View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11823_low_16 (Length: 325)
Name: NF11823_low_16
Description: NF11823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11823_low_16 |
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| [»] chr1 (9 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 10999886 - 11000213
Alignment:
| Q |
1 |
tcccgaaaagtgtggtgacaataggtacatcttatcatgtgaggacaacgaccaattgattttgtactatggttcatttggaaaatactatgtacaatcg |
100 |
Q |
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| T |
10999886 |
tcccgaaaactgtggtgacaataggtacatcttatcatgtgaggacaacgaccaattgattttgtactatggttcatttggaaaatactatgtacaatcg |
10999985 |
T |
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| Q |
101 |
attaattacaacaactttaccatacgattattggatttcaataatcttggtcactctaattattccctccaacctcatccactaggcttgtataatttca |
200 |
Q |
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| T |
10999986 |
attaattacaacaactttaccatacgattattggatttcaataatcttggtcactctaattattccctccaacctcatccactaggcttgtataatttca |
11000085 |
T |
|
| Q |
201 |
cttcaacgaccatcaatccaagagtcttgccatattcagcgtttgatgattccaatata---ttgttcaactctatgttaaatgtgacatgtcctaaaca |
297 |
Q |
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| T |
11000086 |
cttcaacgaccatcaatccaagagtcttgccatatacagtgtttgatgattacaatatagatttgttcaactctatgttatatgtgacatgtcctaaaca |
11000185 |
T |
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| Q |
298 |
tgtccattattcttcaggtatttacttt |
325 |
Q |
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|||||| ||||||||||||||||||||| |
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| T |
11000186 |
tgtccaatattcttcaggtatttacttt |
11000213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 11002863 - 11003190
Alignment:
| Q |
1 |
tcccgaaaagtgtggtgacaataggtacatcttatcatgtgaggacaacgaccaattgattttgtactatggttcatttggaaaatactatgtacaatcg |
100 |
Q |
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| T |
11002863 |
tcccgaaaactgtggtgacaaaaggtacatcttatcatgtgaggacaacaaccaattgattttgtactatggttcatttggaaaatactatgtacaatca |
11002962 |
T |
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| Q |
101 |
attaattacaacaactttaccatacgattattggatttcaataatcttggtcactctaattattccctccaacctcatccactaggcttgtataatttca |
200 |
Q |
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| T |
11002963 |
attaattacaataacttcactatacgtctattggatttcaatagtcatggttactctaattattccctcccacctcatccactaggcttctatagtttcg |
11003062 |
T |
|
| Q |
201 |
cttcaacgaccatcaatccaagagtcttgccatattcagcgtttgatgattccaatata---ttgttcaactctatgttaaatgtgacatgtcctaaaca |
297 |
Q |
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| T |
11003063 |
attcaaggaccatcaatccaatagccttgccatatagagtgtttggggatcactatatagatttgttcaagtctatgttatatgtgacatgtcccaaaca |
11003162 |
T |
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| Q |
298 |
tgtccattattcttcaggtatttacttt |
325 |
Q |
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| T |
11003163 |
tgtccaatattcttcaggtatttacttt |
11003190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 10988520 - 10988373
Alignment:
| Q |
1 |
tcccgaaaagtgtggtgacaataggtacatcttatcatgtgaggacaacgaccaattgattttgtactatggttcatttggaaaatactatgtacaatcg |
100 |
Q |
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|||| |||| ||||||||||||||||||| | ||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
10988520 |
tcccaaaaaatgtggtgacaataggtacaacctatcatgtgaggacaacaatcaattgattttgtaccatggttcatttggaaaatactatgtacaatca |
10988421 |
T |
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| Q |
101 |
attaattacaacaactttaccatacgattattggatttcaataatctt |
148 |
Q |
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| T |
10988420 |
attaattacaacaactttaccatccaactatcgtatttcaatattctt |
10988373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 11019688 - 11019541
Alignment:
| Q |
1 |
tcccgaaaagtgtggtgacaataggtacatcttatcatgtgaggacaacgaccaattgattttgtactatggttcatttggaaaatactatgtacaatcg |
100 |
Q |
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|||| |||| ||||||||||||||||||| | ||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
11019688 |
tcccaaaaaatgtggtgacaataggtacaacctatcatgtgaggacaacaatcaattgattttgtaccatggttcatttggaaaatactatgtacaatca |
11019589 |
T |
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| Q |
101 |
attaattacaacaactttaccatacgattattggatttcaataatctt |
148 |
Q |
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| T |
11019588 |
attaattacaacaactttaccatccaactatcgtatttcaatattctt |
