View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11823_low_3 (Length: 520)

Name: NF11823_low_3
Description: NF11823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11823_low_3
NF11823_low_3
[»] chr5 (13 HSPs)
chr5 (19-510)||(40460269-40460762)
chr5 (196-418)||(2275989-2276215)
chr5 (23-92)||(40379060-40379129)
chr5 (212-439)||(36681985-36682216)
chr5 (196-259)||(26806523-26806586)
chr5 (201-259)||(26795459-26795517)
chr5 (196-247)||(39753509-39753560)
chr5 (209-247)||(27786291-27786329)
chr5 (23-57)||(40361708-40361742)
chr5 (55-138)||(40379127-40379222)
chr5 (213-250)||(3604409-3604446)
chr5 (196-236)||(26795603-26795643)
chr5 (196-236)||(26806667-26806707)
[»] chr3 (18 HSPs)
chr3 (196-482)||(44041765-44042055)
chr3 (308-441)||(45215162-45215297)
chr3 (196-258)||(46749325-46749387)
chr3 (196-259)||(85824-85887)
chr3 (201-259)||(10104840-10104898)
chr3 (196-250)||(10225625-10225679)
chr3 (201-247)||(12103361-12103407)
chr3 (201-244)||(10216002-10216045)
chr3 (196-259)||(23697079-23697142)
chr3 (196-259)||(23715534-23715597)
chr3 (196-259)||(23733990-23734053)
chr3 (204-247)||(45926904-45926947)
chr3 (385-418)||(12103187-12103220)
chr3 (196-245)||(23752448-23752497)
chr3 (385-418)||(34292297-34292330)
chr3 (196-236)||(10104984-10105024)
chr3 (196-236)||(10225760-10225800)
chr3 (196-268)||(44701618-44701689)
[»] chr4 (14 HSPs)
chr4 (196-459)||(16653328-16653594)
chr4 (196-438)||(53271983-53272229)
chr4 (277-452)||(44646868-44647046)
chr4 (216-498)||(47301403-47301678)
chr4 (196-250)||(28100538-28100592)
chr4 (201-247)||(37370846-37370892)
chr4 (196-336)||(38230846-38230988)
chr4 (209-250)||(20539019-20539060)
chr4 (199-259)||(53594163-53594223)
chr4 (196-259)||(1848474-1848537)
chr4 (201-247)||(543940-543986)
chr4 (201-250)||(41762059-41762108)
chr4 (196-245)||(42314973-42315022)
chr4 (196-244)||(56397517-56397565)
[»] chr8 (3 HSPs)
chr8 (196-418)||(14061620-14061846)
chr8 (203-414)||(39038909-39039122)
chr8 (196-259)||(43488980-43489043)
[»] scaffold0472 (1 HSPs)
scaffold0472 (279-452)||(1635-1811)
[»] chr2 (11 HSPs)
chr2 (199-450)||(2085622-2085877)
chr2 (279-441)||(15284287-15284454)
chr2 (308-441)||(18176230-18176365)
chr2 (196-329)||(7488005-7488139)
chr2 (196-250)||(36598423-36598477)
chr2 (201-258)||(37981701-37981758)
chr2 (196-259)||(35172586-35172649)
chr2 (196-298)||(2288533-2288635)
chr2 (399-441)||(2288641-2288683)
chr2 (209-265)||(17330796-17330852)
chr2 (196-256)||(18176419-18176479)
[»] chr6 (7 HSPs)
chr6 (196-441)||(5957200-5957452)
chr6 (357-441)||(31609454-31609538)
chr6 (196-357)||(10009487-10009648)
chr6 (201-418)||(708994-709214)
chr6 (196-336)||(7100238-7100380)
chr6 (196-336)||(8794250-8794392)
chr6 (196-246)||(4653372-4653422)
[»] chr1 (11 HSPs)
chr1 (362-452)||(51826586-51826676)
chr1 (290-463)||(42055238-42055413)
chr1 (196-418)||(4289007-4289233)
chr1 (201-259)||(27198350-27198408)
chr1 (281-354)||(43553695-43553769)
chr1 (196-268)||(48203422-48203495)
chr1 (195-247)||(52179650-52179702)
chr1 (362-425)||(19894192-19894255)
chr1 (196-336)||(48194664-48194806)
chr1 (196-336)||(19007448-19007589)
chr1 (385-453)||(28039174-28039242)
[»] chr7 (12 HSPs)
chr7 (318-418)||(41060184-41060286)
chr7 (279-418)||(34115257-34115399)
chr7 (196-452)||(37649445-37649706)
chr7 (207-250)||(21067019-21067062)
chr7 (196-259)||(33474592-33474655)
chr7 (196-336)||(46037218-46037360)
chr7 (196-242)||(46202513-46202559)
chr7 (196-354)||(37042413-37042573)
chr7 (196-259)||(12253338-12253401)
chr7 (196-248)||(9599023-9599075)
chr7 (196-248)||(9826594-9826646)
chr7 (196-248)||(15913369-15913421)


Alignment Details
Target: chr5 (Bit Score: 389; Significance: 0; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 19 - 510
Target Start/End: Complemental strand, 40460762 - 40460269
Alignment:
Q  19 aaacctcccaaatgtgaacatctatgtagctacaccattgccttatggactagtttagtaaaaacttcgaaatttacgtgaagtaaaaatgggttaaagt 118  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40460762 aaacctcccaaatgtgaacatctttgtagctacaccattgctttatggactagtttagtaaaaacttcgaaatttacgtgaagtaaaaatgggttaaagt 40460663  T
Q  119 tatgtaagtccaataagaatacaaataaatcttagtgacattcaatcaagaattttatagattannnnnnngaaggaaagaattttatagaatataaata 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||        |||||||||||||||||||||||||||||    
T  40460662 tatgtaagtccaataagaatacaaataaatcttagtgacattcaatcaagagttttatagatt--ttttttgaaggaaagaattttatagaatataaata 40460565  T
Q  219 aatattgtggtattcaatcaagacaatcaagattgttttttagggcaacagacttaagtagtattcaattaagatttctccaaacttataaatgtctctt 318  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||| |||||||| ||||||||||||||||||||||    
T  40460564 aatattgtggtattcaatcaagacaatcaagattgtttttaagggcaacagaattcagtagtattcaaataagatttttccaaacttataaatgtctctt 40460465  T
Q  319 ggtattcaaaagtatataagttttaataaattcttt--tgtagtagattttgcaagacttttttgttgaaaatacacataacatgctcattcaacaatct 416  Q
    ||||||||||||||||||||||||||||||||||||  |||| |||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||    
T  40460464 ggtattcaaaagtatataagttttaataaattcttttgtgtaatagattttgcgagactttttagttgaaaatacacataacatgttcattcaacaatct 40460365  T
Q  417 catgaaaaaccttgagactttttgaaactttcataatctttttaacatactcctaacatttcttgtctcgtac--cacacacactcataccctttg 510  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  40460364 catgaaaaaccttgaaactttttgagactttcataatctttttaacatactcctaacatttcttgtctcgtaccacacacacactcataccctttg 40460269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 196 - 418
Target Start/End: Complemental strand, 2276215 - 2275989
Alignment:
Q  196 aagaattttatagaatataaataaatattgtggtattcaatcaagacaatcaagattgtttttt-agggcaacagacttaagtagtattcaattaagatt 294  Q
    |||| ||||||| ||| ||||||||| |||||||||||||| || ||||||| |||| |||||| | ||||||| | ||   | |||||||||||| |||    
T  2276215 aagacttttataaaatgtaaataaatcttgtggtattcaattaaaacaatcatgattttttttttaaggcaacaaaattcgttggtattcaattaaaatt 2276116  T
Q  295 tctccaaacttataaat-gtctcttggtattcaaaagtatataagttttaataaattcttttgtagta--gattttgcaagacttttttgttgaaaatac 391  Q
    ||||   |||||| ||| |||| ||| ||||||||||| ||||  |||||||  |||||||||||  |  |||||||  ||| ||||| ||| |||||||    
T  2276115 tctcatgacttatgaattgtctattgatattcaaaagtctatagattttaatggattcttttgtataatggattttgtgagattttttagttaaaaatac 2276016  T
Q  392 acataacatgctcattcaacaatctca 418  Q
    |||| ||||||||||||||||||||||    
