View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11824_high_3 (Length: 318)
Name: NF11824_high_3
Description: NF11824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11824_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 28677455 - 28677147
Alignment:
| Q |
1 |
accatacgaaatacttctcctctctagctatcacttgcatattataacatatttctccttagatatttaggtaaatttaagattttttaagcaattaggt |
100 |
Q |
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| T |
28677455 |
accatacaagatacttctcctctctagctatcacttgcatattataacatatttctccttagatatttaggtaaatttaagattttttaaggaattaggt |
28677356 |
T |
|
| Q |
101 |
ttccatgaaaaaattgttaatagttcatgtatcaggctaatagttaaggaaacattcatttttgagtcttttgattaagtcgaaaaatatctctgttatc |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
28677355 |
ttccatgaaaaaattgtta-tagttcatgtatcaggctaatagttaaggaaacattcatttttgagtcttttgattaagttgaaaaatatctctgtaatc |
28677257 |
T |
|
| Q |
201 |
tactaccagtattcttgaatagtttctgagaattttgatatttatgactcttgtgttatcttctaccagtattctaccagatagcattcttaaaattatc |
300 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
28677256 |
tactaccagtattcttcaatagtttctgagaattttgatatttatgactcttgtgttatcttctaccagta-tctactagatagcattcttaaaattatt |
28677158 |
T |
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| Q |
301 |
tgtgctcctcc |
311 |
Q |
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|||||| |||| |
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| T |
28677157 |
tgtgctactcc |
28677147 |
T |
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