 - 32188003
Alignment:
Q  501 ttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatg-gagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||||||||  ||||||||||||||||||||| | ||||  |||||||||||   |||| |||| |||||| ||||||||||||| ||||||||||||||    
T  32188102 ttccggattgtataatccggaatgatgttttcttttgttaaagggtgaaaaaaatgagtaacgggtttttctggattttgtaatctggaaacttcaaaaa 32188003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 501 - 599
Target Start/End: Complemental strand, 17475033 - 17474933
Alignment:
Q  501 ttccggatttcataatccgg--aatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaa 598  Q
    |||||||||  |||||||||  ||| |||||||| | ||||  | |||||||||  |||| |||||||||||||||||||||||||||||||||| ||||    
T  17475033 ttccggattatataatccggggaataatgttttcttttgttaaaaggtgaaaaaatgagtaacggatttttccggattttgtaatccggaaactttaaaa 17474934  T
Q  599 a 599  Q
    |    
T  17474933 a 17474933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 486 - 599
Target Start/End: Original strand, 5507323 - 5507436
Alignment:
Q  486 aaatgccctggagatttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatcc 585  Q
    ||||||||| ||  ||| ||| |||||||||||| | |  ||||||||| |||| || |||||||||  ||||||| ||||||| || ||||||||||||    
T  5507323 aaatgcccttgaagttttcgggtttcataatccgaactagtgttttcctttgttatatggtgaaaaaatgagttacagattttttcgaattttgtaatcc 5507422  T
Q  586 ggaaacttcaaaaa 599  Q
      ||||||||||||    
T  5507423 aaaaacttcaaaaa 5507436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 504 - 584
Target Start/End: Original strand, 34517026 - 34517106
Alignment:
Q  504 cggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatc 584  Q
    ||||||||||| |||| | || ||||||||| |||| || |||||||||  |||||||| |||||| ||||||||||||||    
T  34517026 cggatttcatattccgaactggtgttttcctttgttatacggtgaaaaaatgagttacgaattttttcggattttgtaatc 34517106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 486 - 561
Target Start/End: Original strand, 25715270 - 25715345
Alignment:
Q  486 aaatgccctggagatttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttac 561  Q
    ||||||||| ||  ||||||||||| ||||||||||||| ||||||||| ||||  |||||||||||  |||||||    
T  25715270 aaatgcccttgaagtttccggattttataatccggaatggtgttttcctttgttaaagggtgaaaaaatgagttac 25715345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 561 - 599
Target Start/End: Complemental strand, 41203358 - 41203320
Alignment:
Q  561 cggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  41203358 cggatttttccggattttgtaatccggaaactacaaaaa 41203320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 555 - 599
Target Start/End: Complemental strand, 41510606 - 41510562
Alignment:
Q  555 gagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||| |||||||||||| ||||| |||||||||||||||||||||    
T  41510606 gagtaacggatttttccagatttcgtaatccggaaacttcaaaaa 41510562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 500 - 599
Target Start/End: Complemental strand, 9847658 - 9847559
Alignment:
Q  500 tttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    ||||||||||| |||||| ||||||   |||| || ||||  || ||||||||  ||||||| ||||||||| |||||||||||||| |||  |||||||    
T  9847658 tttccggattttataatctggaatggcatttttctttgttaaagagtgaaaaaatgagttactgatttttccagattttgtaatccgaaaatctcaaaaa 9847559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 568
Target Start/End: Original strand, 33366887 - 33366927
Alignment:
Q  528 ttttcctgtgttgtagggtgaaaaatggagttacggatttt 568  Q
    ||||||| |||| ||||||||||||||||||| ||||||||    
T  33366887 ttttcctttgttatagggtgaaaaatggagttgcggatttt 33366927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 571 - 599
Target Start/End: Original strand, 36874977 - 36875005
Alignment:
Q  571 cggattttgtaatccggaaacttcaaaaa 599  Q
    |||||||||||||||||||||||||||||    
T  36874977 cggattttgtaatccggaaacttcaaaaa 36875005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 571 - 599
Target Start/End: Complemental strand, 41855061 - 41855033
Alignment:
Q  571 cggattttgtaatccggaaacttcaaaaa 599  Q
    |||||||||||||||||||||||||||||    
T  41855061 cggattttgtaatccggaaacttcaaaaa 41855033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 16 - 355
Target Start/End: Original strand, 39132410 - 39132749
Alignment:
Q  16 gatatatggcccctgaatggatttccaatttaccaataacatctaaagtggatgtttatagttatggggttgtattgttggagatgataaccggaaagag 115  Q
    |||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||| ||    
T  39132410 gatatatggctcctgaatgggttttcaatttaccaataacatctaaagtggatgtttatagttatgggattgttttgttggagatgataactggaaaaag 39132509  T
Q  116 tccaacaatgatgaatatagaaggagttgatggagaagttgcatacaatggaaggttgataacttgggtaagagagaaaaagaggagtagatgttgggtg 215  Q
      |||||||||||||||| |||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||| ||||||  ||||||||||    
T  39132510 atcaacaatgatgaatattgaaggagttgatggagaagtggcatataatggaaggttggtaacttgggtaagagagaaaaaaaggagtgcatgttgggtg 39132609  T
Q  216 gaagaaattttggatcctaatattggaactaattgtgattcaagtaagatggaaattttggcgaaagttgctttggagtgtgaagaggtagataaaaata 315  Q
    ||||||||| ||||||||   || |  | ||||||||||| || |||||||||||||||||| ||||||||||||||||||| ||||| ||||| | |||    
T  39132610 gaagaaattatggatccttcaatagtgattaattgtgatttaattaagatggaaattttggctaaagttgctttggagtgtgtagaggaagatagagata 39132709  T
Q  316 ttaggcctactatgagtcaagtggttgagaagcttcaaag 355  Q
    ||||||||| |||||| || |||||||||| |||| ||||    
T  39132710 ttaggcctaatatgagccaggtggttgagatgcttgaaag 39132749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 500 - 599
Target Start/End: Original strand, 49396937 - 49397036
Alignment:
Q  500 tttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    ||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49396937 tttccggatttcataatccggaatgatgttttcctttattatagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 49397036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 486 - 599
Target Start/End: Original strand, 23523821 - 23523934
Alignment:
Q  486 aaatgccctggagatttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatcc 585  Q
    ||||||||| |||||||  |||||||||||| ||||||||||||||||| ||||  |||||||||||||||||||||||||||| |||||||||||||||    
T  23523821 aaatgcccttgagattttaggatttcataattcggaatgatgttttcctttgttagagggtgaaaaatggagttacggattttttcggattttgtaatcc 23523920  T
Q  586 ggaaacttcaaaaa 599  Q
    ||||||||||||||    
T  23523921 ggaaacttcaaaaa 23523934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 486 - 599
Target Start/End: Original strand, 32441726 - 32441839
Alignment:
Q  486 aaatgccctggagatttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatcc 585  Q
    |||| |||| ||| ||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||| ||||||||| ||||||||||||||    
T  32441726 aaatacccttgaggtttccggatttcataatccggaatggtgttttcctttgttatagggtgaaaaatggagttaaggatttttctggattttgtaatcc 32441825  T
Q  586 ggaaacttcaaaaa 599  Q
    ||||||||||||||    
T  32441826 ggaaacttcaaaaa 32441839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 486 - 599
Target Start/End: Complemental strand, 55052870 - 55052758
Alignment:
Q  486 aaatgccctggagatttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatcc 585  Q
    ||||||||| ||| ||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||| |||||||||||| ||||||||    
T  55052870 aaatgcccttgag-tttccggatttcataatccggaatggtgttttcctttgttatagggtgaaaaatggagttacgggtttttccggattatgtaatcc 55052772  T
Q  586 ggaaacttcaaaaa 599  Q
    ||||||||||||||    
T  55052771 ggaaacttcaaaaa 55052758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 500 - 599
Target Start/End: Complemental strand, 25539186 - 25539087
Alignment:
Q  500 tttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    ||||||||||||||||||||||||| ||||||||| |||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  25539186 tttccggatttcataatccggaatggtgttttcctttgttatatggtgaaaaatggagttacgggtttttccggattttgtaatccggaaacttcaaaaa 25539087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 486 - 599
Target Start/End: Complemental strand, 6229063 - 6228950
Alignment:
Q  486 aaatgccctggagatttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatcc 585  Q
    ||||| ||| ||| |||| |||||||||||||||||||| ||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||| ||    
T  6229063 aaatgtccttgaggtttcaggatttcataatccggaatggtgttttcctttgttatagggtgaaaaatggagctacggatttttccggattttgtaaccc 6228964  T
Q  586 ggaaacttcaaaaa 599  Q
    ||||||||||||||    
T  6228963 ggaaacttcaaaaa 6228950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 499 - 599
Target Start/End: Original strand, 38536098 - 38536198
Alignment:
Q  499 atttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaa 598  Q
    ||||||||||||||||||||| |||| ||||||||| |||| |||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||    
T  38536098 atttccggatttcataatccgaaatggtgttttcctttgttatagggtgaaaaatgaagttacgggtttttccggattttgtaattcggaaacttcaaaa 38536197  T
Q  599 a 599  Q
    |    
T  38536198 a 38536198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 501 - 599
Target Start/End: Original strand, 29822550 - 29822647
Alignment:
Q  501 ttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    ||||||||||||||||  |||||| ||||| ||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  29822550 ttccggatttcataatatggaatggtgttt-cctttgttatagggtgaaaaatggagttacgggtttttccggattttgtaatccggaaacttcaaaaa 29822647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 500 - 599
Target Start/End: Complemental strand, 6003911 - 6003812
Alignment:
Q  500 tttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||| |||||||||||||||||||| || |||||| |||| ||||||||||||||||||||||||||||| || ||||| |||||||||||||| |||||    
T  6003911 tttctggatttcataatccggaatggtggtttcctttgttatagggtgaaaaatggagttacggattttttcgaattttataatccggaaacttaaaaaa 6003812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 486 - 568
Target Start/End: Original strand, 34972789 - 34972871
Alignment:
Q  486 aaatgccctggagatttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttt 568  Q
    ||||||||| ||| ||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||    
T  34972789 aaatgcccttgaggtttccggatttcataatccggaatggtgttttcctttgttatagggtgaaaaatggagttacggatttt 34972871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 486 - 599
Target Start/End: Complemental strand, 3703502 - 3703389
Alignment:
Q  486 aaatgccctggagatttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatcc 585  Q
    ||||||||| ||  |||||||||||||||||||| | |  ||||||||| |||| ||||||||||||  ||||||||||||||| |||||||||||||||    
T  3703502 aaatgcccttgaagtttccggatttcataatccgaactagtgttttcctttgttatagggtgaaaaaatgagttacggattttttcggattttgtaatcc 3703403  T
Q  586 ggaaacttcaaaaa 599  Q
    | ||||||||||||    
T  3703402 gaaaacttcaaaaa 3703389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 501 - 593
Target Start/End: Original strand, 19835450 - 19835542
Alignment:
Q  501 ttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaactt 593  Q
    |||||||||  ||||||||||||||||||||| | ||||  |||||||||||  |||| |||| |||||||||||||||||||||||||||||    
T  19835450 ttccggattatataatccggaatgatgttttcttttgttaaagggtgaaaaaatgagtaacgggtttttccggattttgtaatccggaaactt 19835542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 512 - 599
Target Start/End: Complemental strand, 25491621 - 25491534
Alignment:
Q  512 ataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    ||||||||||||||||||||| | ||||  |||||||||||  |||| |||  ||||| |||||||||||||||||||||||||||||    
T  25491621 ataatccggaatgatgttttcttttgttaaagggtgaaaaaatgagtaacgagttttttcggattttgtaatccggaaacttcaaaaa 25491534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 512 - 599
Target Start/End: Complemental strand, 54631689 - 54631602
Alignment:
Q  512 ataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||||||||||||| |||||| | ||||  |||||| ||||  |||| |||| |||||||||||||||||||||||||||||||||||    
T  54631689 ataatccggaatgacgttttcttttgttaaagggtggaaaaatgagtaacgggtttttccggattttgtaatccggaaacttcaaaaa 54631602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 486 - 564
Target Start/End: Complemental strand, 41413327 - 41413249
Alignment:
Q  486 aaatgccctggagatttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacgga 564  Q
    ||||| ||| ||||||| ||||||||||||||||||||  |||||| || |||| ||||||||||||||||||||||||    
T  41413327 aaatgtccttgagattttcggatttcataatccggaatagtgtttttctttgttatagggtgaaaaatggagttacgga 41413249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 486 - 599
Target Start/End: Complemental strand, 50392662 - 50392548
Alignment:
Q  486 aaatgccctggagatttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatg-gagttacggatttttccggattttgtaatc 584  Q
    ||||||| | ||| |||||||||||  |||||||||| | ||||||||| ||||  || ||||||||   ||||||||||||||||||||||||||||||    
T  50392662 aaatgcctttgaggtttccggatttagtaatccggaacggtgttttcctttgttaaagagtgaaaaaaatgagttacggatttttccggattttgtaatc 50392563  T
Q  585 cggaaacttcaaaaa 599  Q
    ||||||  |||||||    
T  50392562 cggaaatctcaaaaa 50392548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 512 - 599
Target Start/End: Complemental strand, 53894217 - 53894130
Alignment:
Q  512 ataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    ||||||||||||||||||||| | ||||  |||||||||||  || | |||| ||||||||||||||| |||| ||||||||||||||    
T  53894217 ataatccggaatgatgttttcttttgttaaagggtgaaaaaatgactaacgggtttttccggattttgcaatcaggaaacttcaaaaa 53894130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 501 - 599
Target Start/End: Complemental strand, 17933374 - 17933276
Alignment:
Q  501 ttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||||||||  |||||| |||||||||||||| | ||||  |||||| ||||  || | |||||||||||| ||||||||||||| |||||||||||||    
T  17933374 ttccggattatataatctggaatgatgttttcttttgttaaagggtgcaaaaatgaataacggatttttccagattttgtaatccagaaacttcaaaaa 17933276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 521 - 599