T  2276015 acatgacatgctcattcaacaatctca 2275989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 40379060 - 40379129
Alignment:
Q  23 ctcccaaatgtgaacatctatgtagctacaccattgccttatggactagtttagtaaaaacttcgaaatt 92  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||    
T  40379060 ctcccaaatgtgaacatctatgtagctacaccgttgctttatggactagtttagtaaaaacttcaaaatt 40379129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 212 - 439
Target Start/End: Original strand, 36681985 - 36682216
Alignment:
Q  212 ataaataaatattgtggtattcaatcaagacaatcaagattgttt-tttagggcaacagacttaagtagtattcaattaagatttctccaaacttataaa 310  Q
    |||||||||| |  ||||||||||||||||||||||||||| ||| |||| ||||||  | |    | ||||||||| ||||||| | | ||| ||||||    
T  36681985 ataaataaatctcatggtattcaatcaagacaatcaagattttttatttaaggcaaccaaatctcatggtattcaatcaagatttgtaccaacctataaa 36682084  T
Q  311 -tgtctcttggtattcaaaagtatataagttttaataaattcttttgta--gtagattttgcaagacttttttgttgaaaatacacataacatgctcatt 407  Q
     ||||| | ||||||||||| ||  ||  |||| ||  |||||||||||  |||||||||   ||||||||| ||||||||||||||| ||||||| |||    
T  36682085 atgtctataggtattcaaaaataggtagattttgatggattcttttgtacggtagattttatgagactttttagttgaaaatacacatgacatgcttatt 36682184  T
Q  408 caacaatctcatgaaaaaccttgagacttttt 439  Q
    |||||||||||  ||||||||||| |||||||    
T  36682185 caacaatctcacaaaaaaccttgaaacttttt 36682216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 196 - 259
Target Start/End: Complemental strand, 26806586 - 26806523
Alignment:
Q  196 aagaattttatagaatataaataaatattgtggtattcaatcaagacaatcaagattgtttttt 259  Q
    |||| ||||||| ||||||||||||| |||| ||||||||| ||||||||||||| | ||||||    
T  26806586 aagacttttataaaatataaataaatcttgtagtattcaattaagacaatcaagactttttttt 26806523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 259
Target Start/End: Complemental strand, 26795517 - 26795459
Alignment:
Q  201 ttttatagaatataaataaatattgtggtattcaatcaagacaatcaagattgtttttt 259  Q
    ||||||| ||||||||||||| |||| ||||||||| ||||||||||||| | ||||||    
T  26795517 ttttataaaatataaataaatcttgtagtattcaattaagacaatcaagactttttttt 26795459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 247
Target Start/End: Original strand, 39753509 - 39753560
Alignment:
Q  196 aagaattttatagaatataaataaatattgtggtattcaatcaagacaatca 247  Q
    |||| ||||||| |||||||| |||| ||||| |||||||||||||||||||    
T  39753509 aagacttttataaaatataaaaaaatcttgtgatattcaatcaagacaatca 39753560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 209 - 247
Target Start/End: Original strand, 27786291 - 27786329
Alignment:
Q  209 aatataaataaatattgtggtattcaatcaagacaatca 247  Q
    ||||||||||||| |||||||||||||| ||||||||||    
T  27786291 aatataaataaatcttgtggtattcaattaagacaatca 27786329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 23 - 57
Target Start/End: Original strand, 40361708 - 40361742
Alignment:
Q  23 ctcccaaatgtgaacatctatgtagctacaccatt 57  Q
    ||||||||| |||||||||||||||||||||||||    
T  40361708 ctcccaaatatgaacatctatgtagctacaccatt 40361742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 55 - 138
Target Start/End: Original strand, 40379127 - 40379222
Alignment:
Q  55 attgccttatggactagtttagtaaaaacttcgaaattt------------acgtgaagtaaaaatgggttaaagttatgtaagtccaataagaat 138  Q
    ||||| |||||||||||||||||||||||||| ||||||            || ||||||||||| ||||||||||| ||||||||||||| ||||    
T  40379127 attgctttatggactagtttagtaaaaacttcaaaattttacaataaaaaaacctgaagtaaaaacgggttaaagttttgtaagtccaataggaat 40379222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 250
Target Start/End: Complemental strand, 3604446 - 3604409
Alignment:
Q  213 taaataaatattgtggtattcaatcaagacaatcaaga 250  Q
    ||||||||| ||||||||||||||||||||||| ||||    
T  3604446 taaataaatcttgtggtattcaatcaagacaattaaga 3604409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 26795643 - 26795603
Alignment:
Q  196 aagaattttatagaatataaataaatattgtggtattcaat 236  Q
    |||| ||||||| ||||||||||||| ||||||||||||||    
T  26795643 aagacttttataaaatataaataaatcttgtggtattcaat 26795603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 26806707 - 26806667
Alignment:
Q  196 aagaattttatagaatataaataaatattgtggtattcaat 236  Q
    |||| ||||||| ||||||||||||| ||||||||||||||    
T  26806707 aagacttttataaaatataaataaatcttgtggtattcaat 26806667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 2e-44; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 196 - 482
Target Start/End: Complemental strand, 44042055 - 44041765
Alignment:
Q  196 aagaattttatagaatataaataaatattgtggtattcaatcaagacaatcaagattgtttttt-agggcaacagacttaagtagtattcaattaagatt 294  Q
    |||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| || | ||||||  | |   || |||| ||| | |||||    
T  44042055 aagacttttatagaatataaataaatcttgtggtattcaattaagacaatcaagattgtttgttcaaggcaacgaaatctggtggtatccaaatgagatt 44041956  T
Q  295 tctccaaacttataaa-tgtctcttggtattcaaaagtatataagttttaataaattcttttgtagta--gattttgcaagacttttttgttgaaaatac 391  Q
    || ||| ||||||||| |||||||||||||| |||||||| ||  |||||||| |||||||||| | |  |||||    ||||||||| |||||||||||    
T  44041955 tccccagacttataaaatgtctcttggtattgaaaagtatgtagattttaatagattcttttgtggaatggatttcatgagactttttagttgaaaatac 44041856  T
Q  392 acataacatgctcattcaacaatctcatgaaaaaccttgagactttttgaaactttcataatctttttaacatactcctaacatttcttgt 482  Q
    ||||||||| ||| |||||||||||||   |||||| ||||||||| ||| ||||||||||| |||||| ||   || |||||||||||||    
T  44041855 acataacatactctttcaacaatctcaaagaaaaccatgagactttctgagactttcataatttttttagcagggtcgtaacatttcttgt 44041765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 308 - 441
Target Start/End: Complemental strand, 45215297 - 45215162
Alignment:
Q  308 aaatgtctcttggtattcaaaagtatataagttttaataaattcttttgtag--tagattttgcaagacttttttgttgaaaatacacataacatgctca 405  Q
    |||||||| ||||||||||||| | |  |  |||||||| ||||  ||||||  | |||||||  ||||||||| ||| ||||||||| | | |||||||    
T  45215297 aaatgtctattggtattcaaaaatcttgagattttaatagattcaattgtagagtggattttgtgagactttttagttaaaaatacacctgagatgctca 45215198  T
Q  406 ttcaacaatctcatgaaaaaccttgagactttttga 441  Q
    |||||||||||||  |||||||||||||||||||||    
T  45215197 ttcaacaatctcacaaaaaaccttgagactttttga 45215162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 196 - 258
Target Start/End: Original strand, 46749325 - 46749387
Alignment:
Q  196 aagaattttatagaatataaataaatattgtggtattcaatcaagacaatcaagattgttttt 258  Q
