View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11823_low_11 (Length: 381)

Name: NF11823_low_11
Description: NF11823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11823_low_11
NF11823_low_11
[»] chr1 (9 HSPs)
chr1 (47-373)||(11003285-11003607)
chr1 (146-365)||(11000316-11000532)
chr1 (222-312)||(11009082-11009172)
chr1 (234-315)||(11034495-11034576)
chr1 (216-314)||(10921610-10921708)
chr1 (217-308)||(10975113-10975204)
chr1 (222-308)||(10905207-10905293)
chr1 (225-315)||(10987980-10988070)
chr1 (225-315)||(11019148-11019238)


Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 47 - 373
Target Start/End: Complemental strand, 11003607 - 11003285
Alignment:
Q  47 acattttcttttaaacatggtataaatggtaaacaattatccctctactccctgcctcatcgtctaatctacaatcacagacaga--agaagnnnnnnnc 144  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||       |    
T  11003607 acattttcttttaaacatggtataaatggtcaacaattatccctctactccctgcctcatcgtctaatctacaatcacagacagagaagaagaaaaaaac 11003508  T
Q  145 tttgaggaagtcgtctggagaaaattacctaaaggtgcacaacgacgacgttggttattgtaatagaggatgtctgaataccaaccatgtttacaaagac 244  Q
    |||||||||||||| ||||||||||||||| |||||||||      |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  11003507 tttgaggaagtcgtttggagaaaattacctgaaggtgcac------gacgttggttattgtaatcgaggatgtctgaataccaaccatgtttacaaagac 11003414  T
Q  245 tattgagccatgaaagttcaaatccataaaacatcatacgacgaatatccgtacaagaaatgttgttgttgccaccatgcttaaaatcccaagatgtaag 344  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11003413 tattgagccatgaaagttcaaatccataaaacatcatacgatgaatatccgtacaagaaatgttgttgtttccaccatgcttaaaatcccaagatgtaag 11003314  T
Q  345 aaacatcaactctatacgacactcatctc 373  Q
    |||||||||||||||||||||||||||||    
T  11003313 aaacatcaactctatacgacactcatctc 11003285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 146 - 365
Target Start/End: Complemental strand, 11000532 - 11000316
Alignment:
Q  146 ttgaggaagtcgtctggagaaaattacctaaaggtgcacaacgacgacgttggttattgtaatagaggatgtctgaataccaaccatgtttacaaagact 245  Q
    ||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||    
T  11000532 ttgaggaagtcgtttggagaaaattacctaaacgtgcacaaccacgacgttggttattgtaatcgaggatttctgaataccaaccatgtttacaaaggct 11000433  T
Q  246 attgagccatgaaagttcaaatccataaaacatcatacgacgaatatccgtacaagaaatgttgttgttgccaccatgcttaaaatcccaagatgtaaga 345  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||   |||||||||||| | ||||  |||||||||||||    
T  11000432 attgagccatgaaagttcaaatccataaaacatcatacgacgaatatccgtgcaaaaaatgtt---gttgccaccatgttcaaaaggccaagatgtaaga 11000336  T
Q  346 aacatcaactctatacgaca 365  Q
    ||||||||||||||||||||    
T  11000335 aacatcaactctatacgaca 11000316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 222 - 312
Target Start/End: Original strand, 11009082 - 11009172
Alignment:
Q  222 ataccaaccatgtttacaaagactattgagccatgaaagttcaaatccataaaacatcatacgacgaatatccgtacaagaaatgttgttg 312  Q
    ||||| ||||||||||||  |||| |||||||| |||||||||||||||||| ||||| |||||||||| || ||||||||||||||||||    
T  11009082 ataccgaccatgtttacaccgactgttgagccaagaaagttcaaatccataatacatcctacgacgaatgtctgtacaagaaatgttgttg 11009172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 234 - 315
Target Start/End: Original strand, 11034495 - 11034576
Alignment:
Q  234 tttacaaagactattgagccatgaaagttcaaatccataaaacatcatacgacgaatatccgtacaagaaatgttgttgttg 315  Q
    |||||||| ||| |||||||| ||||||||||||||||||||||||  |||||| |||||||  ||||||||||||||||||    
T  11034495 tttacaaaaactgttgagccaagaaagttcaaatccataaaacatctcacgacggatatccgcgcaagaaatgttgttgttg 11034576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 314
Target Start/End: Original strand, 10921610 - 10921708
Alignment:
Q  216 gtctgaataccaaccatgtttacaaagactattgagccatgaaagttcaaatccataaaacatcatacgacgaatatccgtacaagaaatgttgttgtt 314  Q
    ||||| |||||| |||| |||||||| ||| |||||||| |||||||||||||||||||| |||  |||||| || || || || ||||||||||||||    
T  10921610 gtctgcataccatccatctttacaaaaactgttgagccaagaaagttcaaatccataaaagatctcacgacggatgtctgtgcatgaaatgttgttgtt 10921708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 308
Target Start/End: Original strand, 10975113 - 10975204
Alignment:
Q  217 tctgaataccaaccatgtttacaaagactattgagccatgaaagttcaaatccataaaacatcatacgacgaatatccgtacaagaaatgtt 308  Q
    |||| ||||| |||||| || |||| |||||||||||| |||| ||||||||||||| ||||||||||||| |  ||| | |||||||||||    
T  10975113 tctgcataccgaccatgattgcaaatactattgagccaagaaaattcaaatccataatacatcatacgacggaagtccttgcaagaaatgtt 10975204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 222 - 308
Target Start/End: Original strand, 10905207 - 10905293
Alignment:
Q  222 ataccaaccatgtttacaaagactattgagccatgaaagttcaaatccataaaacatcatacgacgaatatccgtacaagaaatgtt 308  Q
    |||||||||||| ||  ||| |||||||||||| |||| ||||||||||||| ||||||||||||| |  ||| | |||||||||||    
T  10905207 ataccaaccatgattgtaaatactattgagccaagaaaattcaaatccataatacatcatacgacggaagtccttgcaagaaatgtt 10905293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 225 - 315
Target Start/End: Original strand, 10987980 - 10988070
Alignment:
Q  225 ccaaccatgtttacaaagactattgagccatgaaagttcaaatccataaaacatcatacgacgaatatccgtacaagaaatgttgttgttg 315  Q
    |||| ||| ||||||||||||||||||||| || | ||||||||||||| ||||||||||    || ||||| ||||||||||| ||||||    
T  10987980 ccaatcatctttacaaagactattgagccaagagacttcaaatccataagacatcatacggttgatgtccgtgcaagaaatgttattgttg 10988070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 225 - 315
Target Start/End: Original strand, 11019148 - 11019238
Alignment:
Q  225 ccaaccatgtttacaaagactattgagccatgaaagttcaaatccataaaacatcatacgacgaatatccgtacaagaaatgttgttgttg 315  Q
    |||| ||| ||||||||||||||||||||| || | ||||||||||||| ||||||||||    || ||||| ||||||||||| ||||||    
T  11019148 ccaatcatctttacaaagactattgagccaagagacttcaaatccataagacatcatacggttgatgtccgtgcaagaaatgttattgttg 11019238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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