Target Start/End: Complemental strand, 48319281 - 48319204
Alignment:
Q  521 aatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||||||||||| | ||||  |||||||||||  |||| ||||||||||||||| ||||||||||||||||||||||||    
T  48319281 aatgatgttttcttttgttaaagggtgaaaaaatgagtgacggatttttccgga-tttgtaatccggaaacttcaaaaa 48319204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 501 - 599
Target Start/End: Original strand, 7931591 - 7931686
Alignment:
Q  501 ttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||||||||  |||||||||||||   ||||| | ||||  |||||||||||  |||| |||| ||||||||||||||| |||||||||||||||||||    
T  7931591 ttccggattatataatccggaatg---ttttcttttgttaaagggtgaaaaaatgagtaacgggtttttccggattttgcaatccggaaacttcaaaaa 7931686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 512 - 599
Target Start/End: Original strand, 40703604 - 40703692
Alignment:
Q  512 ataatccggaatgatgttttcctgtgttgtagggtgaaaa-atggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||||| |||||||||||||| | | ||  |||||||||| |  |||| ||||||||||||||||||||||||||||||| ||||||||    
T  40703604 ataatctggaatgatgttttctttttttaaagggtgaaaagaatgagtaacggatttttccggattttgtaatccggaaatttcaaaaa 40703692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 500 - 599
Target Start/End: Complemental strand, 25752685 - 25752583
Alignment:
Q  500 tttccggatttcataatccggaatgatgttttcctgt--gttgtagggtgaaaaatg-gagttacggatttttccggattttgtaatccggaaacttcaa 596  Q
    ||||||||||| ||||||||||||||||||||  | |  |||  | |||||||||   |||| | ||||||||||||||||||||||||||||| |||||    
T  25752685 tttccggattttataatccggaatgatgtttttttttttgttaaaaggtgaaaaaaatgagtaatggatttttccggattttgtaatccggaaatttcaa 25752586  T
Q  597 aaa 599  Q
    |||    
T  25752585 aaa 25752583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 526 - 591
Target Start/End: Original strand, 38416520 - 38416585
Alignment:
Q  526 tgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaac 591  Q
    ||||||||| |||| ||||||||||||  ||||| ||||||||| |  ||||||||||||||||||    
T  38416520 tgttttcctttgttatagggtgaaaaaatgagttgcggattttttcaaattttgtaatccggaaac 38416585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 500 - 566
Target Start/End: Complemental strand, 42660496 - 42660430
Alignment:
Q  500 tttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatt 566  Q
    ||||||||||| ||||||| ||||  ||||||||| ||||  |||||||||||  ||||||||||||    
T  42660496 tttccggattttataatccagaatagtgttttcctttgttaaagggtgaaaaaatgagttacggatt 42660430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 566 - 599
Target Start/End: Original strand, 8106387 - 8106420
Alignment:
Q  566 ttttccggattttgtaatccggaaacttcaaaaa 599  Q
    ||||||||||||||||||||| ||||||||||||    
T  8106387 ttttccggattttgtaatccgaaaacttcaaaaa 8106420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 486 - 530
Target Start/End: Original strand, 27631864 - 27631908
Alignment:
Q  486 aaatgccctggagatttccggatttcataatccggaatgatgttt 530  Q
    ||||||||| ||| ||||| |||||||||||||||||| ||||||    
T  27631864 aaatgcccttgaggtttccagatttcataatccggaatcatgttt 27631908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 8e-41; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 486 - 599
Target Start/End: Original strand, 21004297 - 21004410
Alignment:
Q  486 aaatgccctggagatttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatcc 585  Q
    ||||||||| ||| ||||| ||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  21004297 aaatgcccttgaggtttccagatttcataatccggaatggtgttttcctttgttatagggtgaaaaatggagttacggatttttccggattttgtaatcc 21004396  T
Q  586 ggaaacttcaaaaa 599  Q
    |||||||| |||||    
T  21004397 ggaaactttaaaaa 21004410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 501 - 599
Target Start/End: Original strand, 3094603 - 3094701
Alignment:
Q  501 ttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    ||||| |||| ||||| ||||||| ||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  3094603 ttccgcatttaataattcggaatggtgttttcctttgttatagggtgaaaaatggagttacgggtttttccggattttgtaatccggaaacttcaaaaa 3094701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 486 - 599
Target Start/End: Complemental strand, 7971249 - 7971136
Alignment:
Q  486 aaatgccctggagatttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatcc 585  Q
    ||||||||| ||| ||||| ||||||||||||  |||||  ||||||||  ||| |||||||||||| |||||||||||||||||||||||||||||||     
T  7971249 aaatgcccttgaggtttccagatttcataatctagaatggcgttttccttcgttatagggtgaaaaacggagttacggatttttccggattttgtaatct 7971150  T
Q  586 ggaaacttcaaaaa 599  Q
    ||||||||||||||    
T  7971149 ggaaacttcaaaaa 7971136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 506 - 599
Target Start/End: Original strand, 16310526 - 16310619
Alignment:
Q  506 gatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    ||||||||||||| ||||| ||||||||| |||| | ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  16310526 gatttcataatccagaatggtgttttcctttgttatggggtgaaaaatggagttacaggtttttccggattttgtaatccggaaacttcaaaaa 16310619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 514 - 599
Target Start/End: Complemental strand, 31520116 - 31520031
Alignment:
Q  514 aatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    ||||||||||| ||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  31520116 aatccggaatggtgttttcctttgttatagggtgaaaaatggagttacggctttttccggattttgtaatccagaaacttcaaaaa 31520031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 486 - 599
Target Start/End: Original strand, 37248466 - 37248578
Alignment:
Q  486 aaatgccctggagatttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatcc 585  Q
    ||||||||| ||| ||||||||||||| ||||| ||||| ||||||||| |||| ||||||||||||||||||||||| |||||| ||||||||||||||    
T  37248466 aaatgcccttgag-tttccggatttcaaaatccagaatggtgttttcctttgttatagggtgaaaaatggagttacgggtttttctggattttgtaatcc 37248564  T
Q  586 ggaaacttcaaaaa 599  Q
    | |||||| |||||    
T  37248565 gaaaacttaaaaaa 37248578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 486 - 599
Target Start/End: Original strand, 41530576 - 41530689
Alignment:
Q  486 aaatgccctggagatttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatcc 585  Q
    ||||||||| ||  |||| |||||| ||||||||||||||||||||||| ||||  |||||| ||||  |||||||||||||||||| ||||||||||||    
T  41530576 aaatgcccttgaagtttctggattttataatccggaatgatgttttcctttgttaaagggtggaaaaatgagttacggatttttccgaattttgtaatcc 41530675  T
Q  586 ggaaacttcaaaaa 599  Q
    |||||  |||||||    
T  41530676 ggaaatctcaaaaa 41530689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 501 - 599
Target Start/End: Complemental strand, 8885690 - 8885592
Alignment:
Q  501 ttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||||||||  ||||||||||||||||||||| | ||||  || ||||||||  |||| |||| |||||||||||||||||||||||||||||||||||    
T  8885690 ttccggattatataatccggaatgatgttttcttttgttaaagagtgaaaaaatgagtaacgggtttttccggattttgtaatccggaaacttcaaaaa 8885592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 500 - 599
Target Start/End: Original strand, 44106144 - 44106243
Alignment:
Q  500 tttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    ||||||||||| ||||||  ||||| ||||||| | ||||  |||||||||||  |||| |||||||||||| |||||||||||||||||||||||||||    
T  44106144 tttccggattttataatctagaatggtgttttcttttgttaaagggtgaaaaaatgagtaacggatttttccagattttgtaatccggaaacttcaaaaa 44106243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 523 - 599
Target Start/End: Complemental strand, 27928156 - 27928080
Alignment:
Q  523 tgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||||||||| | ||||  |||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||    
T  27928156 tgatgttttcttttgttaaagggtgaaaaaatgagtaacggatttttccggattttgtaatccggaaacttcaaaaa 27928080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 515 - 599
Target Start/End: Original strand, 28916719 - 28916803
Alignment:
Q  515 atccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||||||||||||||||| | ||||  |||||||||||  | || |||| |||||||||||||||||||||||||||||||||||    
T  28916719 atccggaatgatgttttcttttgttaaagggtgaaaaaatgggtaacgggtttttccggattttgtaatccggaaacttcaaaaa 28916803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 512 - 599
Target Start/End: Complemental strand, 42281120 - 42281033
Alignment:
Q  512 ataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    ||||||||||||||||||||  | ||||  |||||||||||  |||| |||||||||||||||||| |||||||| ||||||||||||    
T  42281120 ataatccggaatgatgtttttttttgttaaagggtgaaaaaatgagtaacggatttttccggatttcgtaatccgaaaacttcaaaaa 42281033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 501 - 599
Target Start/End: Complemental strand, 36404391 - 36404293
Alignment:
Q  501 ttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||||||||| |||||||||||||  |||| ||| ||||  |||||||||||  |||||||||||| ||||||||||||||||||| |||  |||||||    
T  36404391 ttccggattttataatccggaatggagtttccctttgttaaagggtgaaaaaatgagttacggattattccggattttgtaatccgaaaatctcaaaaa 36404293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 501 - 599
Target Start/End: Original strand, 9073426 - 9073524
Alignment:
Q  501 ttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||||||||  ||||| || |||||||||||| | ||||  ||||| |||||  |||| ||||| |||| |||||||  ||||||||||||||||||||    
T  9073426 ttccggattatataattcgaaatgatgttttcttttgttaaagggttaaaaaatgagtaacggactttttcggatttgttaatccggaaacttcaaaaa 9073524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 561 - 599
Target Start/End: Complemental strand, 35676715 - 35676677
Alignment:
Q  561 cggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  35676715 cggatttttccggattttgtaatccggaaactacaaaaa 35676677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 486 - 530
Target Start/End: Original strand, 31519383 - 31519427
Alignment:
Q  486 aaatgccctggagatttccggatttcataatccggaatgatgttt 530  Q
    ||||||||| ||| |||||||||||||||||||||||| ||||||    
T  31519383 aaatgcccttgaggtttccggatttcataatccggaatcatgttt 31519427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 495 - 554
Target Start/End: Original strand, 40994735 - 40994794
Alignment:
Q  495 ggagatttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatg 554  Q
    |||| ||||||||||  ||||||||||||||||||||| | ||||  |||||||||||||    
T  40994735 ggagctttccggattatataatccggaatgatgttttcttttgttaaagggtgaaaaatg 40994794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 559 - 599
Target Start/End: Original strand, 34853309 - 34853349
Alignment:
Q  559 tacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    ||||| |||||||||||||||||||||| |||||| |||||    
T  34853309 tacgggtttttccggattttgtaatccgaaaactttaaaaa 34853349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 2e-38; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 486 - 599
Target Start/End: Original strand, 23442645 - 23442758
Alignment:
Q  486 aaatgccctggagatttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatcc 585  Q
    ||||||||| ||| |||||||||||||| |||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||| |||||     
T  23442645 aaatgcccttgaggtttccggatttcattatccggaatgatgttttcctttgttataaggtgaaaaatggagttacggatttttccggattttataatct 23442744  T
Q  586 ggaaacttcaaaaa 599  Q
    ||||||||||||||    
T  23442745 ggaaacttcaaaaa 23442758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 486 - 599
Target Start/End: Complemental strand, 18583796 - 18583683
Alignment:
Q  486 aaatgccctggagatttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatcc 585  Q
    ||||||||| ||| ||| ||||||||||||||||||||| ||||||||| |||| |||||||||||||| ||||||||| |||||||||||||||||||     
T  18583796 aaatgcccttgaggttttcggatttcataatccggaatggtgttttcctttgttatagggtgaaaaatgaagttacggacttttccggattttgtaatct 18583697  T
Q  586 ggaaacttcaaaaa 599  Q
    |||||||| |||||    
T  18583696 ggaaacttaaaaaa 18583683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 500 - 599
Target Start/End: Complemental strand, 34162960 - 34162860
Alignment:
Q  500 tttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttac-ggatttttccggattttgtaatccggaaacttcaaaa 598  Q
    ||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||    
T  34162960 tttccggatttcataatccggaatggtgttttcctttgttatagggtgaaaaatggagttgcgggttttttccggattttgtaatccggaaacttcaaaa 34162861  T
Q  599 a 599  Q
    |    
T  34162860 a 34162860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 486 - 599
Target Start/End: Complemental strand, 33611662 - 33611549
Alignment:
Q  486 aaatgccctggagatttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatcc 585  Q
    ||||||||| ||| |||| |||||||||||||| ||||| |||||| || |||| ||||||||||||||||||||||||||||| |||||||||||||      
T  33611662 aaatgcccttgaggtttctggatttcataatccagaatggtgtttttctttgttatagggtgaaaaatggagttacggattttttcggattttgtaattt 33611563  T
Q  586 ggaaacttcaaaaa 599  Q
    ||||||||||||||    
T  33611562 ggaaacttcaaaaa 33611549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 486 - 597
Target Start/End: Original strand, 17000287 - 17000396
Alignment:
Q  486 aaatgccctggagatttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatcc 585  Q
    ||||||||| ||| |||| |||||||||||||| ||||| ||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||| |    
T  17000287 aaatgcccttgagttttc-ggatttcataatccagaatggtgttttcctttgttatagggtgaaaaatggagttacgg-tttttccggattttgtaattc 17000384  T
Q  586 ggaaacttcaaa 597  Q
    |||||| |||||    
T  17000385 ggaaacatcaaa 17000396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 486 - 568
Target Start/End: Original strand, 32542313 - 32542395
Alignment:
Q  486 aaatgccctggagatttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttt 568  Q
    ||||||| | ||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  32542313 aaatgccattgaggtttccggatttcataatccggaatggtgttttcctttgttgtagggtgaaaaatggagttacggatttt 32542395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 504 - 599