    |||| ||||||| ||||||||||||| || ||||||||||| ||||||||||||||| |||||    
T  46749325 aagacttttataaaatataaataaatcttatggtattcaattaagacaatcaagatttttttt 46749387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 196 - 259
Target Start/End: Original strand, 85824 - 85887
Alignment:
Q  196 aagaattttatagaatataaataaatattgtggtattcaatcaagacaatcaagattgtttttt 259  Q
    |||| |||||| |||| ||||||||| ||||| ||||||||||||||||| |||||| ||||||    
T  85824 aagatttttatggaatctaaataaatcttgtgatattcaatcaagacaattaagattttttttt 85887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 259
Target Start/End: Complemental strand, 10104898 - 10104840
Alignment:
Q  201 ttttatagaatataaataaatattgtggtattcaatcaagacaatcaagattgtttttt 259  Q
    ||||||| ||||||||||||| |||| ||||||||| ||||||||||||| | ||||||    
T  10104898 ttttataaaatataaataaatcttgtagtattcaattaagacaatcaagactttttttt 10104840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 250
Target Start/End: Complemental strand, 10225679 - 10225625
Alignment:
Q  196 aagaattttatagaatataaataaatattgtggtattcaatcaagacaatcaaga 250  Q
    |||| ||||||| ||||||||||||| |||| ||||||||| |||||||||||||    
T  10225679 aagacttttataaaatataaataaatcttgtagtattcaattaagacaatcaaga 10225625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 247
Target Start/End: Complemental strand, 12103407 - 12103361
Alignment:
Q  201 ttttatagaatataaataaatattgtggtattcaatcaagacaatca 247  Q
    |||||| |||||||||||||| |||| ||||||||||||||||||||    
T  12103407 ttttattgaatataaataaatcttgtagtattcaatcaagacaatca 12103361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 244
Target Start/End: Complemental strand, 10216045 - 10216002
Alignment:
Q  201 ttttatagaatataaataaatattgtggtattcaatcaagacaa 244  Q
    ||||||| ||||||||||||| |||||||||||||| |||||||    
T  10216045 ttttataaaatataaataaatcttgtggtattcaattaagacaa 10216002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 259
Target Start/End: Original strand, 23697079 - 23697142
Alignment:
Q  196 aagaattttatagaatataaataaatattgtggtattcaatcaagacaatcaagattgtttttt 259  Q
    |||| |||||| |||| |||||||||  |||||||||||||||||||||| |||| | ||||||    
T  23697079 aagacttttattgaatctaaataaatcatgtggtattcaatcaagacaattaagactttttttt 23697142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 259
Target Start/End: Original strand, 23715534 - 23715597
Alignment:
Q  196 aagaattttatagaatataaataaatattgtggtattcaatcaagacaatcaagattgtttttt 259  Q
    |||| |||||| |||| |||||||||  |||||||||||||||||||||| |||| | ||||||    
T  23715534 aagacttttattgaatctaaataaatcatgtggtattcaatcaagacaattaagactttttttt 23715597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 259
Target Start/End: Original strand, 23733990 - 23734053
Alignment:
Q  196 aagaattttatagaatataaataaatattgtggtattcaatcaagacaatcaagattgtttttt 259  Q
    |||| |||||| |||| |||||||||  |||||||||||||||||||||| |||| | ||||||    
T  23733990 aagacttttattgaatctaaataaatcatgtggtattcaatcaagacaattaagactttttttt 23734053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 247
Target Start/End: Complemental strand, 45926947 - 45926904
Alignment:
Q  204 tatagaatataaataaatattgtggtattcaatcaagacaatca 247  Q
    |||| ||||||||||||| |||||||||||||| ||||||||||    
T  45926947 tataaaatataaataaatcttgtggtattcaattaagacaatca 45926904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 418
Target Start/End: Complemental strand, 12103220 - 12103187
Alignment:
Q  385 aaaatacacataacatgctcattcaacaatctca 418  Q
    ||||||||||||||||||||||||||| ||||||    
T  12103220 aaaatacacataacatgctcattcaacgatctca 12103187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 245
Target Start/End: Original strand, 23752448 - 23752497
Alignment:
Q  196 aagaattttatagaatataaataaatattgtggtattcaatcaagacaat 245  Q
    |||| |||||| |||| |||||||||  ||||||||||||||||||||||    
T  23752448 aagacttttattgaatttaaataaatcatgtggtattcaatcaagacaat 23752497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 418
Target Start/End: Complemental strand, 34292330 - 34292297
Alignment:
Q  385 aaaatacacataacatgctcattcaacaatctca 418  Q
    ||||||||||||| ||||||||||||||||||||    
T  34292330 aaaatacacataagatgctcattcaacaatctca 34292297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 10105024 - 10104984
Alignment:
Q  196 aagaattttatagaatataaataaatattgtggtattcaat 236  Q
    |||| ||||||| ||||||||||||| ||||||||||||||    
T  10105024 aagacttttataaaatataaataaatcttgtggtattcaat 10104984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 10225800 - 10225760
Alignment:
Q  196 aagaattttatagaatataaataaatattgtggtattcaat 236  Q
    |||| ||||||| ||||||||||||| ||||||||||||||    
T  10225800 aagacttttataaaatataaataaatcttgtggtattcaat 10225760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 196 - 268
Target Start/End: Original strand, 44701618 - 44701689
Alignment:
Q  196 aagaattttatagaatataaataaatattgtggtattcaatcaagacaatcaagattgttttttagggcaaca 268  Q
    |||| ||||||| ||| |||| |||| ||||||||||||||||| ||||||| || | ||||||| |||||||    
T  44701618 aagacttttataaaatgtaaacaaatcttgtggtattcaatcaaaacaatcatgact-ttttttaaggcaaca 44701689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 2e-35; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 196 - 459
Target Start/End: Original strand, 16653328 - 16653594
Alignment:
Q  196 aagaattttatagaatataaataaatattgtggtattcaatcaagacaatcaagattgtttttt-agggcaacagacttaagtagtattcaattaagatt 294  Q
    |||||||||||| |||||| |||||| |||| ||||||||| ||||||||||||||||||| || | ||||||  | |   ||  ||||||| | |||||    
T  16653328 aagaattttataaaatatacataaattttgttgtattcaattaagacaatcaagattgtttgttcatggcaacgaaatctggtgatattcaaatgagatt 16653427  T
Q  295 tctccaaacttataaa-tgtctcttggtattcaaaagtatataagttttaataaattcttttgt--agtagattttgcaagacttttttgttgaaaatac 391  Q
    || || |||||||||| |||||||||||||| |||||| ||||| |||||||||||||||||||  |||  |||||   |||||||||  || ||||||     
T  16653428 tcccctaacttataaaatgtctcttggtattaaaaagtttataaattttaataaattcttttgtagagtgaattttatgagactttttacttaaaaatat 16653527  T
Q  392 acataacatgctcattcaacaatctcatgaaaaaccttgagactttttgaaactttcataatcttttt 459  Q
    ||||||||| ||||||||||||| |||    ||||||||||||||||||| || |||||||| |||||    
T  16653528 acataacatactcattcaacaatgtcacattaaaccttgagactttttgagac-ttcataatattttt 16653594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 196 - 438
Target Start/End: Original strand, 53271983 - 53272229
Alignment:
