View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11823_low_15 (Length: 328)
Name: NF11823_low_15
Description: NF11823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11823_low_15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 26986205 - 26985886
Alignment:
| Q |
1 |
atccttgaaccctagcccaaggagtactcctccaaagcctaccctcatttccatcctcagaaaccacagtgagcagagtgttgaaatactcacgtagctg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
26986205 |
atccttgaaccctagcccaaggagtactcctccaaagcctaccctcatttccatcctcagaaaccacagtgagcaaagtgttgaaatactcacgtagctg |
26986106 |
T |
|
| Q |
101 |
agtaataatcccatccttgaccctccacacatgcacccaatactcccccacatcttcccatccttcaacaatcaaacggtcacccataacactcctcatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26986105 |
agtaataatcccatccttgaccctccacacatgtacccaatactcccccacatcttcccatccttcaacaatcaaacggtcacccataacactcctcatt |
26986006 |
T |
|
| Q |
201 |
ctccttggcctaaacttgaaactcttttgtgtcgactcaccggtcaacattttcatcatatgttgggaatgtggaggtccatgatacctccattccaatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
26986005 |
ctccttggcctaaacttgaaactcttttgtgtcgactcaccggtcaacattttcatcatatgttggcaatgtggaggtccatgatacctccattccaatt |
26985906 |
T |
|
| Q |
301 |
cttttcctaccacctttgct |
320 |
Q |
| |
|
||||||||||||| |||||| |
|
|
| T |
26985905 |
cttttcctaccacttttgct |
26985886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University