View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11824_high_1 (Length: 939)
Name: NF11824_high_1
Description: NF11824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11824_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 832; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 832; E-Value: 0
Query Start/End: Original strand, 6 - 924
Target Start/End: Complemental strand, 47501702 - 47500780
Alignment:
| Q |
6 |
agcagagaggtgaataacatatcccccagcaaaatcaataaccccacgtttagccaaccaaccatcaggacaccaaatactaaaggcaacaacagtgtac |
105 |
Q |
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| T |
47501702 |
agcagagaggtgaataacatatcccccagcaaaatcaataaccccacgtttagccaaccaaccatcaggacaccaaatactaaaggcaacaacagtgtac |
47501603 |
T |
|
| Q |
106 |
gagaatgtaacccaaagtggcacaaacaacatccatgcacgaatgttcattctcccaagtaaagcaccagctatcaaaatcaaagtaagaccagcgaaaa |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47501602 |
gagaatgtaacccaaagtggcacaaacaacatccatgcacgaatgttcattctcccaagtaaagcaccagctatcaaaatcaaagtaagaccagcgaaaa |
47501503 |
T |
|
| Q |
206 |
caccttgataaaataccattgtagcattaggaaaattccccaaaaatgctttccccaacaaaaacttttcatctaatgctacatttggtttccctaagaa |
305 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47501502 |
caccttgataaaataccattgtagcattaggaaaattccccaaaaatgctttccccaacaaaaacttttcatctaatgctacatttggtttccctaagaa |
47501403 |
T |
|
| Q |
306 |
aaataccattttctccccaaatgacatttggtatgcccatgaaacccaacaaaggagaacggatgcaaatgcatagaaggccatgaaagctgagtttata |
405 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47501402 |
aaataccattttctccccaaatgacatttggtatgcccatgaaacccaacaaaggagaacggatgcaaatgcatagaaggccatgaaagctgagtttata |
47501303 |
T |
|
| Q |
406 |
gcccatgttttcttcactaggcttccgtaaagtatgacaagcccgggaatgctttgaagcccaaccattgttgctgctgttaactgccatgcgttgtccc |
505 |
Q |
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| T |
47501302 |
gcccatgttttcttcactaggcttccgtaaagtatgacaagcccgggaatgctttgaagcccaaccattgttgctgctgttaattgccatgcgttgtccc |
47501203 |
T |
|
| Q |
506 |
ctttgttcatccactctgggcttgcttcatcaggcaacaggtttgaaggtagctccatactcgaatatgttaccttgattgattaagtttaagagagatt |
605 |
Q |
| |
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| T |
47501202 |
ctttgttcatccactctgggcttgcttcatcaggcaacaggtttgaaggtagctccatactcaaatatgttaccttaattgattaagtttaagagagatt |
47501103 |
T |
|
| Q |
606 |
catgcactatataaataaatatgtgatcgattatgtttttacttggtagaggacatgcaatttgtcgtttctatttat----ttatctattgtatgggtt |
701 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
47501102 |
catgcactatataaataaatatgtgatcgattatgtttttacttggtagaggacatgcaatttgtcgtttctatttatttatttatttattgtatgggtt |
47501003 |
T |
|
| Q |
702 |
ctaaaggccggctaattcgttggcacttggct---gcaacagttaagtacgttttccattnnnnnnnggttaagtacgaatttgcttcattcatgatgct |
798 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
47501002 |
ctaaaggccggctaattcgttggcacttggctgcagcaacagttaagtacgttttccatcaaaaaaaggttaagtacgaatttgcttcattcatgatgct |
47500903 |
T |
|
| Q |
799 |
cacaacttcggattaatcatttctacctaaaaacttcagtactacttccaagtttttgggttcagtaatatttgtacttcttatacagttggacttggtc |
898 |
Q |
| |
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| T |
47500902 |
cacaacttcggatta---atttctacctaaaaacttcagtactgcttccaagtttttgggttcagtaatatttgtacttcttatacagttggacttggtc |
47500806 |
T |
|
| Q |
899 |
tcacttttaggttcaatgcgtgttat |
924 |
Q |
| |
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||||||||||||||||| |||||||| |
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| T |
47500805 |
tcacttttaggttcaatacgtgttat |
47500780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 78 - 239
Target Start/End: Original strand, 13349950 - 13350111
Alignment:
| Q |
78 |
ccaaatactaaaggcaacaacagtgtacgagaatgtaacccaaagtggcacaaacaacatccatgcacgaatgttcattctcccaagtaaagcaccagct |
177 |
Q |
| |
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|||||||||||| ||| || |||||| ||||| || | ||| | |||||||||| |||||| ||| | |||||||||||| | | |||||||||| |
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| T |
13349950 |
ccaaatactaaaagcagtaaaagtgtaagagaaagtgagccataaaggcacaaacatcatccaagcatagaagttcattctccccaacacagcaccagct |
13350049 |
T |
|
| Q |
178 |
atcaaaatcaaagtaagaccagcgaaaacaccttgataaaataccattgtagcattaggaaa |
239 |
Q |
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| T |
13350050 |
atcaaaatcaaagtaatagcagcaaaaacacattgaaaataaatcatagtagcatttggaaa |
13350111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 340 - 512
Target Start/End: Complemental strand, 31605872 - 31605700
Alignment:
| Q |
340 |
gcccatgaaacccaacaaaggagaacggatgcaaatgcatagaaggccatgaaagctgagtttatagcccatgttttcttcactaggcttccgtaaagta |
439 |
Q |
| |
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|||||| |||||||||||| || || | ||||||||||| | |||||||||||| || |||| |||||| ||||||| || | ||| || || |||| |
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| T |
31605872 |
gcccataaaacccaacaaactagtacagcagcaaatgcatatagggccatgaaagccgaatttacggcccattttttcttaaccatgctgccatagagta |
31605773 |
T |
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| Q |
440 |
tgacaagcccgggaatgctttgaagcccaaccattgttgctgctgttaactgccatgcgttgtcccctttgtt |
512 |
Q |
| |
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| T |
31605772 |
ttacaagcccaggaacagtttgaaggcctactaatgttgctgctgttagttgccatgcattgtctgctttgtt |
31605700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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