Q  196 aagaattttatagaatataaataaatattgtggtattcaatcaagacaatcaagattgtttttt-agggcaacagacttaagtagtattcaattaagatt 294  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||||||| | ||| || ||||||||  | |   || |||||||| | ||| |    
T  53271983 aagacttttatataatataaataaatattgtggtattcaatcaagacaatcaagactttttattcagggcaacgaaatccggtggtattcaaatgagact 53272082  T
Q  295 tctccaaacttataaa-tgtctcttggtattcaaaagtatataagttttaataaattcttttgt--agtagattttgcaagacttttttgttgaaaatac 391  Q
    |   |  ||||||||| ||||| |||||||||||||||||| |  |||||||  |||||||| |  ||| |||||||  ||||||||| | | |||||||    
T  53272083 ttggctgacttataaaatgtctattggtattcaaaagtatacatattttaatggattcttttatggagtggattttgtgagactttttagctaaaaatac 53272182  T
Q  392 acataacatgctcattcaacaatctcatgaaaaaccttgagactttt 438  Q
    |||||||||||| ||||||||||||||  || | |||||||||||||    
T  53272183 acataacatgcttattcaacaatctcacaaatatccttgagactttt 53272229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 277 - 452
Target Start/End: Original strand, 44646868 - 44647046
Alignment:
Q  277 tagtattcaattaagatttctccaaacttataaa-tgtctcttggtattcaaaagtatataagttttaataaattcttttgtagtag--attttgcaaga 373  Q
    ||||||||||||||||||| | | ||||| |||| ||||| ||||||||||||| | |  |  ||||||| ||||||||| ||| |   |||||  ||||    
T  44646868 tagtattcaattaagatttgtaccaacttttaaaatgtctattggtattcaaaaatctgcagattttaatgaattcttttatagaatgaattttataaga 44646967  T
Q  374 cttttttgttgaaaatacacataacatgctcattcaacaatctcatgaaaaaccttgagactttttgaaactttcataa 452  Q
    |||||| ||| ||||||||||| |||||||||||||| |||||||   |||| ||||| ||||||||| || |||||||    
T  44646968 ctttttagttaaaaatacacatgacatgctcattcaagaatctcacataaaatcttgaaactttttgagacattcataa 44647046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 216 - 498
Target Start/End: Original strand, 47301403 - 47301678
Alignment:
Q  216 ataaatattgtggtattcaatcaagacaatcaagattgttt-tttagggcaacagacttaagtagtattcaattaagatttctccaaacttat-aaatgt 313  Q
    |||||| |||||||||||||| ||||||||||||||||||| || | |||||   | ||  || |||||||| | ||||||  || ||||||| ||||||    
T  47301403 ataaattttgtggtattcaattaagacaatcaagattgtttattcaaggcaatgaaattcggtggtattcaaatgagattttccctaacttataaaatgt 47301502  T
Q  314 ctcttggtattcaaaagtatataagttttaataaa--ttcttttgtagtagattttgcaagacttttttgttgaaaatacacataacatgctcattcaac 411  Q
    || ||| ||| ||||||||| ||  |||||||| |  || ||||| | || ||||||  | ||||||| ||||||||||||||||||||  | | |||||    
T  47301503 ct-ttgatatccaaaagtatgtagattttaatagatttttttttggaataaattttgtgaaactttttagttgaaaatacacataacatatttaatcaac 47301601  T
Q  412 aatctcatgaaaaaccttgagactttttgaaactttcataatctttttaacatactcctaacatttcttgtctcgtaccacacacac 498  Q
    |||||||| ||||| || |||          ||||||||||| |||||| || |||| |||||||||||||||  ||||||||||||    
T  47301602 aatctcataaaaaatctcgag----------actttcataatttttttagcacactcataacatttcttgtcttataccacacacac 47301678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 196 - 250
Target Start/End: Complemental strand, 28100592 - 28100538
Alignment:
Q  196 aagaattttatagaatataaataaatattgtggtattcaatcaagacaatcaaga 250  Q
    |||| ||||||| ||||||||||||| || |||||||||||||||||||||||||    
T  28100592 aagacttttataaaatataaataaatcttatggtattcaatcaagacaatcaaga 28100538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 247
Target Start/End: Complemental strand, 37370892 - 37370846
Alignment:
Q  201 ttttatagaatataaataaatattgtggtattcaatcaagacaatca 247  Q
    ||||||| ||||||||||||| |||||||||||||| ||||||||||    
T  37370892 ttttataaaatataaataaatcttgtggtattcaattaagacaatca 37370846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 336
Target Start/End: Original strand, 38230846 - 38230988
Alignment:
Q  196 aagaattttatagaatataaataaatattgtggtattcaatcaagacaatcaaga-ttgttttttagggcaacagacttaagtagtattcaattaagatt 294  Q
    |||| ||||||| ||| |||| |||| ||||||||||||||||||||||||| || || ||||||| ||||||| | |    | |||||||||| |||||    
T  38230846 aagacttttataaaatttaaacaaatcttgtggtattcaatcaagacaatcatgactttttttttaaggcaacaaaatccgttggtattcaattgagatt 38230945  T
Q  295 tctccaaacttat-aaatgtctcttggtattcaaaagtatata 336  Q
    ||||   |||||| || ||||  ||||||||||||||| ||||    
T  38230946 tctcatgacttatgaattgtccattggtattcaaaagtctata 38230988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 209 - 250
Target Start/End: Original strand, 20539019 - 20539060
Alignment:
Q  209 aatataaataaatattgtggtattcaatcaagacaatcaaga 250  Q
    ||||||||||||| ||||||||||||||||||||||| ||||    
T  20539019 aatataaataaatcttgtggtattcaatcaagacaattaaga 20539060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 259
Target Start/End: Original strand, 53594163 - 53594223
Alignment:
Q  199 aattttatagaatataaataaatattgtggtattcaatcaagacaatcaagattgtttttt 259  Q
    ||||||||| ||||||||||||| |||||||||||||| || ||||||  |||| ||||||    
T  53594163 aattttataaaatataaataaatcttgtggtattcaattaaaacaatcgtgattttttttt 53594223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 259
Target Start/End: Complemental strand, 1848537 - 1848474
Alignment:
Q  196 aagaattttatagaatataaataaatattgtggtattcaatcaagacaatcaagattgtttttt 259  Q
    |||| ||||||| ||||||||||||| |||||||||||||| || | |||||||| | ||||||    
T  1848537 aagacttttataaaatataaataaatcttgtggtattcaattaaaaaaatcaagactttttttt 1848474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 201 - 247
Target Start/End: Original strand, 543940 - 543986
Alignment:
Q  201 ttttatagaatataaataaatattgtggtattcaatcaagacaatca 247  Q
    |||||| ||||||||| ||||  ||||||||||||||||||||||||    
T  543940 ttttattgaatataaagaaattatgtggtattcaatcaagacaatca 543986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 250
Target Start/End: Original strand, 41762059 - 41762108
Alignment:
Q  201 ttttatagaatataaataaatattgtggtattcaatcaagacaatcaaga 250  Q
    ||||||| ||||||||||| | |||||||||||||  |||||||||||||    
T  41762059 ttttataaaatataaataagtcttgtggtattcaactaagacaatcaaga 41762108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 245
Target Start/End: Original strand, 42314973 - 42315022
Alignment:
Q  196 aagaattttatagaatataaataaatattgtggtattcaatcaagacaat 245  Q
    |||| |||||| |||| ||||||||| |||||||||||||| ||||||||    
T  42314973 aagatttttatggaatctaaataaatcttgtggtattcaatgaagacaat 42315022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 196 - 244
Target Start/End: Original strand, 56397517 - 56397565
Alignment:
Q  196 aagaattttatagaatataaataaatattgtggtattcaatcaagacaa 244  Q
    |||| |||||| |||| ||||||||| ||||||||||||||||| ||||    
