View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11823_low_10 (Length: 393)
Name: NF11823_low_10
Description: NF11823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11823_low_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 14 - 376
Target Start/End: Original strand, 4095162 - 4095524
Alignment:
| Q |
14 |
catcagattcttttgcttctattatttcaattcagataaccctttttccgaaaaatggtttttctattggaataagcacacaccatgctgttcttgatgg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4095162 |
catcagattcttttgcttctattatttcaattcagataaccctttttccgaaaaatggtttttccattggaataagcacacaccatgctgttcttgatgg |
4095261 |
T |
|
| Q |
114 |
aaaatcttcaaccatgttcgtcaaagcatggtcttctatatgtaaatctcttgaagaagaaacacaatcaccaaatttagagcctttattagaaccattt |
213 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4095262 |
aaaatcttcaaccatgttcatcaaagcatggtcttctatatgtaaatctcttgaagaagaaacacaatcactaaatttagagcctttattagaaccattt |
4095361 |
T |
|
| Q |
214 |
ttggaaaggggagtcatcaaagatccaaatgattttgagaattcgttcattaatacttggaacagaatctcatcacattttgataagagcagtgtgaaaa |
313 |
Q |
| |
|
|||||||||| | | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4095362 |
ttggaaagggaacttattgaagatccaaatgattttgagaattcgttcattaatacttggaacagaatctcatcacattttgataagagcagtgtgaaaa |
4095461 |
T |
|
| Q |
314 |
gcataaagattatgtcaagcatgtttcaaccaatcattaaggatgcggttcgagaaacgtttg |
376 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4095462 |
gcataaagattatgtcaagcatgtttcaaccaatcattaaggatgcggttcgagaaacgtttg |
4095524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 4189109 - 4189224
Alignment:
| Q |
17 |
cagattcttttgcttctattatttcaattcagataaccctttttccgaaaaatggtttttctattggaataagcacacaccatgctgttcttgatggaaa |
116 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
4189109 |
cagattcatctgcttctattatttcaattcagataaccctttttccaaaaagtggtttttccattggaataagcacacaccatgctggtcttgatggaaa |
4189208 |
T |
|
| Q |
117 |
atcttcaaccatgttc |
132 |
Q |
| |
|
||| |||||||||||| |
|
|
| T |
4189209 |
atcatcaaccatgttc |
4189224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 17 - 140
Target Start/End: Original strand, 4192249 - 4192372
Alignment:
| Q |
17 |
cagattcttttgcttctattatttcaattcagataaccctttttccgaaaaatggtttttctattggaataagcacacaccatgctgttcttgatggaaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||| ||| ||| ||||||||||||| ||||||||||||||| |
|
|
| T |
4192249 |
cagattcttttgcttctattatttcagttcagataaccctttttcaaaaaagtggtttttccattagaactagcacacaccatggtgttcttgatggaaa |
4192348 |
T |
|
| Q |
117 |
atcttcaaccatgttcgtcaaagc |
140 |
Q |
| |
|
|||||||||||||||| ||||||| |
|
|
| T |
4192349 |
atcttcaaccatgttcatcaaagc |
4192372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 4196003 - 4196124
Alignment:
| Q |
19 |
gattcttttgcttctattatttcaattcagataaccctttttccgaaaaatggtttttctattggaataagcacacaccatgctgttcttgatggaaaat |
118 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |||||||| ||| ||||||||| |||||||||||||| ||||||||| |||| |||||||||| |
|
|
| T |
4196003 |
gattcttttgcttctattatctcaattcagataaccttttttccggaaagtggtttttccattggaataagcactcaccatgctattctagatggaaaat |
4196102 |
T |
|
| Q |
119 |
cttcaaccatgttcgtcaaagc |
140 |
Q |
| |
|
| |||| ||||||| ||||||| |
|
|
| T |
4196103 |
cctcaatcatgttcatcaaagc |
4196124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 20 - 140
Target Start/End: Original strand, 4233750 - 4233870
Alignment:
| Q |
20 |
