View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11824_high_5 (Length: 268)
Name: NF11824_high_5
Description: NF11824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11824_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 22 - 253
Target Start/End: Complemental strand, 21469961 - 21469731
Alignment:
| Q |
22 |
aaatgccaacagcaatcttataagctgacttgacatttcaattttttaaaatgattacaacttaaactataagagattttgaagagaataaagtaatata |
121 |
Q |
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| T |
21469961 |
aaatgcccacagcaatcttataagccaacttcacatttca-ttttttaaaatgattacaacttaaactataagagattttgaagagaataaagtaatata |
21469863 |
T |
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| Q |
122 |
aaaacacaaccaatatctcataaatataattaaacgatatcgaggatcagaactaacatatatgcctgcaaagactgcaatgtatttcagtgaaaaattc |
221 |
Q |
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| T |
21469862 |
aaaacacaaccaatatctcataaatataattaaacgatatcgaggatcagaactaacatatatgcctgcaaagactgcaatgtatttcagtgaaaaattc |
21469763 |
T |
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| Q |
222 |
cgaaagatatcaccaagttttcctgtagtgtg |
253 |
Q |
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| T |
21469762 |
cgaaagatatcaccaagtgttcctgtagtgtg |
21469731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 18 - 252
Target Start/End: Complemental strand, 21499860 - 21499621
Alignment:
| Q |
18 |
cacaaaatgccaacagcaatcttataagctgacttgacatttcaattttttaaaatgattacaa---cttaaactataagagattttgaagagaataaag |
114 |
Q |
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||||||||||| ||| ||||||||||||||||| ||| ||||| ||||| | |||||||||||| ||||||||||||||||||| || |||| | | |
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| T |
21499860 |
cacaaaatgcctacaacaatcttataagctgacatgaaatttc-attttcttaaatgattacaatttcttaaactataagagatttccaaatgaatgatg |
21499762 |
T |
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| Q |
115 |
taatataaaaacacaaccaatatctcataaatataattaaacgatatcgaggatcagaactaacatata----tgcctgcaaagactgcaatgtatttca |
210 |
Q |
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| T |
21499761 |
taaatgaatatcacaaccaacatctcataaacataactatattatatcctggatcagaact-acatataagcctgcctacaaaggctgcaatgtatttta |
21499663 |
T |
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| Q |
211 |
gtgaaaaattccgaaagatatcaccaagttttcctgtagtgt |
252 |
Q |
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| T |
21499662 |
gtgagcaattcaaaaagatatcactacgttttcctgtagtgt |
21499621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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