View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11824_low_4 (Length: 279)

Name: NF11824_low_4
Description: NF11824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11824_low_4
NF11824_low_4
[»] chr2 (3 HSPs)
chr2 (1-269)||(24072662-24072931)
chr2 (1-159)||(44482424-44482580)
chr2 (194-269)||(24078397-24078472)
[»] chr7 (3 HSPs)
chr7 (1-269)||(12316072-12316338)
chr7 (1-269)||(18566632-18566897)
chr7 (1-269)||(1724493-1724755)
[»] chr4 (2 HSPs)
chr4 (1-264)||(18809882-18810141)
chr4 (1-269)||(13758193-13758454)
[»] chr5 (1 HSPs)
chr5 (1-269)||(19834548-19834816)
[»] scaffold0164 (1 HSPs)
scaffold0164 (1-163)||(17122-17282)
[»] chr3 (1 HSPs)
chr3 (1-269)||(54077864-54078126)
[»] chr6 (1 HSPs)
chr6 (107-269)||(893066-893227)


Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 24072662 - 24072931
Alignment:
Q  1 ttgtcgcaatgtagcgccatagaagcaaatggattgttcgaatattcatctttcacctaggagactgtggttaatcaagcattgtaccattttaatgaca 100  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  24072662 ttgtcgcaatgtagcgccatagaagcaaattgattgtttgaatattcatctttcacctaggagacggtggttaatcaagcattgtaccattttaatgaca 24072761  T
Q  101 atgatcattcatcttcactcatgacttctctctctatatattttctatgtttgatgattgttc---nnnnnnnnnnngttgacatttttaatttggtttt 197  Q
    |||| |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||              |||||||||||||||||||||||    
T  24072762 atgaccattcatcttcactcatgact--tctctctatatattttctatgtttgatgattgttcttttttttttttttgttgacatttttaatttggtttt 24072859  T
Q  198 atgggtattcaacaattccatggtaatggaaatatctttctttcttttcaagttaagatcaaggcgtctgtg 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24072860 atgggtattcaacaattccatggtaatggaaatatctttctttcttttcaagttaagatcaaggcgtttgtg 24072931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 44482580 - 44482424
Alignment:
Q  1 ttgtcgcaatgtagcgccatagaagcaaatggattgttcgaatattcatctttcacctaggagactgtggttaatcaagcattgtaccattttaatgaca 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  44482580 ttgtcgcaatgtagcgccatagaagcaaattgattgttcgaatattcatctttcacctaggagacggtggttaatcaatcattgtaccattttaatgaca 44482481  T
Q  101 atgatcattcatcttcactcatgacttctctctctatatattttctatgtttgatgatt 159  Q
    ||||  |||||||||||||||||||||||  ||||||||||||||||| ||||||||||    
T  44482480 atgactattcatcttcactcatgacttct--ctctatatattttctatttttgatgatt 44482424  T

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Target: chr2; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 194 - 269
Target Start/End: Original strand, 24078397 - 24078472
Alignment:
Q  194 ttttatgggtattcaacaattccatggtaatggaaatatctttctttcttttcaagttaagatcaaggcgtctgtg 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24078397 ttttatgggtattcaacaattccatggtaatggaaatatctttctttcttttcaagttaagatcaaggcgtttgtg 24078472  T

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Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 12316338 - 12316072
Alignment:
Q  1 ttgtcgcaatgtagcgccatagaagcaaatggattgttcgaatattcatctttcacctaggagactgtggttaatcaagcattgtaccattttaatgaca 100  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  12316338 ttgtcgcaatgtagcgccataaaagcaaattgattgttcgaatattcatctttcacctaggagacggtggttaatcaagcattgtaccattttaatgaca 12316239  T
Q  101 atgatcattcatcttcactcatgacttctctctctatatattttctatgtttgatgattgttcnnnnnnnnnnngttgacatttttaatttggttttatg 200  Q
    ||||  |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||    
T  12316238 atgactattcatcttcactcatgacttct--ctctatatattttctatgtttgatgattgttctttttttttttgttgacatttttaatttggttttatg 12316141  T
Q  201 ggtattcaacaattccatggtaatggaaatatctttctttcttttcaagttaagatcaaggcgtctgtg 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||    
T  12316140 ggtattcaacaattccatggtaatggaaatatctttctttcttttcaagttgagattaaggcgtttgtg 12316072  T