T  56397517 aagacttttatggaatctaaataaattttgtggtattcaatcaaaacaa 56397565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 4e-30; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 196 - 418
Target Start/End: Original strand, 14061620 - 14061846
Alignment:
Q  196 aagaattttatagaatataaataaatattgtggtattcaatcaagacaatcaagattgtttttt-agggcaacagacttaagtagtattcaattaagatt 294  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||||| | ||| || || |||||  | ||  || |||||||| | ||| |    
T  14061620 aagatttttatagaatataaataaatcttgtggtattcaatcaagacaatcaagactttttattcagtgcaacgaaattcggtggtattcaaatgagact 14061719  T
Q  295 tctccaaacttataaa-tgtctcttggtattcaaaagtatataagttttaataaattcttttgtag--tagattttgcaagacttttttgttgaaaatac 391  Q
    |   |  ||||||||| ||||| |||||||||||||||||| || |||||||  |||||||| |||  | |||||||  ||||||||| | | |||||||    
T  14061720 ttggccgacttataaaatgtctgttggtattcaaaagtatacaaattttaatggattcttttatagagtggattttgtgagactttttagctaaaaatac 14061819  T
Q  392 acataacatgctcattcaacaatctca 418  Q
    |||||||||||| ||||||||||||||    
T  14061820 acataacatgcttattcaacaatctca 14061846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 203 - 414
Target Start/End: Complemental strand, 39039122 - 39038909
Alignment:
Q  203 ttatagaatataaataaatattgtggtattcaatcaagacaatcaagattgttt-tttagggcaacagacttaagtagtattcaattaagatttctccaa 301  Q
    ||||||||||||||||||| |  ||||||||||||||||||||||||||| ||| || | ||||||  | |    | ||||||||||||||||  | | |    
T  39039122 ttatagaatataaataaatcta-tggtattcaatcaagacaatcaagattttttattcaaggcaaccaaatctcttggtattcaattaagattcgtacca 39039024  T
Q  302 acttataaatgtctcttggtattcaaaagtatataagttttaataaattcttttg--tagtagattttgcaagacttttttgtt--gaaaatacacataa 397  Q
    |||||||||   || ||||||||||||| | ||||| |||||||  |||||||||  || |  ||||||  ||||||||| |||   ||||||||||| |    
T  39039023 acttataaa--actattggtattcaaaaatctataaattttaatggattcttttgtataatgaattttgtgagactttttagttaaaaaaatacacatga 39038926  T
Q  398 catgctcattcaacaat 414  Q
     ||||||||||||||||    
T  39038925 aatgctcattcaacaat 39038909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 259
Target Start/End: Original strand, 43488980 - 43489043
Alignment:
Q  196 aagaattttatagaatataaataaatattgtggtattcaatcaagacaatcaagattgtttttt 259  Q
    |||| |||||| |||| ||||||||| |||| |||||||||||||||||| |||| | ||||||    
T  43488980 aagacttttatggaatctaaataaatcttgtagtattcaatcaagacaattaagactttttttt 43489043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 279 - 452
Target Start/End: Complemental strand, 1811 - 1635
Alignment:
Q  279 gtattcaattaagatttctccaaacttataaa-tgtctcttggtattcaaaagtatataagttttaataaattcttttgtagta--gattttgcaagact 375  Q
    ||||||||||||||||| | | |||||||||| ||||| ||||||||||||| | |  |  |||||||  |||||||||||| |  |||||||  |||||    
T  1811 gtattcaattaagatttgtaccaacttataaaatgtctattggtattcaaaaatctgcagattttaatggattcttttgtagaatggattttgtgagact 1712  T
Q  376 tttttgttgaaaatacacataacatgctcattcaacaatctcatgaaaaaccttgagactttttgaaactttcataa 452  Q
    |||| ||| ||||||||| | ||||||| ||||||||||||||  |||||||||||||||||||||||| |||||||    
T  1711 ttttagttaaaaatacacttgacatgctaattcaacaatctcacaaaaaaccttgagactttttgaaacattcataa 1635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 6e-29; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 199 - 450
Target Start/End: Original strand, 2085622 - 2085877
Alignment:
Q  199 aattttatagaatataaataaatattgtggtattcaatcaagacaatcaagattgtttttt-agggcaac-agacttaagtagtattcaattaagatttc 296  Q
    ||||||||| ||||| ||||||| ||||| |||||||| ||||||||||| |||||||||| ||  |||| ||| ||| || |||||||| | ||||||     
T  2085622 aattttatataatatgaataaatcttgtgatattcaattaagacaatcaaaattgttttttcagaacaacgaga-ttaggtggtattcaaatgagatttt 2085720  T
Q  297 tccaaacttataaa-tgtctcttggtattcaaaagtatataagttttaataaattctttt--gtagtagattttgcaagacttttttgttgaaaatacac 393  Q
     || |||||||||| ||||||||| ||||||||||||| ||  |||||||| ||| ||||  | | | |||||||  |||||||||  ||||||||||||    
T  2085721 ccctaacttataaaatgtctcttgatattcaaaagtatgtagattttaatagattattttacggaatggattttgtgagactttttatttgaaaatacac 2085820  T
Q  394 ataacatgctcattcaacaatctcatgaaaaaccttgagactttttgaaactttcat 450  Q
    || | ||| ||| |||||||||||||  ||||||||| |||||||| | ||||||||    
T  2085821 atgatatgttcaatcaacaatctcatagaaaaccttgtgactttttaagactttcat 2085877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 279 - 441
Target Start/End: Complemental strand, 15284454 - 15284287
Alignment:
Q  279 gtattcaattaagatttctccaaacttataaat-gtctcttggtatt-caaaagtatataagttttaataaattcttttgtagta--gattttgcaag-a 373  Q
    ||||||||||||||||||||   |||||| ||| |||| |||||||| ||||||| ||||  |||||||  |||||||||||  |  |||||||  || |    
T  15284454 gtattcaattaagatttctcatgacttatgaattgtctattggtattacaaaagtttatagattttaatggattcttttgtacaatggattttgtgagta 15284355  T
Q  374 cttttttgttgaaaatacacataacatgctcattcaacaatctcatgaaaaaccttgagactttttga 441  Q
    |||||| ||| ||||||||||| ||||||||||||||||||||||  ||||||||| |||||||||||    
T  15284354 ctttttagttaaaaatacacatgacatgctcattcaacaatctcacaaaaaaccttaagactttttga 15284287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 308 - 441
Target Start/End: Complemental strand, 18176365 - 18176230
Alignment:
Q  308 aaatgtctcttggtattcaaaagtatataagttttaataaattcttttgtag--tagattttgcaagacttttttgttgaaaatacacataacatgctca 405  Q
    |||||||| ||||||||||||| | |  |  |||||||  ||||| ||||||  | |||||||  ||||||||| ||| ||||||||||| | |||||||    
T  18176365 aaatgtctattggtattcaaaattcttgagattttaatggattctattgtagagtggattttgtgagactttttagttaaaaatacacatgatatgctca 18176266  T
Q  406 ttcaacaatctcatgaaaaaccttgagactttttga 441  Q
    |||||||||||||  |||||||||||||||||||||    
T  18176265 ttcaacaatctcacaaaaaaccttgagactttttga 18176230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 196 - 329
Target Start/End: Complemental strand, 7488139 - 7488005
Alignment:
Q  196 aagaattttatagaatataaataaatattgtggtattcaatcaagacaatcaagattgttttttagggcaacagacttaagtagtattcaattaagattt 295  Q
    |||| ||||||  ||| ||||||||| ||||||||||||||||||||||| |||| | ||||||| | || || | ||   | |||||||||||||||||    
T  7488139 aagacttttatgaaatctaaataaatcttgtggtattcaatcaagacaattaagacttttttttaagacatcaaaattcgttggtattcaattaagattt 7488040  T
Q  296 ctccaaacttat-aaatgtctcttggtattcaaaa 329  Q
    ||   ||||||| ||||||||| ||||||| ||||    
T  7488039 ctaagaacttataaaatgtctcgtggtattgaaaa 7488005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 196 - 250
