View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11824_low_8 (Length: 227)

Name: NF11824_low_8
Description: NF11824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11824_low_8
NF11824_low_8
[»] chr1 (5 HSPs)
chr1 (2-227)||(10531533-10531757)
chr1 (2-227)||(2902581-2902818)
chr1 (5-173)||(52842116-52842284)
chr1 (2-172)||(16131506-16131676)
chr1 (171-220)||(44758860-44758909)
[»] chr4 (5 HSPs)
chr4 (2-227)||(39250018-39250255)
chr4 (2-223)||(26893579-26893812)
chr4 (15-173)||(1363106-1363264)
chr4 (5-173)||(3221709-3221877)
chr4 (2-76)||(46625287-46625361)
[»] chr7 (2 HSPs)
chr7 (2-173)||(9563915-9564086)
chr7 (5-173)||(32885170-32885338)
[»] chr8 (2 HSPs)
chr8 (16-173)||(23665543-23665700)
chr8 (5-173)||(4533411-4533579)
[»] chr3 (2 HSPs)
chr3 (1-173)||(29085835-29086006)
chr3 (2-223)||(46615976-46616195)
[»] chr2 (2 HSPs)
chr2 (81-227)||(14511120-14511278)
chr2 (41-90)||(37088918-37088967)
[»] chr6 (1 HSPs)
chr6 (177-226)||(4440603-4440652)


Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 2 - 227
Target Start/End: Complemental strand, 10531757 - 10531533
Alignment:
Q  2 atcaagtgtaacattgattgtgccattttcgaagccggagaaaaatttggtgttggtatctgttttcgagacaaccttggacatcttatccaaactaact 101  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10531757 atcaagtgtaacattgattgtgccatttttgaagccgaagaaaaatttggtgttggtatctgttttcgagacaaccttggacatcttatccaaactaact 10531658  T
Q  102 ctatggtctttccttctattactaccacatctgagtgtgaagttactgctctacaacaagcccttcaaattggcctgaatcgggtagtattcgaaagtga 201  Q
    |||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10531657 ctatggtctttccttctattaccaccgcatctgagtgtgaagctactgctctacaacaag-ccttcaaattggcctgaatcgggtagtattcgaaagtga 10531559  T
Q  202 ttgtcaatcagttgtgaatgcagtcc 227  Q
    ||||||| ||||||||||||||||||    
T  10531558 ttgtcaaccagttgtgaatgcagtcc 10531533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 2 - 227
Target Start/End: Original strand, 2902581 - 2902818
Alignment:
Q  2 atcaagtgtaacattgattgtgccattttcgaagccggagaaaaatttggtgttggtatctgttttcgagacaaccttggacatcttatccaaactaact 101  Q
    |||||||||||| ||||||||||| |||||||||||| || ||||||||||||||| |||||||||||||| | ||||||||||||||||||| ||||||    
T  2902581 atcaagtgtaacgttgattgtgcccttttcgaagccgaaggaaaatttggtgttggcatctgttttcgagatagccttggacatcttatccaagctaact 2902680  T
Q  102 ctatggtctttccttctattactaccacatctgagtgtgaagttactgctctacaacaagcccttcaaa------------ttggcctgaatcgggtagt 189  Q
    ||||||| ||||||||| |||| |   || |||||||||||| ||| ||| ||||||||||||| ||||            |||||||||||||||||||    
T  2902681 ctatggtatttccttcttttacaaatgcagctgagtgtgaagctaccgctatacaacaagccctccaaattgctcttgaacttggcctgaatcgggtagt 2902780  T
Q  190 attcgaaagtgattgtcaatcagttgtgaatgcagtcc 227  Q
    ||| |||||||||||||||  |||||||||||||||||    
T  2902781 atttgaaagtgattgtcaactagttgtgaatgcagtcc 2902818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 5 - 173
Target Start/End: Complemental strand, 52842284 - 52842116
Alignment:
Q  5 aagtgtaacattgattgtgccattttcgaagccggagaaaaatttggtgttggtatctgttttcgagacaaccttggacatcttatccaaactaactcta 104  Q
    ||||||||  ||||||||||| | |||||||||| ||  ||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||| |    
T  52842284 aagtgtaatgttgattgtgccctcttcgaagccgaaggtaaatttggtgttggtatctgtttccgagacaaccttggacatcttatccaagctcactcaa 52842185  T
Q  105 tggtctttccttctattactaccacatctgagtgtgaagttactgctctacaacaagcccttcaaattg 173  Q
    |||| ||||| |||||| | ||| ||  ||||  ||||| || ||||||||||||||||||||||||||    
T  52842184 tggtttttccctctatttcaaccgcaattgaggatgaagctattgctctacaacaagcccttcaaattg 52842116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 2 - 172
Target Start/End: Original strand, 16131506 - 16131676
Alignment:
Q  2 atcaagtgtaacattgattgtgccattttcgaagccggagaaaaatttggtgttggtatctgttttcgagacaaccttggacatcttatccaaactaact 101  Q
    |||||||||||  ||||||||||  |||| ||||| | |  ||||||||| |||||||| ||||||||||||| ||||||||| |||||| || || |||    