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Target: chr7; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 18566632 - 18566897
Alignment:
Q  1 ttgtcgcaatgtagcgccatagaagcaaatggattgttcgaatattcatctttcacctaggagactgtggttaatcaagcattgtaccattttaatgaca 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  18566632 ttgtcgcaatgtagcgccatagaagcaaattgattgttcgaatattcatctttcacctaggagacggtggctaatcaagcattgtaccattttaatgaca 18566731  T
Q  101 atgatcattcatcttcactcatgacttctctctctatatattttctatgtttgatgattgttcnnnnnnnnnnngttgacatttttaatttggttttatg 200  Q
    ||||  ||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||            |||||||||||||||||||||||||    
T  18566732 atgactattcatcttcactcatgact--tctctttatatattttctatgtttgatgattgttcttttttttttt-ttgacatttttaatttggttttatg 18566828  T
Q  201 ggtattcaacaattccatggtaatggaaatatctttctttcttttcaagttaagatcaaggcgtctgtg 269  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||    
T  18566829 ggtattcagcaattccatggtaatgaaaatatctttctttcttttcaagttgagatcaaggcgtttgtg 18566897  T

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Target: chr7; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 1724755 - 1724493
Alignment:
Q  1 ttgtcgcaatgtagcgccatagaagcaaatggattgttcgaatattcatctttcacctaggagactgtggttaatcaagcattgtaccattttaatgaca 100  Q
    |||||||| |||||||||  |||||||||| ||||||| |||||| ||||||||||||||||||| ||||||| || ||| ||| ||||||||  |||||    
T  1724755 ttgtcgcattgtagcgccgcagaagcaaattgattgttggaatatccatctttcacctaggagacggtggttattcgagcgttgcaccatttttgtgaca 1724656  T
Q  101 atgatcattcatcttcactcatgacttctctctctatatattttctatgtttgatgattgttcnnnnnnnnnnngttgacatttttaatttggttttatg 200  Q
    ||||  |||||| ||||||||||||||||  |||||||| || |||||||||||||||||||               ||||||||| |||||||||||||    
T  1724655 atgaatattcatattcactcatgacttct--ctctatatcttctctatgtttgatgattgttttttttttttcc---gacattttt-atttggttttatg 1724562  T
Q  201 ggtattcaacaattccatggtaatggaaatatctttctttcttttcaagttaagatcaaggcgtctgtg 269  Q
     || ||||||||||||||||||||||| ||||||||||||| ||| ||||| | |||||||||| ||||    
T  1724561 tgttttcaacaattccatggtaatggatatatctttctttccttttaagttgaaatcaaggcgtttgtg 1724493  T

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Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 18809882 - 18810141
Alignment:
Q  1 ttgtcgcaatgtagcgccatagaagcaaatggattgttcgaatattcatctttcacctaggagactgtggttaatcaagcattgtaccattttaatgaca 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  18809882 ttgtcgcaatgtagcgccatagaagcaaattgattgttcgaatattcatctttcacctaggagacggtggttaatcaagcattgtaccatattaatgaca 18809981  T
Q  101 atgatcattcatcttcactcatgacttctctctctatatattttctatgtttgatgattgttcnnnnnnnnnnngttgacatttttaatttggttttatg 200  Q
    ||||  ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||    
T  18809982 atgactattcatcttcactcatgact--tctctctatatattttctatgtttgatgattgtt--ttttttttttgttgacatttttaatttggttttatg 18810077  T
Q  201 ggtattcaacaattccatggtaatggaaatatctttctttcttttcaagttaagatcaaggcgt 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  18810078 ggtattcaacaattccatggtaatggaaatatctttctttcttttcaagttcagatcaaggcgt 18810141  T

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Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 13758454 - 13758193
Alignment:
Q  1 ttgtcgcaatgtagcgccatagaagcaaatggattgttcgaatattcatctttcacctaggagactgtggttaatcaagcattgtaccattttaatgaca 100  Q
    |||||||| |||||||||  |||||||||| ||||||| |||||| ||||||||||||||||||| ||||||| || ||| ||| ||||||||  |||||    
T  13758454 ttgtcgcattgtagcgccgcagaagcaaattgattgttggaatatccatctttcacctaggagacggtggttattcgagcgttgcaccatttttgtgaca 13758355  T
Q  101 atgatcattcatcttcactcatgacttctctctctatatattttctatgtttgatgattgttcnnnnnnnnnnngttgacatttttaatttggttttatg 200  Q
    ||||  |||||| ||||||||||||||||  |||||||| || |||||||||||||||||||               ||||||||| |||||||||||||    
T  13758354 atgaatattcatattcactcatgacttct--ctctatatcttctctatgtttgatgattgtttttttttttcc----gacattttt-atttggttttatg 13758262  T
Q  201 ggtattcaacaattccatggtaatggaaatatctttctttcttttcaagttaagatcaaggcgtctgtg 269  Q
     || ||||||||||||||||||||||| ||||||||||||| ||| ||||| | |||||||||| ||||    
T  13758261 tgttttcaacaattccatggtaatggatatatctttctttccttttaagttgaaatcaaggcgtttgtg 13758193  T