Target Start/End: Complemental strand, 36598477 - 36598423
Alignment:
Q  196 aagaattttatagaatataaataaatattgtggtattcaatcaagacaatcaaga 250  Q
    |||| ||||||| ||| ||||||||||||||||||||||||||||| ||||||||    
T  36598477 aagacttttataaaatttaaataaatattgtggtattcaatcaagataatcaaga 36598423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 37981701 - 37981758
Alignment:
Q  201 ttttatagaatataaataaatattgtggtattcaatcaagacaatcaagattgttttt 258  Q
    ||||||| ||||||||||||| |||||||||||||| |||||||||| |||| |||||    
T  37981701 ttttataaaatataaataaattttgtggtattcaattaagacaatcatgatttttttt 37981758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 196 - 259
Target Start/End: Complemental strand, 35172649 - 35172586
Alignment:
Q  196 aagaattttatagaatataaataaatattgtggtattcaatcaagacaatcaagattgtttttt 259  Q
    |||| |||||| |||| ||||||||| ||||||||||||||||||||||| |||| | ||||||    
T  35172649 aagacttttatggaatctaaataaatcttgtggtattcaatcaagacaattaagactttttttt 35172586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 298
Target Start/End: Original strand, 2288533 - 2288635
Alignment:
Q  196 aagaattttatagaatataaataaatattgtggtattcaatcaagacaatcaagattgttttttagggcaacagacttaagtagtattcaattaagattt 295  Q
    |||| ||||||| ||| |||| |||| |||||||||||||| |||||||||| || | ||||||| ||||||| | |    | |||||||||||||||||    
T  2288533 aagacttttataaaatgtaaacaaatcttgtggtattcaattaagacaatcatgacttttttttaaggcaacaaaatccgttggtattcaattaagattt 2288632  T
Q  296 ctc 298  Q
    |||    
T  2288633 ctc 2288635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 399 - 441
Target Start/End: Original strand, 2288641 - 2288683
Alignment:
Q  399 atgctcattcaacaatctcatgaaaaaccttgagactttttga 441  Q
    ||||||||||||||||||||  ||||||||||| |||||||||    
T  2288641 atgctcattcaacaatctcacaaaaaaccttgaaactttttga 2288683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 265
Target Start/End: Complemental strand, 17330852 - 17330796
Alignment:
Q  209 aatataaataaatattgtggtattcaatcaagacaatcaagattgttttttagggca 265  Q
    |||||||| |||| ||| ||||||||||||||||||||| || | ||||||| ||||    
T  17330852 aatataaacaaatcttgaggtattcaatcaagacaatcatgacttttttttaaggca 17330796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 196 - 256
Target Start/End: Complemental strand, 18176479 - 18176419
Alignment:
Q  196 aagaattttatagaatataaataaatattgtggtattcaatcaagacaatcaagattgttt 256  Q
    |||| ||||||| || |||||||||| |  ||||||| ||||||||||||||||||| |||    
T  18176479 aagacttttataaaacataaataaatctcatggtattgaatcaagacaatcaagatttttt 18176419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 196 - 441
Target Start/End: Original strand, 5957200 - 5957452
Alignment:
Q  196 aagaattttatagaatataaataaatattgtggtattcaatcaagacaatcaaga----ttgttttttagggcaacagacttaagtagtattcaattaag 291  Q
    |||| ||||||| ||| |||| |||| |||||||||||||| |||||||||| ||    || ||||||| ||||||| | |    | |||||||||||||    
T  5957200 aagacttttataaaatgtaaacaaatcttgtggtattcaattaagacaatcatgacttttttttttttaaggcaacaaaatccgttggtattcaattaag 5957299  T
Q  292 atttctccaaacttataaat-gtctcttggtattcaaaagtatataagttttaataaattcttttgtagta--gattttgcaagacttttttgttgaaaa 388  Q
    |||||||   |||||| ||| |||| ||||||||||||||| ||||  |||||||| ||| ||| |||  |  |||||||  ||||||||| ||| ||||    
T  5957300 atttctcatgacttatgaattgtctattggtattcaaaagtctatagattttaatatattttttcgtataatggattttgtgagactttttagttaaaaa 5957399  T
Q  389 tacacataacatgctcattcaacaatctcatgaaaaaccttgagactttttga 441  Q
    ||||||| | |||||||||||| |||||||  |||||||||||||||||||||    
T  5957400 tacacatgatatgctcattcaataatctcacaaaaaaccttgagactttttga 5957452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 357 - 441
Target Start/End: Complemental strand, 31609538 - 31609454
Alignment:
Q  357 tagtagattttgcaagacttttttgttgaaaatacacataacatgctcattcaacaatctcatgaaaaaccttgagactttttga 441  Q
    |||| |||||||  ||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  31609538 tagtggattttgtgagactttttagttgaaaatacacatgacatgctcattcaacaatctcataaaaaaccttgagactttttga 31609454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 196 - 357
Target Start/End: Complemental strand, 10009648 - 10009487
Alignment:
Q  196 aagaattttatagaatataaataaatattgtggtattcaatcaagacaatcaagattgttttttagggcaacagacttaagtagtattcaattaagattt 295  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||| | ||||||  | |   || |||||||  ||||||||    
T  10009648 aagatttttatagaatataaataaatcttgtggtattcaatcaagataatcaatattgtttttca-ggcaacgaaatctggtggtattcagataagattt 10009550  T
Q  296 ctccaaacttat-aaatgtctcttggtattcaaaagtatataagttttaataaattcttttgt 357  Q
     ||| ||||||| |||||||| |||||| |||||||||| ||  |||||||| ||||||||||    
T  10009549 ttcctaacttataaaatgtcttttggtagtcaaaagtatttagattttaatagattcttttgt 10009487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 201 - 418
Target Start/End: Original strand, 708994 - 709214
Alignment:
Q  201 ttttatagaatataaataaatattgtggtattcaatcaagacaatcaagattgttttttagggcaacagacttaagtagtattcaattaagatttctcca 300  Q
    ||||||| ||| ||||||||| ||||||||||||||||||||||||| || | ||||||  ||||||| | |    | |||||||||| | |||||||      
T  708994 ttttataaaatgtaaataaatcttgtggtattcaatcaagacaatcatgacttttttttgaggcaacaaaatccgttggtattcaattgaaatttctcat 709093  T
Q  301 aacttat-aaatgtctcttggtattcaaaagtatataagttttaataaattctt--ttgtagtagattttgcaagacttttttgttgaaaatacacataa 397  Q
     |||||| || ||||| ||||||||||||||| ||||  |||| ||  ||||||   |||| | |||||||  ||||||||| ||| |||||| | ||||    
T  709094 gacttatgaattgtctattggtattcaaaagtctatagattttgatggattcttggatgtaatggattttgtgagactttttagttaaaaatataaataa 709193  T
Q  398 catgctcattcaacaatctca 418  Q
     |  ||||| |||||||||||    
T  709194 tactctcatccaacaatctca 709214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 336
Target Start/End: Original strand, 7100238 - 7100380
Alignment:
Q  196 aagaattttatagaatataaataaatattgtggtattcaatcaagacaatcaaga-ttgttttttagggcaacagacttaagtagtattcaattaagatt 294  Q
    |||| ||||||| ||| |||| |||| ||||||||||||||||||||||||| || || ||||||| ||||||| | |    | |||||||||| |||||    
T  7100238 aagacttttataaaatctaaacaaatcttgtggtattcaatcaagacaatcatgactttttttttaaggcaacaaaatccgttggtattcaattgagatt 7100337  T
Q  295 tctccaaacttat-aaatgtctcttggtattcaaaagtatata 336  Q
    ||||   |||||| || ||||  ||||||||||||||| ||||    
T  7100338 tctcatgacttatgaattgtccattggtattcaaaagtctata 7100380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 336