11019541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 23 - 142
Target Start/End: Complemental strand, 11035037 - 11034918
Alignment:
| Q |
23 |
aggtacatcttatcatgtgaggacaacgaccaattgattttgtactatggttcatttggaaaatactatgtacaatcgattaattacaacaactttacca |
122 |
Q |
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| T |
11035037 |
aggtacaacctatcatgtgaggacaacaatcaattgattttgtaccatgattcatttggaaaatactatgtacaatcaattaattacaacaacttcacca |
11034938 |
T |
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| Q |
123 |
tacgattattggatttcaat |
142 |
Q |
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||||| |||||||||||||| |
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| T |
11034937 |
tacgactattggatttcaat |
11034918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 11 - 142
Target Start/End: Complemental strand, 10905624 - 10905496
Alignment:
| Q |
11 |
tgtggtgacaataggtacatcttatcatgtgaggacaacgaccaattgattttgtactatggttcatttggaaaatactatgtacaatcgattaattaca |
110 |
Q |
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||||||||||| ||||||||||||||||||||||||| | ||||| |||||| ||||||| |||||||||||||| ||||||||||| |||||||||| |
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| T |
10905624 |
tgtggtgacaaaaggtacatcttatcatgtgaggacagc---caattaattttgaactatggatcatttggaaaatattatgtacaatcaattaattaca |
10905528 |
T |
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| Q |
111 |
acaactttaccatacgattattggatttcaat |
142 |
Q |
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|||| || |||||||| |||||||||||||| |
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| T |
10905527 |
acaatttcaccatacggctattggatttcaat |
10905496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 5 - 142
Target Start/End: Complemental strand, 11009651 - 11009505
Alignment:
| Q |
5 |
gaaaagtgtggtgacaataggtacatcttatcatgtgaggacaacgaccaattgattttgtactatggttc------att---tggaaaatactatgtac |
95 |
Q |
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| T |
11009651 |
gaaaagtgtggtgacaaaaggtacatcctatcatgtgaggacaataaccaattgattttgtactatgaatttgaagaataccatggaaaatactatgtac |
11009552 |
T |
|
| Q |
96 |
aatcgattaattacaacaactttaccatacgattattggatttcaat |
142 |
Q |
| |
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|||| ||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
11009551 |
aatcaattaattacaacaacttcaccatacgactattggatttcaat |
11009505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 203
Target Start/End: Complemental strand, 10922202 - 10921999
Alignment:
| Q |
6 |
aaaagtgtggtgacaataggtacatcttatcatgtgaggacaacgaccaattgattttgtactatggttcatttggaaaatac------------tatgt |
93 |
Q |
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| T |
10922202 |
aaaagtgtggtgacaaaagatacatcttatcatgtgaggacaacaaccagttgattttgtactatg---aatttggaaaaaaccatggtaaattttatgt |
10922106 |
T |
|
| Q |
94 |
acaatcgattaattacaacaactttaccatacgattattggatttcaataatcttggtcactctaattattccctccaacctcatccactaggcttgtat |
193 |
Q |
| |
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|||||| |||||||||||||||| || |||||| |||||||| || ||| ||||| ||||||||| | |||||| || ||| |||||||| | ||| |
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| T |
10922105 |
acaatcaattaattacaacaactacactatacgactattggatgtc---aattttggttactctaattttaccctccctccccattcactaggcctctat |
10922009 |
T |
|
| Q |
194 |
aatttcactt |
203 |
Q |
| |
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|||||||||| |
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| T |
10922008 |
aatttcactt |
10921999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 142
Target Start/End: Complemental strand, 10975688 - 10975550
Alignment:
| Q |
13 |
tggtgacaataggtacatcttatcatgtgaggacaacgaccaattgattttgtactat------ggttcattt---ggaaaatactatgtacaatcgatt |
103 |
Q |
| |
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||||||||| ||||| ||||||||||||||||||||| |||||||||| ||||||||| || || |||||||| ||||||||||| ||| |
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| T |
10975688 |
tggtgacaagaggtatatcttatcatgtgaggacaacaaccaattgatcttgtactataaagttgggaaatacaccggaaaatattatgtacaatcaatt |
10975589 |
T |
|
| Q |
104 |
aattacaacaactttaccatacgattattggatttcaat |
142 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||| |
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|
| T |
10975588 |
aattacaacaactttaccatacggctattggatttcaat |
10975550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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