View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11823_low_6 (Length: 487)
Name: NF11823_low_6
Description: NF11823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11823_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 5337681 - 5337288
Alignment:
| Q |
1 |
gatgatgaagaagaagcagcaggttcgtcgtttttctaattttaatattaaaatcagcgtcagcgaaaaacttgaagnnnnnnn-gttacagtaaataag |
99 |
Q |
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| T |
5337681 |
gatgatgaagaagaagcagcaggttcgtcgtttttctaattttaatattaaaatcagcgtcagcgaaaaacttgaagaaaaaaaagttacagtaaataag |
5337582 |
T |
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| Q |
100 |
ctgaagtcaacgaaactaacctttcccatctgccaccgttggagtatattgattgatgaatagcagaatgtttaaacttgaagattggaatctgattttg |
199 |
Q |
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| T |
5337581 |
ctgaagtcaacgaaactaacctttcccatctgccaccgttggagtatattgattgatgaatagcagaatgtttaaacttgaagattggaatctgattttg |
5337482 |
T |
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| Q |
200 |
aacctgaatttgaataaaggatggagtattgtaaatgcttcccctgctaaaaaatgtcacctacatacataaagaaaatggaagtcaacgagtttggtgt |
299 |
Q |
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| T |
5337481 |
aacctgaatttgaataaaggatggagtattgtaaatgcttcccctgctaaaaaatgtcacctacatacataaagaaaatggaagtcaacgagtttggtgt |
5337382 |
T |
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| Q |
300 |
attattgccgtatctgtttggtagcatatgtctttgcatacctcagtgtctatataaaacaatcatatccaatataacaaatcatttctttttt |
393 |
Q |
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| T |
5337381 |
attattgccgtatctgtttggtagcatatgtctttgcatacctcagtgtatatataaaacaatcatgtccaatataacaaatcatttttttttt |
5337288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 369 - 471
Target Start/End: Complemental strand, 5337166 - 5337067
Alignment:
| Q |
369 |
caatataacaaatcatttcttttttggtacaaatgaaaaatcattcttattacatgcaataatagccaacttaattatttaagcatgaattatgtgtgag |
468 |
Q |
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| T |
5337166 |
caatataaaaaatcatttcttttttggtacaaatgaaaaatcattcttattacatgc---aatagccaacttaattatttaagcatgaattatgtgtgag |
5337070 |
T |
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