Target Start/End: Complemental strand, 41584904 - 41584809
Alignment:
Q  504 cggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||||||||||||| |||||| ||||||| | |||| |||||||||||||| |||||||| |||||| ||||||||||||||||||| ||||||||    
T  41584904 cggatttcataatcaggaatggtgttttcttttgttatagggtgaaaaatgaagttacgggtttttctggattttgtaatccggaaatttcaaaaa 41584809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 500 - 599
Target Start/End: Original strand, 49786190 - 49786289
Alignment:
Q  500 tttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||||||||||||||||| |||||  ||||||||| | || |||||||||||||||||||| |||||||||||||||||| |||||| |||||| |||||    
T  49786190 tttccggatttcataatctggaattgtgttttcctttattatagggtgaaaaatggagttatggatttttccggattttgcaatccgaaaactttaaaaa 49786289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 486 - 568
Target Start/End: Complemental strand, 24471556 - 24471474
Alignment:
Q  486 aaatgccctggagatttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttt 568  Q
    ||||| ||| ||| ||||||||||||||||||||||||| ||||||||| |||| ||||||| ||||||||||||||||||||    
T  24471556 aaatgtccttgaggtttccggatttcataatccggaatggtgttttcctttgttatagggtgcaaaatggagttacggatttt 24471474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 486 - 568
Target Start/End: Complemental strand, 30829707 - 30829625
Alignment:
Q  486 aaatgccctggagatttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttt 568  Q
    ||||||||| ||  ||||||||||||||||||||||||| ||||||||| |||| |||||||||||||| |||||||||||||    
T  30829707 aaatgcccttgaagtttccggatttcataatccggaatggtgttttcctttgttatagggtgaaaaatgaagttacggatttt 30829625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 501 - 599
Target Start/End: Complemental strand, 32817848 - 32817750
Alignment:
Q  501 ttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||||||||  ||||||||||||||||||||| | ||||  |||||||||||  |||| |||| ||||||| |||||||||||||||||||||||||||    
T  32817848 ttccggattatataatccggaatgatgttttcttttgttaaagggtgaaaaaatgagtaacgggtttttccagattttgtaatccggaaacttcaaaaa 32817750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 486 - 599
Target Start/End: Original strand, 27794762 - 27794875
Alignment:
Q  486 aaatgccctggagatttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatcc 585  Q
    ||||||||| || |||| |||||||||||||||| | || ||||||||| |||| ||||||||||||  |||||| |||||||| | |||||||||||||    
T  27794762 aaatgcccttgaaattttcggatttcataatccgaactggtgttttcctttgttatagggtgaaaaaatgagttatggattttttcagattttgtaatcc 27794861  T
Q  586 ggaaacttcaaaaa 599  Q
    | |||  |||||||    
T  27794862 gaaaatctcaaaaa 27794875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 512 - 599
Target Start/End: Original strand, 42545901 - 42545987
Alignment:
Q  512 ataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    ||||||||||||| |||| || | ||||  ||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||    
T  42545901 ataatccggaatggtgttatcttttgttaaagggtgaaaaatgaa-taacggatttttccggattttgtaatccggaaacttcaaaaa 42545987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 500 - 590
Target Start/End: Complemental strand, 43319434 - 43319344
Alignment:
Q  500 tttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaa 590  Q
    |||| |||||| |||||| ||||   ||||||||| ||||  |||||||||||  ||||||||||||||||||||||||||||||||||||    
T  43319434 tttctggattttataatctggaacagtgttttcctttgttaaagggtgaaaaaatgagttacggatttttccggattttgtaatccggaaa 43319344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 504 - 599
Target Start/End: Complemental strand, 6223972 - 6223877
Alignment:
Q  504 cggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||||||||||||||| | |  ||||||||| |||| ||||||||||||  ||||||||||||||| || |||||  |||||| ||||||||||||    
T  6223972 cggatttcataatccgaactcgtgttttcctttgttatagggtgaaaaaatgagttacggattttttcgaatttttcaatccgaaaacttcaaaaa 6223877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 512 - 599
Target Start/End: Complemental strand, 15070068 - 15069981
Alignment:
Q  512 ataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||||||| |||||||||||| | ||||  |||| ||| ||  |||| |||||| ||| |||||||||||||||||||||||||||||    
T  15070068 ataatccgaaatgatgttttcttttgttaaagggagaacaaatgagtaacggatattttcggattttgtaatccggaaacttcaaaaa 15069981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 501 - 599
Target Start/End: Complemental strand, 40908171 - 40908073
Alignment:
Q  501 ttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||| ||||| |||||||| |||| ||||||| | ||||  |||||||||||  |||| ||||||||||  | |||||| |||||||||||||||||||    
T  40908171 ttccagattttataatccgaaatggtgttttcttttgttaaagggtgaaaaaatgagtaacggattttttagaattttgcaatccggaaacttcaaaaa 40908073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 542 - 599
Target Start/End: Complemental strand, 44573292 - 44573235
Alignment:
Q  542 agggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||||||||||  |||| || ||||||| |||||||||||||||||||||||||||||    
T  44573292 agggtgaaaaaatgagtaacagattttttcggattttgtaatccggaaacttcaaaaa 44573235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 512 - 599
Target Start/End: Complemental strand, 40650902 - 40650814
Alignment:
Q  512 ataatccggaatgatgttttcctgtgttgtagggtgaaaaatg-gagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    ||||||||||||| ||||||| | ||||  || ||||||||   |||| |||||||||| |||| ||||||||||||||||||||||||    
T  40650902 ataatccggaatggtgttttcttttgttaaagcgtgaaaaaaatgagtaacggattttttcggaatttgtaatccggaaacttcaaaaa 40650814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 555 - 599
Target Start/End: Complemental strand, 45047033 - 45046989
Alignment:
Q  555 gagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||    
T  45047033 gagtaacggatttttccggattttgtaatccgaaaacttcaaaaa 45046989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 512 - 599
Target Start/End: Complemental strand, 45568103 - 45568015
Alignment:
Q  512 ataatccggaatgatgttttcctgtgttgtagggtgaaaaatg-gagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    ||||||||||||||| ||||| | ||||  |||||||||||   |||| |||| |||||||| |||||||||| |||||||||||||||    
T  45568103 ataatccggaatgatattttcttttgttaaagggtgaaaaaaatgagtaacgggtttttccgaattttgtaattcggaaacttcaaaaa 45568015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 542 - 599
Target Start/End: Original strand, 7011172 - 7011229
Alignment:
Q  542 agggtgaaaaatggagttacggatttttcc-ggattttgtaatccggaaacttcaaaaa 599  Q
    ||||||||||||| ||| |||||||||| | ||||||||||||||||||||||||||||    
T  7011172 agggtgaaaaatg-agtaacggattttttctggattttgtaatccggaaacttcaaaaa 7011229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 501 - 599
Target Start/End: Complemental strand, 52745054 - 52744956
Alignment:
Q  501 ttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||||||||  ||||||  ||||||| ||||| | ||||  || ||||||||  |||| ||||||||||||| ||||||||||| | ||||||||||||    
T  52745054 ttccggattatataatctagaatgatattttcttttgttaaagtgtgaaaaaatgagtaacggatttttccgaattttgtaatctgaaaacttcaaaaa 52744956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 500 - 585
Target Start/End: Original strand, 38950202 - 38950285
Alignment:
Q  500 tttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatcc 585  Q
    ||||||||||| ||||| ||||||| | ||||||| ||||  | | ||||||||| |||||||||||||||| |||||||||||||    
T  38950202 tttccggattttataattcggaatggtattttcctttgttaaaag-tgaaaaatg-agttacggatttttccagattttgtaatcc 38950285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 501 - 576
Target Start/End: Original strand, 38885161 - 38885236
Alignment:
Q  501 ttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggatt 576  Q
    |||||||||  ||||||||||||| ||||||| | ||||  |||||||||||  |||| || ||||||||||||||    
T  38885161 ttccggattatataatccggaatggtgttttcttttgttaaagggtgaaaaaatgagtaacagatttttccggatt 38885236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 561 - 599
Target Start/End: Complemental strand, 26723660 - 26723622
Alignment:
Q  561 cggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||||||||  ||||||||||||||||||||||||||||    
T  26723660 cggatttttttggattttgtaatccggaaacttcaaaaa 26723622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 486 - 530
Target Start/End: Complemental strand, 32542876 - 32542832
Alignment:
Q  486 aaatgccctggagatttccggatttcataatccggaatgatgttt 530  Q
    |||| |||| ||| |||||||||||||||||||||||| ||||||    
T  32542876 aaatacccttgaggtttccggatttcataatccggaatcatgttt 32542832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 486 - 530
Target Start/End: Complemental strand, 49786944 - 49786900
Alignment:
Q  486 aaatgccctggagatttccggatttcataatccggaatgatgttt 530  Q
    ||||| ||| ||| |||||||||||||||||||||||| ||||||    
T  49786944 aaatgtccttgaggtttccggatttcataatccggaatcatgttt 49786900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 501 - 599
Target Start/End: Original strand, 6156615 - 6156713
Alignment:
Q  501 ttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||||||||||||||||||||||| ||||||||| |||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6156615 ttccggatttcataatccggaatggtgttttcctttgttatatggtgaaaaatggagttacgggtttttccggattttgtaatccggaaacttcaaaaa 6156713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 501 - 599
Target Start/End: Original strand, 15799109 - 15799207
Alignment:
Q  501 ttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||||||||||||||||||||||| | ||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  15799109 ttccggatttcataatccggaatggtattttcctttgttatagggtgaaaaatggagttacgggtttttccggattttgtaatccggaaacttcaaaaa 15799207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 486 - 599
Target Start/End: Complemental strand, 4064971 - 4064859
Alignment:
Q  486 aaatgccctggagatttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatcc 585  Q
    ||||||||| ||| ||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||| |||||||||||| ||||||||    
T  4064971 aaatgcccttgag-tttccggatttcataatccggaatggtgttttcctttgttatagggtgaaaaatggagttacgggtttttccggattatgtaatcc 4064873  T
Q  586 ggaaacttcaaaaa 599  Q
    |||||||| |||||    
T  4064872 ggaaactttaaaaa 4064859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 486 - 599
Target Start/End: Original strand, 26318987 - 26319100
Alignment:
Q  486 aaatgccctggagatttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatcc 585  Q
    ||||||||| | | ||||||||||||||||| ||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  26318987 aaatgcccttgcggtttccggatttcataattcggaatggtgttttcctttgttatagggtgaaaaatggagttacggatttttccggattttgttatcc 26319086  T
Q  586 ggaaacttcaaaaa 599  Q
    ||||||||| ||||    
T  26319087 ggaaacttccaaaa 26319100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 500 - 599
Target Start/End: Original strand, 33487493 - 33487592
Alignment:
Q  500 tttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    ||||||||||||||||||||||||| ||||||||| ||||  |||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||    
T  33487493 tttccggatttcataatccggaatggtgttttcctttgttacagggtgaaaaatggagttacgggtttttccgaattttgtaatccgaaaacttcaaaaa 33487592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 486 - 599
Target Start/End: Complemental strand, 26190550 - 26190437
Alignment:
Q  486 aaatgccctggagatttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatcc 585  Q
    ||||| ||| ||| ||||| || ||||||||| |||||| ||||||||| | || | |||||||||||||||||||||||||||||||||||||||||||    
T  26190550 aaatgtccttgaggtttccagacttcataatctggaatggtgttttcctttcttatcgggtgaaaaatggagttacggatttttccggattttgtaatcc 26190451  T
Q  586 ggaaacttcaaaaa 599  Q
    ||||||||||||||    
T  26190450 ggaaacttcaaaaa 26190437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 486 - 599
Target Start/End: Complemental strand, 37095165 - 37095053
Alignment:
Q  486 aaatgccctggagatttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatcc 585  Q
    ||||||||| ||| ||| || |||||||||||||||||| ||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  37095165 aaatgcccttgaggttttcgaatttcataatccggaatggtgttt-cctttgttatagggtgaaaaatggagttacggatttttccggattttgtaatcc 37095067  T
Q  586 ggaaacttcaaaaa 599  Q
    | |||||| |||||    
T  37095066 gaaaacttaaaaaa 37095053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 486 - 599
Target Start/End: Complemental strand, 12465355 - 12465245
Alignment:
Q  486 aaatgccctggagatttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatcc 585  Q
    ||||||| | ||| ||| |||||||||| |||| ||||| ||||| |||   || |||||||||||||||||||||||||||||||||||||||||||||    
T  12465355 aaatgcctttgagtttttcggatttcatgatccagaatggtgtttgcct---ttatagggtgaaaaatggagttacggatttttccggattttgtaatcc 12465259  T
Q  586 ggaaacttcaaaaa 599  Q
    ||||||||||||||    
T  12465258 ggaaacttcaaaaa 12465245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 501 - 599
Target Start/End: Complemental strand, 31929342 - 31929245
Alignment:
Q  501 ttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||||||||  ||||||||||||||||||||| | ||||  ||||||||||||| ||| |||||||||||||||||||||||||| |||| ||||||||    
T  31929342 ttccggattatataatccggaatgatgttttcttttgttaaagggtgaaaaatg-agtaacggatttttccggattttgtaatccagaaatttcaaaaa 31929245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 486 - 599
Target Start/End: Original strand, 27212577 - 27212690
Alignment:
Q  486 aaatgccctggagatttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatcc 585  Q
    ||||||| | || |||| |||||||||||||||| | |||||||||||| |||| ||||||||||||  ||||||||| ||||| |||||||||||||||    
T  27212577 aaatgcctttgaaattttcggatttcataatccgaactgatgttttcctttgttatagggtgaaaaaatgagttacgggttttttcggattttgtaatcc 27212676  T
Q  586 ggaaacttcaaaaa 599  Q
    | |||  |||||||    
T  27212677 gaaaatctcaaaaa 27212690  T