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Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 19834548 - 19834816
Alignment:
Q  1 ttgtcgcaatgtagcgccatagaagcaaatggattgttcgaatattcatctttcacctaggagactgtggttaatcaagcattgtaccattttaatgaca 100  Q
    |||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  19834548 ttgtcgcaatgtagcgccata--agcaaattgattgttcgaatattcatctttcacctaggagacggtggttaatcaagcattgtaccatttcaatgaca 19834645  T
Q  101 atgatcattcatcttcactcatgacttctctctctatatattttctatgtttgatgattgttc----nnnnnnnnnnngttgacatttttaatttggttt 196  Q
    ||||| | ||||||||||||||||||  |||||||||||||||||||||||||||||||||||               ||||||||||||||||||||||    
T  19834646 atgattactcatcttcactcatgact--tctctctatatattttctatgtttgatgattgttctttttttttttttttgttgacatttttaatttggttt 19834743  T
Q  197 tatgggtattcaacaattccatggtaatggaaatatctttctttcttttcaagttaagatcaaggcgtctgtg 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  19834744 tatgggtattcaacaattccatggtaatggaaatatctttctttcttttcaagttgagatcaaggcgtttgtg 19834816  T

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Target: scaffold0164 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 17122 - 17282
Alignment:
Q  1 ttgtcgcaatgtagcgccatagaagcaaatggattgttcgaatattcatctttcacctaggagactgtggttaatcaagcattgtaccattttaatgaca 100  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  17122 ttgttgcaatgtagcgccatagaagcaaattgattgttcgaatattcatctttcacctaggagacggtggttaatcaagcattgtaccattttaatgaca 17221  T
Q  101 atgatcattcatcttcactcatgacttctctctctatatattttctatgtttgatgattgttc 163  Q
    |||| |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  17222 atgaccattcatcttcactcatgact--tctctctatatattttctatgtttgatgattgttc 17282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 54078126 - 54077864
Alignment:
Q  1 ttgtcgcaatgtagcgccatagaagcaaatggattgttcgaatattcatctttcacctaggagactgtggttaatcaagcattgtaccattttaatgaca 100  Q
    |||||||| |||||||||  |||||||||| ||||||| |||||| ||||||||||||||||||| ||||||| || ||| ||| ||||||||  |||||    
T  54078126 ttgtcgcattgtagcgccgcagaagcaaattgattgttggaatatccatctttcacctaggagacggtggttattcgagcgttgcaccatttttgtgaca 54078027  T
Q  101 atgatcattcatcttcactcatgacttctctctctatatattttctatgtttgatgattgttcnnnnnnnnnnngttgacatttttaatttggttttatg 200  Q
    ||||  |||||| ||||||||||||||||  |||||||| || |||||||||||||||||||               ||||||||| |||||||||||||    
T  54078026 atgaatattcatattcactcatgacttct--ctctatatcttctctatgtttgatgattgttttttttttttcc---gacattttt-atttggttttatg 54077933  T
Q  201 ggtattcaacaattccatggtaatggaaatatctttctttcttttcaagttaagatcaaggcgtctgtg 269  Q
     || ||||||||||||||||||||||| ||||||||||||| ||| ||||| | |||||||||| ||||    
T  54077932 tgttttcaacaattccatggtaatggatatatctttctttccttttaagttgaaatcaaggcgtttgtg 54077864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 107 - 269
Target Start/End: Complemental strand, 893227 - 893066
Alignment:
Q  107 attcatcttcactcatgacttctctctctatatattttctatgtttgatgattgttcnnnnnnnnnnngtt-gacatttttaatttggttttatgggtat 205  Q
    |||||||||||||||| ||||||||||  || |||||||||||||||||||||||||            || |||||||||||||| |||||||||||||    
T  893227 attcatcttcactcatcacttctctct--atgtattttctatgtttgatgattgttctttttttttttttttgacatttttaatttagttttatgggtat 893130  T
Q  206 tcaacaattccatggtaatggaaatatctttctttcttttcaagttaagatcaaggcgtctgtg 269  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  893129 tcaacaattccatgataatggaaatatctttctttcttttcaagttgagatcaaggcgtttgtg 893066  T

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