Target Start/End: Complemental strand, 8794392 - 8794250
Alignment:
Q  196 aagaattttatagaatataaataaatattgtggtattcaatcaagacaatcaaga-ttgttttttagggcaacagacttaagtagtattcaattaagatt 294  Q
    |||| ||||||| ||| |||| |||| ||||||||||||||||||||||||| || || ||||||| ||||||| | |    | |||||||||| |||||    
T  8794392 aagacttttataaaatctaaacaaatcttgtggtattcaatcaagacaatcatgactttttttttaaggcaacaaaatccgttggtattcaattgagatt 8794293  T
Q  295 tctccaaacttat-aaatgtctcttggtattcaaaagtatata 336  Q
    ||||   |||||| || ||||  ||||||||||||||| ||||    
T  8794292 tctcatgacttatgaattgtccattggtattcaaaagtctata 8794250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 196 - 246
Target Start/End: Original strand, 4653372 - 4653422
Alignment:
Q  196 aagaattttatagaatataaataaatattgtggtattcaatcaagacaatc 246  Q
    |||| ||||||| ||| ||||||||| |||||||||||||| |||||||||    
T  4653372 aagacttttataaaatgtaaataaatcttgtggtattcaattaagacaatc 4653422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 362 - 452
Target Start/End: Complemental strand, 51826676 - 51826586
Alignment:
Q  362 gattttgcaagacttttttgttgaaaatacacataacatgctcattcaacaatctcatgaaaaaccttgagactttttgaaactttcataa 452  Q
    |||||||  ||||||||| ||| ||||||||||| | ||||||||||||||||||||  ||||||||||||||||||||| || |||||||    
T  51826676 gattttgtgagactttttagttaaaaatacacatgaaatgctcattcaacaatctcacaaaaaaccttgagactttttgagacattcataa 51826586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 290 - 463
Target Start/End: Original strand, 42055238 - 42055413
Alignment:
Q  290 agatttctccaaacttataaa-tgtctcttggtattcaaaagtatataagttttaataaattcttttgt--agtagattttgcaagacttttttgttgaa 386  Q
    ||||||| || |||||||||| ||||||||  ||||||||  ||| ||  |||||||| |||||||| |  ||| |||||||||| | ||||| ||| ||    
T  42055238 agatttcccctaacttataaaatgtctcttcatattcaaat-tatgtagattttaatagattcttttatggagtggattttgcaaaaatttttagttaaa 42055336  T
Q  387 aatacacataacatgctcattcaacaatctcatgaaaaaccttgagactttttgaaactttcataatctttttaaca 463  Q
    ||||||||||| || |||||||||||||||||  ||||||||  ||||||||| ||||||  |||||  ||||||||    
T  42055337 aatacacataaaatactcattcaacaatctcaaaaaaaacctcaagactttttaaaacttctataattattttaaca 42055413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 196 - 418
Target Start/End: Original strand, 4289007 - 4289233
Alignment:
Q  196 aagaattttatagaatataaataaatattgtggtattcaatcaagacaatcaaga-ttgttttttagggcaacagacttaagtagtattcaattaagatt 294  Q
    |||| |||||||||||||||||||||  ||||||||||||||||||||||||||| || || || ||||||||  | ||   | |||||||| | ||| |    
T  4289007 aagacttttatagaatataaataaatcatgtggtattcaatcaagacaatcaagactttttattcagggcaacgaaattcgatggtattcaaatgagact 4289106  T
Q  295 tctccaaacttat-aaatgtctcttggtattcaaaagtatataagttttaataaattcttt--tgtagtagattttgcaagacttttttgttgaaaatac 391  Q
    |   |  |||||| |||||| |  ||||||||||||||||| |  |||||||  |||||||  || ||| |||||||  ||| ||||| | | |||||||    
T  4289107 ttggctgacttataaaatgtttgctggtattcaaaagtatacagattttaatggattcttttatggagtggattttgtgagaatttttagctaaaaatac 4289206  T
Q  392 acataacatgctcattcaacaatctca 418  Q
    |||||| ||||| ||||||||||||||    
T  4289207 acataagatgcttattcaacaatctca 4289233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 201 - 259
Target Start/End: Original strand, 27198350 - 27198408
Alignment:
Q  201 ttttatagaatataaataaatattgtggtattcaatcaagacaatcaagattgtttttt 259  Q
    ||||||| ||||||||||||| |||||||||||||| |||||||||| |||| ||||||    
T  27198350 ttttataaaatataaataaatcttgtggtattcaattaagacaatcatgattctttttt 27198408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 281 - 354
Target Start/End: Original strand, 43553695 - 43553769
Alignment:
Q  281 attcaattaagatttctccaaacttataaat-gtctcttggtattcaaaagtatataagttttaataaattcttt 354  Q
    |||||||| |||||||||  ||||||||||| ||||||||||||| |||| || |||| ||||||||||||||||    
T  43553695 attcaattgagatttctcacaacttataaattgtctcttggtattaaaaaatacataaattttaataaattcttt 43553769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 196 - 268
Target Start/End: Original strand, 48203422 - 48203495
Alignment:
Q  196 aagaattttatagaatataaataaatattgtggtattcaatcaagacaatcaaga-ttgttttttagggcaaca 268  Q
    |||| ||||||| |||||||| |||| ||||||||||||||||||||||||| || || ||||||| |||||||    
T  48203422 aagacttttataaaatataaacaaatcttgtggtattcaatcaagacaatcatgactttttttttaaggcaaca 48203495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 195 - 247
Target Start/End: Complemental strand, 52179702 - 52179650
Alignment:
Q  195 aaagaattttatagaatataaataaatattgtggtattcaatcaagacaatca 247  Q
    ||||| ||||||| ||||||||||||| |||||||||||||| ||||||||||    
T  52179702 aaagacttttataaaatataaataaatcttgtggtattcaattaagacaatca 52179650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 362 - 425
Target Start/End: Original strand, 19894192 - 19894255
Alignment:
Q  362 gattttgcaagacttttttgttgaaaatacacataacatgctcattcaacaatctcatgaaaaa 425  Q
    ||||||| || ||||||| ||||||||||||| | ||||| ||||||||||||| |||||||||    
T  19894192 gattttgtaaaactttttagttgaaaatacacgtgacatgatcattcaacaatcacatgaaaaa 19894255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 336
Target Start/End: Original strand, 48194664 - 48194806
Alignment:
Q  196 aagaattttatagaatataaataaatattgtggtattcaatcaagacaatcaaga-ttgttttttagggcaacagacttaagtagtattcaattaagatt 294  Q
    |||| ||||||| ||| |||| |||| ||||||||||||||||||||||||| || || ||||||| ||||||| | |    | |||||||||| |||||    
T  48194664 aagacttttataaaatctaaacaaatcttgtggtattcaatcaagacaatcatgactttttttttaaggcaacaaaatccgttggtattcaattgagatt 48194763  T
Q  295 tctccaaacttat-aaatgtctcttggtattcaaaagtatata 336  Q
    ||||   |||||| || ||||  ||||||||||||||| ||||    
T  48194764 tctcatgacttatgaattgtccattggtattcaaaagtctata 48194806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 196 - 336
Target Start/End: Complemental strand, 19007589 - 19007448
Alignment:
Q  196 aagaattttatagaatataaataaatattgtggtattcaatcaagacaatcaagattgttttttagggcaacagacttaagtagtattcaattaagattt 295  Q
    |||| ||||||| ||| |||| |||| |||||||||||||||||||||| || || | ||||||| ||||||| | |    | |||||||||| ||||||    
T  19007589 aagacttttataaaatgtaaacaaatcttgtggtattcaatcaagacaaacatgacttttttttaaggcaacaaaatccgttggtattcaattgagattt 19007490  T
Q  296 ctccaaacttat-aaatgtctcttggtattcaaaagtatata 336  Q
    |||   |||||| || ||||| |||||||| |||||| ||||    
T  19007489 ctcatgacttatgaattgtctattggtattaaaaagtctata 19007448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 453