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Target: chr5; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 512 - 599
Target Start/End: Complemental strand, 40620216 - 40620129
Alignment:
Q  512 ataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||||||  |||||||||||| | ||||| |||||||||||  |||| || |||||||||||||||||||||||||||||||||||||    
T  40620216 ataatccataatgatgttttcttttgttgaagggtgaaaaaatgagtaacagatttttccggattttgtaatccggaaacttcaaaaa 40620129  T

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Target: chr5; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 500 - 599
Target Start/End: Original strand, 25746910 - 25747008
Alignment:
Q  500 tttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    ||||||||||| ||||| ||||||||||||||| | ||||  |  ||||||||  |||| ||||||||||||||||||| ||||||||||||||||||||    
T  25746910 tttccggattttataattcggaatgatgttttcttttgtt-aaaagtgaaaaaatgagtaacggatttttccggattttctaatccggaaacttcaaaaa 25747008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 512 - 599
Target Start/End: Complemental strand, 28083604 - 28083517
Alignment:
Q  512 ataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    ||||||||||||||||||||| | ||||  ||||||| |||  |||| |||| |||||||||||||||||||||||||| ||||||||    
T  28083604 ataatccggaatgatgttttcttttgttaaagggtgagaaaatgagtaacgggtttttccggattttgtaatccggaaaattcaaaaa 28083517  T

