View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11823_high_4 (Length: 505)

Name: NF11823_high_4
Description: NF11823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11823_high_4
NF11823_high_4
[»] chr6 (3 HSPs)
chr6 (1-489)||(35093727-35094215)
chr6 (48-120)||(32863427-32863499)
chr6 (49-99)||(14390477-14390527)
[»] chr5 (1 HSPs)
chr5 (48-118)||(43537569-43537639)
[»] chr3 (4 HSPs)
chr3 (48-122)||(47364805-47364879)
chr3 (191-249)||(34239714-34239772)
chr3 (191-250)||(40678022-40678081)
chr3 (48-86)||(13806144-13806182)
[»] chr8 (1 HSPs)
chr8 (48-125)||(35514546-35514623)
[»] chr7 (1 HSPs)
chr7 (45-87)||(10195349-10195391)
[»] chr4 (1 HSPs)
chr4 (218-251)||(24962164-24962197)
[»] chr1 (1 HSPs)
chr1 (191-248)||(40563-40620)


Alignment Details
Target: chr6 (Bit Score: 473; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 1 - 489
Target Start/End: Complemental strand, 35094215 - 35093727
Alignment:
Q  1 caccgactttgttcccaatggaagcttggccgttcgccttcacggtattttcattttcacttcaactaataaacatcatagaatataagtttaatatttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  35094215 caccgactttgttcccaatggaagcttggccgttcgccttcacggtattttcattttcacttcaactaataaacatcagagaatataagtttaatatttt 35094116  T
Q  101 tcgcaccttttccttttacaatttccgaaaaaagatctaaatgttaaaaaatgtattgtatattttcctcacttttttccttttacaactaataagactt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  35094115 tcgcaccttttccttttacaatttccgaaaaaagatctaaatgttaaaaaatgtattgtatattttcctcacatttttccttttacaactaataagactt 35094016  T
Q  201 atataggcaatgagagcaacttactagtgtaactaacttttacatctaatacaggataccattctctaggacaggaaagccttgactggccaagcaggtt 300  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  35094015 atataggcaatgagagcaactaactagtgtaactaacttttacatctaatacaggataccattctataggacaggaaagccttgactggccaagcaggtt 35093916  T
Q  301 gaagatagtgaaaggtgtagcgaaagggattgaatatctatacaaggagttgccgaacttgattgcgcctcatggtcatcttaaatcctcaaatgttcta 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35093915 gaagatagtgaaaggtgtagcgaaagggattgaatatctatacaaggagttgccgaacttgattgcgcctcatggtcatcttaaatcctcaaatgttcta 35093816  T
Q  401 ttgaacgagtcattagagcctatactaaccgactacggattagtaccagtgataaaccaggatgttgctcatgaaataatggttatata 489  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35093815 ttgaacgagtcattagagcctatactaaccgactacggattagtaccagtgataaaccaggatgttgctcatgaaataatggttatata 35093727  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 48 - 120
Target Start/End: Original strand, 32863427 - 32863499
Alignment:
Q  48 ttttcattttcacttcaactaataaacatcatagaatataagtttaatatttttcgcaccttttccttttaca 120  Q
    |||||||||| |||||||||||||||||| ||||||||||  || |||| | ||| |||| ||||||||||||    
T  32863427 ttttcatttttacttcaactaataaacatgatagaatatagattcaatactcttctcaccatttccttttaca 32863499  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 49 - 99
Target Start/End: Original strand, 14390477 - 14390527
Alignment:
Q  49 tttcattttcacttcaactaataaacatcatagaatataagtttaatattt 99  Q
    ||||||||||||||||||||| |||||| ||| ||||||| || |||||||    
T  14390477 tttcattttcacttcaactaaaaaacatgatacaatataaattcaatattt 14390527  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 48 - 118
Target Start/End: Original strand, 43537569 - 43537639
Alignment:
Q  48 ttttcattttcacttcaactaataaacatcatagaatataagtttaatatttttcgcaccttttcctttta 118  Q
    |||||||||||||||||||||||||||||   ||||||||  ||||||||||||| |||| ||| ||||||    
T  43537569 ttttcattttcacttcaactaataaacataggagaatatagatttaatatttttctcaccattttctttta 43537639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 47364879 - 47364805
Alignment:
Q  48 ttttcattttcacttcaactaataaacatcatagaatataagtttaatatttttcgcaccttttccttttacaat 122  Q
    ||||||||||||||||||||||||||||| | |||| |||| ||||||||||| | |||| ||| |||| |||||    
T  47364879 ttttcattttcacttcaactaataaacataaaagaaaataaatttaatattttcctcaccattttctttcacaat 47364805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 191 - 249
Target Start/End: Complemental strand, 34239772 - 34239714
Alignment:
Q  191 aataagacttatataggcaatgagagcaacttactagtgtaactaacttttacatctaa 249  Q
    |||||||||||||||| | || ||| ||||| ||| |||||||||||||||||||||||    
T  34239772 aataagacttatatagccgattagaacaactaacttgtgtaactaacttttacatctaa 34239714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 250
Target Start/End: Original strand, 40678022 - 40678081
Alignment:
Q  191 aataagacttatataggcaatgagagcaacttactagtgtaactaacttttacatctaat 250  Q
    |||||||||||||||| || || || ||| ||| |||| |||||||||||||||||||||    
T  40678022 aataagacttatatagccagtgcgaacaatttagtagtataactaacttttacatctaat 40678081  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 48 - 86
Target Start/End: Complemental strand, 13806182 - 13806144
Alignment:
Q  48 ttttcattttcacttcaactaataaacatcatagaatat 86  Q
    ||||||||||||||||||||||||||||| | |||||||    
T  13806182 ttttcattttcacttcaactaataaacataagagaatat 13806144  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 48 - 125
Target Start/End: Complemental strand, 35514623 - 35514546
Alignment:
Q  48 ttttcattttcacttcaactaataaacatcatagaatataagtttaatatttttcgcaccttttccttttacaatttc 125  Q
    |||| |||| ||||||||||||||||||| | |||||||| ||  || ||||||| |||| ||| |||||||||||||    
T  35514623 tttttatttccacttcaactaataaacataagagaatataggtccaacatttttcacaccattttcttttacaatttc 35514546  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 45 - 87
Target Start/End: Original strand, 10195349 - 10195391
Alignment:
Q  45 gtattttcattttcacttcaactaataaacatcatagaatata 87  Q
    ||||||||||||||||||||||||||| |||| ||| ||||||    
T  10195349 gtattttcattttcacttcaactaatagacatgataaaatata 10195391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 251
Target Start/End: Complemental strand, 24962197 - 24962164
Alignment:
Q  218 aacttactagtgtaactaacttttacatctaata 251  Q
    |||||||||| |||||||||||||||||||||||    
T  24962197 aacttactagcgtaactaacttttacatctaata 24962164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 248
Target Start/End: Complemental strand, 40620 - 40563
Alignment:
Q  191 aataagacttatataggcaatgagagcaacttactagtgtaactaacttttacatcta 248  Q
    |||||| ||||||||| |||| |||  |||| |||||||||||| |||||||||||||    
T  40620 aataaggcttatatagtcaattagattaactaactagtgtaacttacttttacatcta 40563  T

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