Target Start/End: Complemental strand, 28039242 - 28039174
Alignment:
Q  385 aaaatacacataacatgctcattcaacaatctcatgaaaaaccttgagactttttgaaactttcataat 453  Q
    |||||||||||||| | |||||||||||||||||  || |  ||||||||||||||| |||| ||||||    
T  28039242 aaaatacacataacgtactcattcaacaatctcacaaatattcttgagactttttgagacttccataat 28039174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 318 - 418
Target Start/End: Original strand, 41060184 - 41060286
Alignment:
Q  318 tggtattcaaaagtatataagttttaataaattcttttgtag--tagattttgcaagacttttttgttgaaaatacacataacatgctcattcaacaatc 415  Q
    |||||||||||||||||||  |||||||| |||||||| |||  | ||||||| ||||||||||   | ||||||||||||||||| |||||||||||||    
T  41060184 tggtattcaaaagtatatagattttaatagattcttttatagagtggattttgtaagactttttaactaaaaatacacataacatgttcattcaacaatc 41060283  T
Q  416 tca 418  Q
    |||    
T  41060284 tca 41060286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 279 - 418
Target Start/End: Complemental strand, 34115399 - 34115257
Alignment:
Q  279 gtattcaattaagatttctccaaacttataaa-tgtctcttggtattcaaaagtatataagttttaataaattcttttgta--gtagattttgcaagact 375  Q
    ||||||||| ||||||| | | |||||||||| ||| | | ||||||||||| | | ||  |||||||  |||||||||||  || |||||||  |||||    
T  34115399 gtattcaatcaagatttgtaccaacttataaaatgtttataggtattcaaaaatctgtagattttaatggattcttttgtatagtggattttgtgagact 34115300  T
Q  376 tttttgttgaaaatacacataacatgctcattcaacaatctca 418  Q
    ||||  |||||||||||||| ||||||||||||||||||||||    
T  34115299 ttttaattgaaaatacacatgacatgctcattcaacaatctca 34115257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 196 - 452
Target Start/End: Complemental strand, 37649706 - 37649445
Alignment:
Q  196 aagaattttatagaatataaataaatattgtggtattcaatcaagacaatcaagattgtttttt-agggcaacagacttaagtagtattcaattaagatt 294  Q
    |||| |||||||||| |||| ||||| |  |||||||||||||| |||||||||||| ||| || | ||||||  | |    | |||||| ||| |||||    
T  37649706 aagacttttatagaacataagtaaatctcatggtattcaatcaacacaatcaagattttttattcaaggcaaccaaatcccatggtattcgattgagatt 37649607  T
Q  295 tctccaaacttataaa-tgtctcttggtattcaaaagtatataagttttaataaattcttttgtag--tagattttgcaagacttttttgttgaaaatac 391  Q
    ||| | |||||||||| ||||| ||||||||||||| | |  || ||||||   ||||||||||||  | |||||||  ||||||||| ||| |||| ||    
T  37649606 tctaccaacttataaaatgtctattggtattcaaaaatcttaaaattttaacggattcttttgtagagtggattttgtgagactttttagttcaaaaaac 37649507  T
Q  392 acataacatgctcattcaacaatctcatgaaaaacct-tgagactttttgaaactttcataa 452  Q
    |||| | ||||| ||||||||||||||  ||||| ||  |||||||||||| || |||||||    
T  37649506 acatgaaatgctaattcaacaatctcacaaaaaaactaagagactttttgagacattcataa 37649445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 207 - 250
Target Start/End: Original strand, 21067019 - 21067062
Alignment:
Q  207 agaatataaataaatattgtggtattcaatcaagacaatcaaga 250  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  21067019 agaatataaataaatcttgtggtattcaatcaagacaatcaaga 21067062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 196 - 259
Target Start/End: Original strand, 33474592 - 33474655
Alignment:
Q  196 aagaattttatagaatataaataaatattgtggtattcaatcaagacaatcaagattgtttttt 259  Q
    |||| |||||| |||| ||||||||| ||||||||||||||||||||||| |||||| ||||||    
T  33474592 aagacttttatggaatctaaataaatcttgtggtattcaatcaagacaattaagattttttttt 33474655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 336
Target Start/End: Complemental strand, 46037360 - 46037218
Alignment:
Q  196 aagaattttatagaatataaataaatattgtggtattcaatcaagacaatcaaga-ttgttttttagggcaacagacttaagtagtattcaattaagatt 294  Q
    |||| ||||||| ||| |||| |||| ||||| ||||||||||||||||||| || || ||||||| ||||||| | |    | |||||||||| |||||    
T  46037360 aagacttttataaaatgtaaacaaatcttgtgatattcaatcaagacaatcatgactttttttttaaggcaacaaaatccgttggtattcaattgagatt 46037261  T
Q  295 tctccaaacttat-aaatgtctcttggtattcaaaagtatata 336  Q
    ||||   |||||| || ||||| ||||||||||||||| ||||    
T  46037260 tctcatgacttatgaattgtctattggtattcaaaagtctata 46037218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 242
Target Start/End: Complemental strand, 46202559 - 46202513
Alignment:
Q  196 aagaattttatagaatataaataaatattgtggtattcaatcaagac 242  Q
    |||| |||||||||||| |||||||| ||||||||||||||||||||    
T  46202559 aagatttttatagaataaaaataaattttgtggtattcaatcaagac 46202513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 354
Target Start/End: Complemental strand, 37042573 - 37042413
Alignment:
Q  196 aagaattttatagaatataaataaatattgtggtattcaatcaagacaatcaagattgttttttagg-gcaacagacttaagtagtattcaattaagatt 294  Q
    |||| ||||||| ||| ||||| ||| |||||||||||||| | |||||||||  || |||||||   |||||  | |   |||||||||||||||||||    
T  37042573 aagatttttataaaatctaaattaattttgtggtattcaattatgacaatcaaattttttttttaaatgcaacgaaatccggtagtattcaattaagatt 37042474  T
Q  295 tctccaaacttataaa-tgtctcttggtattcaaaagtatataagttttaataaattcttt 354  Q
    ||||  |||||||||| | |||| |||||||||||| || |||  ||| ||| ||||||||    
T  37042473 tctcacaacttataaattatctcatggtattcaaaaatacatagatttaaatgaattcttt 37042413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 259
Target Start/End: Complemental strand, 12253401 - 12253338
Alignment:
Q  196 aagaattttatagaatataaataaatattgtggtattcaatcaagacaatcaagattgtttttt 259  Q
    |||| |||||| |||| ||||||||| || |||||||||||||||||||| |||| | ||||||    
T  12253401 aagacttttatggaatctaaataaatcttatggtattcaatcaagacaattaagactttttttt 12253338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 9599075 - 9599023
Alignment:
Q  196 aagaattttatagaatataaataaatattgtggtattcaatcaagacaatcaa 248  Q
    |||||||||||| ||| ||||||||| |||| ||||||||| |||| ||||||    
T  9599075 aagaattttataaaatttaaataaatcttgttgtattcaattaagataatcaa 9599023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 9826646 - 9826594
Alignment:
Q  196 aagaattttatagaatataaataaatattgtggtattcaatcaagacaatcaa 248  Q
    |||||||||||| ||| ||||||||| |||| ||||||||| |||| ||||||    
T  9826646 aagaattttataaaatttaaataaatcttgttgtattcaattaagataatcaa 9826594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 15913421 - 15913369
Alignment:
Q  196 aagaattttatagaatataaataaatattgtggtattcaatcaagacaatcaa 248  Q
    |||| ||||||||||||||||||||| |  ||| |||||||||||| ||||||    
T  15913421 aagacttttatagaatataaataaatctcatggcattcaatcaagataatcaa 15913369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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