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Target: chr5; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 490 - 568
Target Start/End: Original strand, 34440617 - 34440695
Alignment:
Q  490 gccctggagatttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttt 568  Q
    ||||| ||| |||||| ||||||||||| | |||||||||||||| |||| |||||| |||||||||||||||||||||    
T  34440617 gcccttgaggtttccgaatttcataatctgaaatgatgttttcctttgttatagggtaaaaaatggagttacggatttt 34440695  T

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Target: chr5; HSP #15
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 504 - 599
Target Start/End: Original strand, 15957637 - 15957731
Alignment:
Q  504 cggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    ||||||| |||||||| |||| ||||||| | ||||  ||||||||||||| ||| | |||||||||||||||||||||| |||||||||| ||||    
T  15957637 cggattttataatccgaaatggtgttttcttttgttaaagggtgaaaaatg-agtaatggatttttccggattttgtaattcggaaacttcgaaaa 15957731  T

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Target: chr5; HSP #16
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 501 - 599
Target Start/End: Complemental strand, 38693020 - 38692921
Alignment:
Q  501 ttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttac-ggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||||||||  ||||||||||||||||||||| | ||||  |||||||||||  |||| || || |||||||| |||||||||||||||||||| |||||    
T  38693020 ttccggattatataatccggaatgatgttttcttttgttaaagggtgaaaaaatgagtaacgggttttttccgaattttgtaatccggaaacttaaaaaa 38692921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 502 - 599
Target Start/End: Original strand, 20891497 - 20891595
Alignment:
Q  502 tccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatg-gagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    ||||||||| |||||||| |||| ||||||| | | ||  | |||||||||   |||| ||||||||||||||||||||||||||||||||||||||||    
T  20891497 tccggattttataatccgaaatggtgttttcttttattaaatggtgaaaaaaatgagtaacggatttttccggattttgtaatccggaaacttcaaaaa 20891595  T

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Target: chr5; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 513 - 599
Target Start/End: Original strand, 39524672 - 39524758
Alignment:
Q  513 taatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    ||||||| |||||||||||| | ||||  |||||||||||  |||  | |||||||||||||||||||||||||||||||| |||||    
T  39524672 taatccgaaatgatgttttcttttgttaaagggtgaaaaaatgagcaatggatttttccggattttgtaatccggaaacttaaaaaa 39524758  T

