View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11823_low_5 (Length: 500)
Name: NF11823_low_5
Description: NF11823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11823_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Original strand, 25576704 - 25577187
Alignment:
| Q |
1 |
cttgatagctgacactgacacatgatgccctgtgggtagattttcccaggtaacaaatcatactttaaatcatcaaattgctttgctgacttctagtatc |
100 |
Q |
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| T |
25576704 |
cttgatagctgacactgacacatgatgccctgtgggtagattttcccaggtaacaaatcatactttaaatcatcaaattgctttgctgacttctagtatt |
25576803 |
T |
|
| Q |
101 |
tacttagttaatgtttgtaacatatggtagtatgctaaatgtttgaatgatggttccgatttgggaaggacatgatatctactctatttttatcatcatc |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
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| T |
25576804 |
tacttagttaatgtttgtaacaaatggtagtatgctaaatgtttgaatgatggttccgctttgggaaggacatgatatctactctatgtttatcatcatc |
25576903 |
T |
|
| Q |
201 |
tgnnnnnnnnnn--ctgtgcttgcgtaaggcataagttcatctagactcacttcaagtgtttaaaaaactaatctattacaatttcttgatccacttcac |
298 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
25576904 |
tgttttttttttttctgtgcttgcgtaaggcataagttcatctagactcacttcaagtatttaaaaaactaatctattacaatttcttgatccacttcac |
25577003 |
T |
|
| Q |
299 |
aatttctatgtttttatctgaaatggttataacttatattgcttctattcatttgagtaatgacagccaaggaatttgtggtaagaaatttgattatgca |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
25577004 |
aatttctatgtttttatctgaaatggttataacttatattgcttctattcgtttgagtaatgatagccaaggaatttgtggtaagaaatttgattatgca |
25577103 |
T |
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| Q |
399 |
agtttaagtagttaacaaggaatgacttaccggttaaataatttatgggtgcaagaaattttacaaccataactgatacaatgc |
482 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25577104 |
agtttaagtagttaacaaggaatgacttattggttaaataatttatgggtgcaagaaattttacaaccataactgatacaatgc |
25577187 |
T |
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