View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11823_low_14 (Length: 334)
Name: NF11823_low_14
Description: NF11823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11823_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 20 - 325
Target Start/End: Complemental strand, 38706923 - 38706625
Alignment:
| Q |
20 |
atcgggacgcaagtagtttaaccaccttaatctacaacttttaccacttctcctcaaacctgtataattaattagttttgtttagaatagattatgagaa |
119 |
Q |
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| T |
38706923 |
atcgggacgcaagtagtttaaccaccttaatctacaacttttaccacttctcctcaaacctgtataattaattagttttgtttagaatagattatgagaa |
38706824 |
T |
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| Q |
120 |
tcaataattaagctattcatgcagctatgtcattataagctaataaataaaagagctagaagaaaatatataaatatatacatgcctgcagaagatgcaa |
219 |
Q |
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| T |
38706823 |
tcaataa----gctattcatgcagctatgtcat---aagctaataaataaaagagctagaagaaaatatataaatatatacatgcctgcagaagatgcaa |
38706731 |
T |
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| Q |
220 |
gggtattccagtgaccttcaccgtgtattgtaatgtaatcaaccagaatggtgtcctcttctaacgtccaaggaccctttcttacccctgtctcattttc |
319 |
Q |
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| T |
38706730 |
gggtattccagtgaccttcaccgtgtattgtaatgtaatcaaccagaatggtgtcctcttctaacgtccaaggaccttttcttacccctgtctcattttc |
38706631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 27633157 - 27633197
Alignment:
| Q |
33 |
tagtttaaccaccttaatctacaacttttaccacttctcct |
73 |
Q |
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| T |
27633157 |
tagttcaaccaccttaacctacagcttttaccacttctcct |
27633197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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