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Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 500 - 599
Target Start/End: Complemental strand, 36359824 - 36359725
Alignment:
Q  500 tttccggatttcataatccggaatga-tgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaa 598  Q
    |||||||||||||||||| ||||||  ||||||| | ||||  ||||||||||||| ||||||||| |||| ||||||||||||||| ||||  ||||||    
T  36359824 tttccggatttcataatctggaatgggtgttttcttttgttaaagggtgaaaaatg-agttacggaatttttcggattttgtaatccagaaatctcaaaa 36359726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 504 - 595
Target Start/End: Original strand, 38871558 - 38871649
Alignment:
Q  504 cggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttca 595  Q
    ||||||| ||||||||||||| ||||||| | ||||  |  || |||||  |||| ||||||||||||||||||||||||||| ||||||||    
T  38871558 cggattttataatccggaatggtgttttcttttgttaaaaagttaaaaaatgagtaacggatttttccggattttgtaatccgaaaacttca 38871649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 561 - 599
Target Start/End: Complemental strand, 32842149 - 32842111
Alignment:
Q  561 cggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||||||||||||||||||||||||||||||||||||||    
T  32842149 cggatttttccggattttgtaatccggaaacttcaaaaa 32842111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 542 - 599
Target Start/End: Original strand, 38372234 - 38372291
Alignment:
Q  542 agggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||||||||||  |||| ||||||||||| |||||||||||||||||||||| |||||    
T  38372234 agggtgaaaaaatgagtaacggatttttctggattttgtaatccggaaacttaaaaaa 38372291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 501 - 599
Target Start/End: Complemental strand, 37184019 - 37183921
Alignment:
Q  501 ttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||||||||  |||||||||||| |||||||| | ||||   ||||||||||  |||| || ||||||||  ||||||||||||  |||||||||||||    
T  37184019 ttccggattatataatccggaataatgttttcttttgttaacgggtgaaaaaatgagtaacagatttttctagattttgtaatcttgaaacttcaaaaa 37183921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 486 - 551
Target Start/End: Complemental strand, 1350516 - 1350451
Alignment:
Q  486 aaatgccctggagatttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaa 551  Q
    ||||||||| || |||| |||||||||||||||| | || ||||||||| |||| |||||||||||    
T  1350516 aaatgcccttgaaattttcggatttcataatccgaactggtgttttcctttgttatagggtgaaaa 1350451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 500 - 584
Target Start/End: Complemental strand, 24203918 - 24203834
Alignment:
Q  500 tttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatc 584  Q
    ||||||||||| ||||||||||||| ||||||| | ||||  |||||| ||||  || | || ||||||| ||||||||||||||    
T  24203918 tttccggattttataatccggaatggtgttttcttttgttaaagggtggaaaaatgattaacagattttttcggattttgtaatc 24203834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 512 - 590
Target Start/End: Original strand, 28108277 - 28108354
Alignment:
Q  512 ataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaa 590  Q
    ||||||||||||||||||||| | ||||  ||| ||| |||  |||| |||| ||||||| ||||||||||||||||||    
T  28108277 ataatccggaatgatgttttcttttgttaaagg-tgagaaaatgagtaacgggtttttccagattttgtaatccggaaa 28108354  T

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Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 496 - 530
Target Start/End: Original strand, 38030765 - 38030799
Alignment:
Q  496 gagatttccggatttcataatccggaatgatgttt 530  Q
    ||||||||||||||||||||||||||||| |||||    
T  38030765 gagatttccggatttcataatccggaatggtgttt 38030799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 487 - 552
Target Start/End: Original strand, 38640590 - 38640655
Alignment:
Q  487 aatgccctggagatttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaa 552  Q
    |||||||| ||  ||||||||||| |||||| |||||| ||||||||| ||||  |||||||||||    
T  38640590 aatgcccttgaagtttccggattttataatctggaatggtgttttcctttgttaaagggtgaaaaa 38640655  T

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Target: chr3 (Bit Score: 79; Significance: 1e-36; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 486 - 599
Target Start/End: Complemental strand, 2358876 - 2358762
Alignment:
Q  486 aaatgccctggagatttcc-ggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatc 584  Q
    ||||||||| ||| ||||| |||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||| | |||||||||||||    
T  2358876 aaatgcccttgaggtttcccggatttcataatccggaatggtgttttcctttgttatagggtgaaaaatggagttacggattttcctggattttgtaatc 2358777  T
Q  585 cggaaacttcaaaaa 599  Q
    |||||||||||||||    
T  2358776 cggaaacttcaaaaa 2358762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 504 - 599
Target Start/End: Original strand, 47301944 - 47302039
Alignment:
Q  504 cggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    ||||||||||||| ||||||| ||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  47301944 cggatttcataattcggaatggtgttttcctttgttatagggtgaaaaatggagttatggatttttccggattttgtaatccggaaacttaaaaaa 47302039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 501 - 599
Target Start/End: Complemental strand, 3903043 - 3902945
Alignment:
Q  501 ttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||||||||||||||||||||||| ||||||||| |||| ||||||||||| ||||||||| | |||||||||||||||||||||| ||||||||||||    
T  3903043 ttccggatttcataatccggaatggtgttttcctttgttatagggtgaaaagtggagttactggtttttccggattttgtaatccgaaaacttcaaaaa 3902945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 486 - 599
Target Start/End: Original strand, 3937295 - 3937408
Alignment:
Q  486 aaatgccctggagatttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatcc 585  Q
    ||||||||| ||| ||||||||||| ||||||| ||||| ||||||||| |||| |||| |||||||||||||||||  |||||||| ||||||||||||    
T  3937295 aaatgcccttgaggtttccggattttataatccagaatggtgttttcctttgttataggatgaaaaatggagttacgagtttttccgaattttgtaatcc 3937394  T
Q  586 ggaaacttcaaaaa 599  Q
    ||||||||||||||    
T  3937395 ggaaacttcaaaaa 3937408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 486 - 599
Target Start/End: Original strand, 48303898 - 48304011
Alignment:
Q  486 aaatgccctggagatttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatcc 585  Q
    ||||||||| ||| ||||| ||||||||||||||||||| ||||||||| ||||  |||||||||||  |||||||||||||||||||||||||||||||    
T  48303898 aaatgcccttgaggtttccagatttcataatccggaatggtgttttcctttgttaaagggtgaaaaaatgagttacggatttttccggattttgtaatcc 48303997  T
Q  586 ggaaacttcaaaaa 599  Q
    |||||  |||||||    
T  48303998 ggaaatctcaaaaa 48304011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 500 - 599
Target Start/End: Original strand, 50716173 - 50716272
Alignment:
Q  500 tttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||||| |||||||||||||||||| | ||||||| |||| ||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||    
T  50716173 tttccgaatttcataatccggaatggtattttcctttgttatagggtgaaaaatggagttacgggttttttcggattttgtaatccgaaaacttcaaaaa 50716272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 500 - 599
Target Start/End: Complemental strand, 50796674 - 50796575
Alignment:
Q  500 tttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||||| |||||||||||||||||| | ||||||| |||| ||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||    
T  50796674 tttccgaatttcataatccggaatggtattttcctttgttatagggtgaaaaatggagttacgggttttttcggattttgtaatccgaaaacttcaaaaa 50796575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 500 - 595
Target Start/End: Original strand, 42936590 - 42936685
Alignment:
Q  500 tttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttca 595  Q
    ||||||||||||||||||||||||| ||||||||| ||||  ||||||||||| |||||||||||||||||| |||| |  ||||| |||||||||    
T  42936590 tttccggatttcataatccggaatggtgttttcctttgttaaagggtgaaaaaaggagttacggatttttccagattataaaatccagaaacttca 42936685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 500 - 599
Target Start/End: Original strand, 51258324 - 51258422
Alignment:
Q  500 tttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||| |||||||||||||||||||  ||||||||| ||||  ||||||||||||| ||||||||||||||||||||||||||||||  ||| ||||||||    
T  51258324 tttctggatttcataatccggaattgtgttttcctttgttaaagggtgaaaaatg-agttacggatttttccggattttgtaatccataaatttcaaaaa 51258422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 504 - 599
Target Start/End: Complemental strand, 501375 - 501280
Alignment:
Q  504 cggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    ||||||||||| ||| ||||| ||||||||| |||| ||||| |||||||||||||| |  |||||||||||||||||||||  ||||||||||||    
T  501375 cggatttcatattcctgaatggtgttttcctttgttatagggcgaaaaatggagttatgagtttttccggattttgtaatccaaaaacttcaaaaa 501280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 504 - 599
Target Start/End: Original strand, 28872928 - 28873023
Alignment:
Q  504 cggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||||||||||||| ||||||||||||| || |||| |||||||||||||| |||||||  |||||| ||||||| ||||||| ||| ||||||||    
T  28872928 cggatttcataatctggaatgatgtttttctttgttatagggtgaaaaatgaagttacgagtttttctggattttataatccgaaaatttcaaaaa 28873023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 512 - 599
Target Start/End: Complemental strand, 34821622 - 34821535
Alignment:
Q  512 ataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    ||||||||||||| ||||||| | ||||  |||||||||||  |||| ||||| ||||||||||||||||||||||||||||||||||    
T  34821622 ataatccggaatggtgttttcttttgttaaagggtgaaaaaatgagtaacggaattttccggattttgtaatccggaaacttcaaaaa 34821535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 500 - 599
Target Start/End: Complemental strand, 49096464 - 49096366
Alignment:
Q  500 tttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||||| ||||||||||| ||||||||||||| || | ||  ||||||||||||  |||||||||||||||||||||||||||||||||||  |||||||    
T  49096464 tttccgaatttcataatctggaatgatgtttttctttattaaagggtgaaaaata-agttacggatttttccggattttgtaatccggaaatctcaaaaa 49096366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 486 - 568
Target Start/End: Original strand, 52777148 - 52777230
Alignment:
Q  486 aaatgccctggagatttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttt 568  Q
    ||||||||| ||| ||| |||||||||||||| |||||| ||||||||| |||| |||| |||||||||||||||||||||||    
T  52777148 aaatgcccttgaggttttcggatttcataatctggaatggtgttttcctttgttataggatgaaaaatggagttacggatttt 52777230  T