attcttttgcttctattatttcaattcagataaccctttttccgaaaaatggtttttctattggaataagcacacaccatgctgttcttgatggaaaatc |
119 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||||| ||| ||||||||| |||||||||||||| || ||||||| ||||||||||||||| |
|
|
| T |
4233750 |
attcttttgcttctattatctcagttcagataaccctttttccagaaagtggtttttccattggaataagcactcatcatgctgctcttgatggaaaatc |
4233849 |
T |
|
| Q |
120 |
ttcaaccatgttcgtcaaagc |
140 |
Q |
| |
|
|||||||||||| ||||||| |
|
|
| T |
4233850 |
ctcaaccatgttcatcaaagc |
4233870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 14 - 140
Target Start/End: Original strand, 4250775 - 4250901
Alignment:
| Q |
14 |
catcagattcttttgcttctattatttcaattcagataaccctttttccgaaaaatggtttttctattggaataagcacacaccatgctgttcttgatgg |
113 |
Q |
| |
|
||||||||||||||||||||||||| ||| | || || |||||||| || || | ||||||| || ||||| ||||| || ||||||||||||||||| |
|
|
| T |
4250775 |
catcagattcttttgcttctattatgtcactccaaatcacccttttcccaaatagtggttttagcatcggaatcagcactcatcatgctgttcttgatgg |
4250874 |
T |
|
| Q |
114 |
aaaatcttcaaccatgttcgtcaaagc |
140 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
4250875 |
aaaatcttcaaccatgttcgtcaaagc |
4250901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 4241538 - 4241638
Alignment:
| Q |
20 |
attcttttgcttctattatttcaattcagataaccctttttccgaaaaatggtttttctattggaataagcacacaccatgctgttcttgatggaaaatc |
119 |
Q |
| |
|
||||||||||||||||||| ||| | || ||||| |||||||| ||| ||||||||| |||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
4241538 |
attcttttgcttctattatctcactccaaataactctttttccaaaacgtggtttttccattggaataagcactcatcatgctgttcttgatggaaaatc |
4241637 |
T |
|
| Q |
120 |
t |
120 |
Q |
| |
|
| |
|
|
| T |
4241638 |
t |
4241638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 68 - 148
Target Start/End: Complemental strand, 4978497 - 4978417
Alignment:
| Q |
68 |
atggtttttctattggaataagcacacaccatgctgttcttgatggaaaatcttcaaccatgttcgtcaaagcatggtctt |
148 |
Q |
| |
|
|||| |||| |||||| |||| |||||||||||| | | |||||||||||||||||||| |||| | ||||||||||||| |
|
|
| T |
4978497 |
atggattttgtattggtataaccacacaccatgcagctgttgatggaaaatcttcaaccttgtttatgaaagcatggtctt |
4978417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 58 - 127
Target Start/End: Original strand, 5525136 - 5525205
Alignment:
| Q |
58 |
tttccgaaaaatggtttttctattggaataagcacacaccatgctgttcttgatggaaaatcttcaacca |
127 |
Q |
| |
|
||||| || |||||||||| |||||||||| ||||||||||||| | | ||||||||||||||||||| |
|
|
| T |
5525136 |
tttccaaacaatggtttttgcattggaataacaacacaccatgctgctttagatggaaaatcttcaacca |
5525205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 148
Target Start/End: Complemental strand, 4995256 - 4995176
Alignment:
| Q |
68 |
atggtttttctattggaataagcacacaccatgctgttcttgatggaaaatcttcaaccatgttcgtcaaagcatggtctt |
148 |
Q |
| |
|
|||| |||| |||||| |||| |||||||||||| | | |||||||||||||||||||| |||| | ||||| ||||||| |
|
|
| T |
4995256 |
atggattttgtattggtataaccacacaccatgcagctgttgatggaaaatcttcaaccttgtttatgaaagcttggtctt |
4995176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 125
Target Start/End: Complemental strand, 4982614 - 4982557
Alignment:
| Q |
68 |
atggtttttctattggaataagcacacaccatgctgttcttgatggaaaatcttcaac |
125 |
Q |
| |
|
|||| |||| |||||| |||| |||||||||||| | | ||||||||||||||||||| |
|
|
| T |
4982614 |
atggattttgtattggtataaccacacaccatgcagctgttgatggaaaatcttcaac |
4982557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University