View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11823_low_8 (Length: 411)
Name: NF11823_low_8
Description: NF11823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11823_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 12 - 239
Target Start/End: Complemental strand, 34973038 - 34972811
Alignment:
| Q |
12 |
gaacactacgtaaatgtgcttatgtgatttgaaattacgttaatattgtgacgttgatggattaggtaacgatatatgataaaatatcactatccatctc |
111 |
Q |
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| T |
34973038 |
gaacactacgtaaatgtgcttatgtgatttgaaattacgttaatattgtgatgttgatgaattaggtaacgatatacgataaaatattaccatccatctc |
34972939 |
T |
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| Q |
112 |
gtaaattatgtgtgaatcatggaaaatattattaagatctcttttattaatttattattatggtggtgagtcaagaagaaagcgacttcttttcnnnnnn |
211 |
Q |
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| T |
34972938 |
gtaaattatgtgtgaatcatggaaaatattattaagatctcttttattaatttattattatggtggtgagtcaagaagaaagcgacttcttttcaaaaaa |
34972839 |
T |
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| Q |
212 |
ngaagaaagcgacttcaattgaaggtta |
239 |
Q |
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| T |
34972838 |
agaagaaagcgacttcaattgaaggtta |
34972811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 270 - 393
Target Start/End: Complemental strand, 34972543 - 34972412
Alignment:
| Q |
270 |
gatccgaaaagtacttataatctcaaataaaaatcatttaggtatccgtttaattattttaaaaatacaca-----taattattg---ttttttatagtt |
361 |
Q |
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| T |
34972543 |
gatccaaaaaatacttataatctcaaataaaaatcatttaggtatacatttaattattttaaaaatacacatgacttaattattgtttttttttatagtt |
34972444 |
T |
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| Q |
362 |
ttactcttttatatgtgtgtgactaaatgaaa |
393 |
Q |
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| T |
34972443 |
ttattcttttatatgcgtgtgactaaatgaaa |
34972412 |
T |
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