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Target: chr3; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 486 - 569
Target Start/End: Complemental strand, 43473201 - 43473119
Alignment:
Q  486 aaatgccctggagatttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggattttt 569  Q
    ||||| ||| ||| |||||| |||||||||||||||||| ||||||||| |||| | |||||||||||||||||||||||||||    
T  43473201 aaatgtccttgaggtttccgaatttcataatccggaatggtgttttcctttgtt-ttgggtgaaaaatggagttacggattttt 43473119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 512 - 599
Target Start/End: Original strand, 47123039 - 47123126
Alignment:
Q  512 ataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||||| |||||||||||||| | ||||  |||||||||||  |||| |||| |||||||| ||||||||||||||||||||||||||    
T  47123039 ataatctggaatgatgttttcttttgttaaagggtgaaaaaatgagtaacgggtttttccgaattttgtaatccggaaacttcaaaaa 47123126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 512 - 599
Target Start/End: Original strand, 47130405 - 47130492
Alignment:
Q  512 ataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||||| |||||||||||||| | ||||  |||||||||||  |||| |||| |||||||| ||||||||||||||||||||||||||    
T  47130405 ataatctggaatgatgttttcttttgttaaagggtgaaaaaatgagtaacgggtttttccgaattttgtaatccggaaacttcaaaaa 47130492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 512 - 599
Target Start/End: Complemental strand, 47740158 - 47740071
Alignment:
Q  512 ataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    ||||||||||||||||||||| | ||||  |||||||||||  |||  || ||||||||| |||||||||||||||||||||||||||    
T  47740158 ataatccggaatgatgttttcttttgttaaagggtgaaaaaatgagcaacagatttttccagattttgtaatccggaaacttcaaaaa 47740071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 121
Target Start/End: Complemental strand, 26675361 - 26675261
Alignment:
Q  21 atggcccctgaatggatttccaatttaccaataacatctaaagtggatgtttatagttatggggttgtattgttggagatgataaccggaaagagtccaa 120  Q
    ||||| ||||||||||||| ||| || ||||| || || || || |||||||||||||||||  ||||  ||||||||||||| ||||||||||||||||    
T  26675361 atggcacctgaatggattttcaacttgccaatcacttccaaggtagatgtttatagttatggaattgtggtgttggagatgattaccggaaagagtccaa 26675262  T
Q  121 c 121  Q
    |    
T  26675261 c 26675261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 501 - 599
Target Start/End: Original strand, 35141999 - 35142094
Alignment:
Q  501 ttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||||||||  ||||||||||||| |||| || | ||||  |||||||||||   ||| |||||||||||||| |||||||||||||||||||||||||    
T  35141999 ttccggattatataatccggaatggtgttatcttttgttaaagggtgaaaaa---agtaacggatttttccgggttttgtaatccggaaacttcaaaaa 35142094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 60 - 123
Target Start/End: Complemental strand, 26713686 - 26713623
Alignment:
Q  60 aaagtggatgtttatagttatggggttgtattgttggagatgataaccggaaagagtccaacaa 123  Q
    ||||||||||||||||| ||||| |||||  ||||||||||||| |||||||||||||||||||    
T  26713686 aaagtggatgtttatagctatggagttgtggtgttggagatgattaccggaaagagtccaacaa 26713623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 123
Target Start/End: Complemental strand, 26736922 - 26736859
Alignment:
Q  60 aaagtggatgtttatagttatggggttgtattgttggagatgataaccggaaagagtccaacaa 123  Q
    ||||||||||||||||| ||||| |||||  ||||||||||||| || ||||||||||||||||    
T  26736922 aaagtggatgtttatagctatggagttgtggtgttggagatgattacaggaaagagtccaacaa 26736859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 123
Target Start/End: Complemental strand, 26743933 - 26743870
Alignment:
Q  60 aaagtggatgtttatagttatggggttgtattgttggagatgataaccggaaagagtccaacaa 123  Q
    ||||||||||||||||| ||||| || ||  ||||||||||||| |||||||||||||||||||    
T  26743933 aaagtggatgtttatagctatggagtcgttgtgttggagatgattaccggaaagagtccaacaa 26743870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 57 - 123
Target Start/End: Complemental strand, 26750861 - 26750795
Alignment:
Q  57 tctaaagtggatgtttatagttatggggttgtattgttggagatgataaccggaaagagtccaacaa 123  Q
    ||||||||||| |||||||| ||||| || ||  ||||||||||||| |||||||||||||||||||    
T  26750861 tctaaagtggacgtttatagctatggagtcgttgtgttggagatgattaccggaaagagtccaacaa 26750795  T

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Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 500 - 595
Target Start/End: Complemental strand, 33701554 - 33701457
Alignment:
Q  500 tttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatg--gagttacggatttttccggattttgtaatccggaaacttca 595  Q
    |||||||||||| |||||| ||||| ||||||||| ||||  | |||||||||    |||||||| |||||||||||||  |||||||||||||||||    
T  33701554 tttccggatttcgtaatccagaatggtgttttcctttgttaaaaggtgaaaaaaaatgagttacgaatttttccggattacgtaatccggaaacttca 33701457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 501 - 599
Target Start/End: Complemental strand, 38977985 - 38977887
Alignment:
Q  501 ttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||||||||  |||||| |||||| ||||||  | ||||  |||||||||||   ||| |||||||||||  |||||||||||||||||||||||||||    
T  38977985 ttccggattatataatctggaatggtgttttattttgttaaagggtgaaaaaataagtaacggatttttctagattttgtaatccggaaacttcaaaaa 38977887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 501 - 599
Target Start/End: Complemental strand, 51540853 - 51540753
Alignment:
Q  501 ttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatg--gagttacggatttttccggattttgtaatccggaaacttcaaaa 598  Q
    |||| ||||| |||||||| |||| ||||||| | ||||  |||||||||||    |||| ||||||||||| |||||||| ||||||||||||||||||    
T  51540853 ttccagattttataatccgaaatggtgttttcttttgttaaagggtgaaaaaaaatgagtaacggatttttctggattttggaatccggaaacttcaaaa 51540754  T
Q  599 a 599  Q
    |    
T  51540753 a 51540753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 500 - 595
Target Start/End: Original strand, 33700678 - 33700774
Alignment:
Q  500 tttccggatttcataatccggaatgatgttttcctgtgttgtagggtg--aaaaatggagttacggatttttccggattttgtaatccggaaacttca 595  Q
    |||| |||||||||||||||||||| ||||||||| ||||  ||||||  |||||||| |||||| |||||| ||||||  |||||||  ||||||||    
T  33700678 tttctggatttcataatccggaatggtgttttcctttgttaaagggtgaaaaaaatgg-gttacgaattttttcggattacgtaatccataaacttca 33700774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 486 - 530
Target Start/End: Original strand, 2358110 - 2358154
Alignment:
Q  486 aaatgccctggagatttccggatttcataatccggaatgatgttt 530  Q
    ||||||||| ||| |||||||||||||||||||||||| ||||||    
T  2358110 aaatgcccttgaggtttccggatttcataatccggaatcatgttt 2358154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 486 - 530
Target Start/End: Complemental strand, 3938849 - 3938805
Alignment:
Q  486 aaatgccctggagatttccggatttcataatccggaatgatgttt 530  Q
    ||||||||| ||| |||||||||||||||||||||||| ||||||    
T  3938849 aaatgcccttgaggtttccggatttcataatccggaatcatgttt 3938805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 564 - 599
Target Start/End: Original strand, 42936685 - 42936720
Alignment:
Q  564 atttttccggattttgtaatccggaaacttcaaaaa 599  Q
    ||||||||||||||||||||||| ||||||||||||    
T  42936685 atttttccggattttgtaatccgaaaacttcaaaaa 42936720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 512 - 583
Target Start/End: Original strand, 45244322 - 45244393
Alignment:
Q  512 ataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaat 583  Q
    ||||||||||||  ||||||||| ||||  | | |||||||  |||||| ||||||||||||||||||||||    
T  45244322 ataatccggaattgtgttttcctttgttaaaagatgaaaaaatgagttatggatttttccggattttgtaat 45244393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 513 - 599
Target Start/End: Complemental strand, 46623010 - 46622923
Alignment:
Q  513 taatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgt-aatccggaaacttcaaaaa 599  Q
    ||||| |||||||||||||| | ||||  | | |||||||  |||| ||||||||||||||||||| | || ||||||||||||||||    
T  46623010 taatctggaatgatgttttcttttgttaaatgatgaaaaaatgagtaacggatttttccggattttataaaaccggaaacttcaaaaa 46622923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 486 - 530
Target Start/End: Complemental strand, 8657787 - 8657743
Alignment:
Q  486 aaatgccctggagatttccggatttcataatccggaatgatgttt 530  Q
    ||||| ||| ||| |||||||||||||||||||||||| ||||||    
T  8657787 aaatgtccttgaggtttccggatttcataatccggaatcatgttt 8657743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 504 - 552
Target Start/End: Original strand, 8735096 - 8735144
Alignment:
Q  504 cggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaa 552  Q
    ||||||||||||| ||||||| ||||||||| ||||  |||||||||||    
T  8735096 cggatttcataattcggaatggtgttttcctttgttaaagggtgaaaaa 8735144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 504 - 552
Target Start/End: Original strand, 9087337 - 9087385
Alignment:
Q  504 cggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaa 552  Q
    ||||||||||||| ||||||| ||||||||| ||||  |||||||||||    
T  9087337 cggatttcataattcggaatggtgttttcctttgttaaagggtgaaaaa 9087385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 504 - 599
Target Start/End: Complemental strand, 30722044 - 30721948
Alignment:
Q  504 cggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatg-gagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||||||||||||| | | || ||||||||| |||| ||| ||||||||   |||||| |||| |||   |||||||||||||| ||||||||||||    
T  30722044 cggatttcataatctgaactggtgttttcctttgttatagagtgaaaaaaatgagttatggatgtttttagattttgtaatccgaaaacttcaaaaa 30721948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 567 - 599
Target Start/End: Complemental strand, 34821514 - 34821482
Alignment:
Q  567 tttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||||| ||||||||||||||||||||||||||    
T  34821514 tttccgaattttgtaatccggaaacttcaaaaa 34821482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 560 - 592
Target Start/End: Original strand, 39149791 - 39149823
Alignment:
Q  560 acggatttttccggattttgtaatccggaaact 592  Q
    |||||||||||||||||||||||||| ||||||    
T  39149791 acggatttttccggattttgtaatccagaaact 39149823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 571 - 599
Target Start/End: Original strand, 52777223 - 52777251
Alignment:
Q  571 cggattttgtaatccggaaacttcaaaaa 599  Q
    |||||||||||||||||||||||||||||    
T  52777223 cggattttgtaatccggaaacttcaaaaa 52777251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 8e-35; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 500 - 599
Target Start/End: Complemental strand, 33413584 - 33413485
Alignment:
Q  500 tttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    ||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||    
T  33413584 tttccggatttcataatccggaatggtgttttcctttgttatagggtgaaaaatggagttacgaatttttctgaattttgtaatccggaaacttcaaaaa 33413485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 500 - 599
Target Start/End: Original strand, 5699479 - 5699578
Alignment:
Q  500 tttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    ||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||| ||||| || |||||||||||||||||||| |||||    
T  5699479 tttccggatttcataatccggaatggtgttttcctttgttatagggtgaaaaatggagttacgggttttttcgaattttgtaatccggaaacttgaaaaa 5699578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 504 - 599
Target Start/End: Original strand, 32035038 - 32035133
Alignment:
Q  504 cggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||||||||||||| |||||||||||||| | |||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32035038 cggatttcataatctggaatgatgttttcttttgttatatgatgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 32035133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 486 - 578
Target Start/End: Original strand, 5638786 - 5638878
Alignment:
Q  486 aaatgccctggagatttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggatttt 578  Q
    ||||||||| ||| ||||||||||||||||||||||||| ||||||||| |||| ||||||||||||| ||||||||||||||||||||||||    
T  5638786 aaatgcccttgaggtttccggatttcataatccggaatggtgttttcctctgttatagggtgaaaaatagagttacggatttttccggatttt 5638878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 500 - 599
Target Start/End: Original strand, 23406717 - 23406816
Alignment:
Q  500 tttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||||||||||| |||||||||||| ||||||||| |||| ||||||||||||||||||||||  |||||||| |||| |||||||||||||||||||||    
T  23406717 tttccggatttcgtaatccggaatggtgttttcctttgttatagggtgaaaaatggagttacgagtttttccgaatttcgtaatccggaaacttcaaaaa 23406816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 501 - 599
Target Start/End: Complemental strand, 2813463 - 2813363
Alignment:
Q  501 ttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccgg--attttgtaatccggaaacttcaaaa 598  Q
    |||||||||||||||| ||||||| ||||||||| | || ||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||    
T  2813463 ttccggatttcataattcggaatggtgttttcctttattatagggtgaaaaatggagttacagatttttccggatattttgtaatccggaaacttcaaaa 2813364  T
Q  599 a 599  Q
    |    
T  2813363 a 2813363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 501 - 599
Target Start/End: Original strand, 7412750 - 7412848
Alignment:
Q  501 ttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||||||||  |||||| |||||||||||||| | ||||  |||||||||||  |||| |||| |||||||||||||||||||||||||||||||||||    
T  7412750 ttccggattatataatctggaatgatgttttcttttgttaaagggtgaaaaaatgagtaacgggtttttccggattttgtaatccggaaacttcaaaaa 7412848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 515 - 599
Target Start/End: Original strand, 17264346 - 17264430
Alignment:
Q  515 atccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||| ||||||||||||| | ||||  |||||||||||  |||| ||||||||||||||||||||||||| ||||||||||||||    
T  17264346 atcctgaatgatgttttcttttgttacagggtgaaaaaatgagtaacggatttttccggattttgtaatctggaaacttcaaaaa 17264430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 500 - 599
Target Start/End: Complemental strand, 4508540 - 4508441
Alignment:
Q  500 tttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    ||||||||||| ||||||| ||||| ||||||| | ||||  |||||||||||  |||| ||||||||||||||||||| |||||| |||| ||||||||    
T  4508540 tttccggattttataatccagaatggtgttttcttttgttagagggtgaaaaaatgagtaacggatttttccggattttataatccagaaatttcaaaaa 4508441  T

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Target: chr6; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 542 - 599
Target Start/End: Complemental strand, 1945725 - 1945668
Alignment:
Q  542 agggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||    
T  1945725 agggtgaaaaaatgagttacggatttttccggattttgtaatccgaaaacttcaaaaa 1945668  T

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Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 486 - 599
Target Start/End: Complemental strand, 3717534 - 3717422
Alignment:
Q  486 aaatgccctggagatttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatcc 585  Q
    ||||||||| ||| ||||||||||| ||||||  ||||| ||||||| | ||||  |||||||||||  |||| | ||  ||||||| ||||||||||||    
T  3717534 aaatgcccttgag-tttccggattttataatcttgaatggtgttttcttttgttaaagggtgaaaaaatgagtaatgggcttttccgaattttgtaatcc 3717436  T
Q  586 ggaaacttcaaaaa 599  Q
    ||||||||||||||    
T  3717435 ggaaacttcaaaaa 3717422  T

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Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 504 - 599
Target Start/End: Complemental strand, 24604597 - 24604501
Alignment:
Q  504 cggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatg-gagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    ||||||||||| |||| | || ||||||||| |||  ||||||||||||   |||||| ||||||||||| ||||||||||||  ||||||||||||    
T  24604597 cggatttcatattccgaactggtgttttcctttgtcatagggtgaaaaaaatgagttaaggatttttccgaattttgtaatccaaaaacttcaaaaa 24604501  T

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Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 501 - 599
Target Start/End: Complemental strand, 14587797 - 14587699
Alignment:
Q  501 ttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||||||||  |||||| |||||  | ||||| | ||||  |||||||||||  |||| | ||||||||||||||||||||||||| |||||| |||||    
T  14587797 ttccggattatataatctggaattgtattttcttttgttaaagggtgaaaaaatgagtaagggatttttccggattttgtaatccgaaaactttaaaaa 14587699  T

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Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 561 - 599
Target Start/End: Original strand, 9905100 - 9905138
Alignment:
Q  561 cggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    ||||||||||||||||||||||| |||||| ||||||||    
T  9905100 cggatttttccggattttgtaattcggaaatttcaaaaa 9905138  T

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Target: scaffold0137 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 501 - 599
Target Start/End: Complemental strand, 9734 - 9636
Alignment:
Q  501 ttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||||||||||||||| ||||||  ||||||||| |||| ||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||    
T  9734 ttccggatttcataattcggaattgtgttttcctttgttatagggtgaaaaatagagttacgggtttttccgaattttgtaatccggaaacttcaaaaa 9636  T

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Target: scaffold0182 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 512 - 599
Target Start/End: Original strand, 23056 - 23142
Alignment:
Q  512 ataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    |||||||| ||| |||||||| | ||||| ||||||||||||| ||| ||||||||||||| ||||| ||||||||||||||||||||    
T  23056 ataatccgtaattatgttttcttttgttgaagggtgaaaaatg-agtaacggatttttccgaattttataatccggaaacttcaaaaa 23142  T

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Target: scaffold0027 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 512 - 599
Target Start/End: Complemental strand, 142188 - 142102
Alignment:
Q  512 ataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaa 599  Q
    ||||| ||||||||||||||| | ||||  |||||||||||||  || || ||||||||| |||||||||||||||||||||||||||    
T  142188 ataattcggaatgatgttttcttttgttaaagggtgaaaaatgt-gtaacagatttttccagattttgtaatccggaaacttcaaaaa 142102  T

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Target: scaffold0010 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 512 - 583
Target Start/End: Original strand, 140541 - 140612
Alignment:
Q  512 ataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacggatttttccggattttgtaat 583  Q
    ||||||||||||||||||||| | ||||  | |||||||||  |||| | ||||||||||||||||||||||    
T  140541 ataatccggaatgatgttttcttttgttaaaaggtgaaaaaatgagtaaaggatttttccggattttgtaat 140612  T

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Target: scaffold0508 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 486 - 599
Target Start/End: Complemental strand, 3648 - 3534
Alignment:
Q  486 aaatgccctggagatttccggatttcataatccggaatgatgttttcctgtgttgtagggtgaaaaatggagttacgga--tttttccggattttgtaat 583  Q
    ||||||||| ||| |||||| || | ||||||||||||| ||||||| | ||||  |||||||||||  |||| ||| |  ||||| || ||||||||||    
T  3648 aaatgcccttgag-tttccgaatcttataatccggaatggtgttttcttttgttaaagggtgaaaaaatgagtaacgaattttttttcgaattttgtaat 3550  T
Q  584 ccggaaacttcaaaaa 599  Q
    |  |||||||||||||    
T  3549 ctagaaacttcaaaaa 3534  T

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