T  16131506 atcaagtgtaatgttgattgtgcattttttgaagctgaaagaaaatttggcgttggtatttgttttcgagacagccttggacaacttatcaaagctcact 16131605  T
Q  102 ctatggtctttccttctattactaccacatctgagtgtgaagttactgctctacaacaagcccttcaaatt 172  Q
    | |||||  |||| |||||| | ||  || |||| ||||||| ||||||| ||||||||||||| ||||||    
T  16131606 caatggttattccctctattccaactgcagctgaatgtgaagctactgctatacaacaagccctccaaatt 16131676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 44758860 - 44758909
Alignment:
Q  171 ttggcctgaatcgggtagtattcgaaagtgattgtcaatcagttgtgaat 220  Q
    ||||||||||||||||||||||||||||||| ||||||  ||||||||||    
T  44758860 ttggcctgaatcgggtagtattcgaaagtgactgtcaactagttgtgaat 44758909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 3e-50; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 2 - 227
Target Start/End: Original strand, 39250018 - 39250255
Alignment:
Q  2 atcaagtgtaacattgattgtgccattttcgaagccggagaaaaatttggtgttggtatctgttttcgagacaaccttggacatcttatccaaactaact 101  Q
    |||||||||||| ||||||||||| |||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||| ||||||    
T  39250018 atcaagtgtaacgttgattgtgcccttttcgaagccgaagaaaaatttggtattggtatctattttcgagacaaccttggatatcttatccaagctaact 39250117  T
Q  102 ctatggtctttccttctattactaccacatctgagtgtgaagttactgctctacaacaagcccttcaaa------------ttggcctgaatcgggtagt 189  Q
    ||||||| ||| ||| | |||||| |  | |||||||||||| ||| ||||||||||||| ||| ||||            |||||||||||| ||||||    
T  39250118 ctatggtattttcttttcttactatcggagctgagtgtgaagctaccgctctacaacaaggcctccaaattgatcttcaccttggcctgaatcaggtagt 39250217  T
Q  190 attcgaaagtgattgtcaatcagttgtgaatgcagtcc 227  Q
    ||| |||||||||||||||  ||| |||||||||||||    
T  39250218 atttgaaagtgattgtcaacaagtggtgaatgcagtcc 39250255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 26893812 - 26893579
Alignment:
Q  2 atcaagtgtaacattgattgtgccattttcgaagccggagaaaaatttggtgttggtatctgttttcgagacaaccttggacatcttatccaaactaact 101  Q
    |||||||||||   |||||||||| |||||||||||| || |||||||||||||| ||||||||||||||| | |||||| |||||||||||| ||||||    
T  26893812 atcaagtgtaatgctgattgtgcccttttcgaagccgaaggaaaatttggtgttgatatctgttttcgagatagccttgggcatcttatccaagctaact 26893713  T
Q  102 ctatggtctttccttctattactaccacatctgagtgtgaagttactgctctacaacaagcccttcaaa------------ttggcctgaatcgggtagt 189  Q
    ||||| | ||||||||| |||| ||| || |||||||||||| ||| ||||||||||||||| | ||||            |||||||||||||||||||    
T  26893712 ctatgatttttccttcttttacaaccgcagctgagtgtgaagctaccgctctacaacaagccttccaaattgctcttgtacttggcctgaatcgggtagt 26893613  T
Q  190 attcgaaagtgattgtcaatcagttgtgaatgca 223  Q
    |||||||||||| || |||  |||||||||||||    
T  26893612 attcgaaagtgactgccaactagttgtgaatgca 26893579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 15 - 173
Target Start/End: Original strand, 1363106 - 1363264
Alignment:
Q  15 ttgattgtgccattttcgaagccggagaaaaatttggtgttggtatctgttttcgagacaaccttggacatcttatccaaactaactctatggtctttcc 114  Q
    ||||||||||| ||||||||||||  | |||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||| ||||  |||||    
T  1363106 ttgattgtgcccttttcgaagccgatggaaaatttggtgttggtatctgttttcgagacagccttggacatcttatccaagctcactcaatgggttttcc 1363205  T
Q  115 ttctattactaccacatctgagtgtgaagttactgctctacaacaagcccttcaaattg 173  Q
     |||||| | ||| || ||||| |||||| ||||||| |||||||||| || |||||||    
T  1363206 ctctatttcaaccgcaactgagggtgaagctactgctttacaacaagctctccaaattg 1363264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 173
Target Start/End: Original strand, 3221709 - 3221877
Alignment:
Q  5 aagtgtaacattgattgtgccattttcgaagccggagaaaaatttggtgttggtatctgttttcgagacaaccttggacatcttatccaaactaactcta 104  Q
    ||||||||  ||||||||||| | ||| ||| || || |||||||||||||||||||| ||| ||||||| ||||||||||||||||||| || |||| |    
T  3221709 aagtgtaatgttgattgtgccctcttcaaagtcgaaggaaaatttggtgttggtatctatttccgagacagccttggacatcttatccaagctcactcaa 3221808  T
Q  105 tggtctttccttctattactaccacatctgagtgtgaagttactgctctacaacaagcccttcaaattg 173  Q
    | || ||||| | |||| | ||| ||  |||| |||||| ||||||||||||||||||||| |||||||    
T  3221809 tagtttttccctttatttcaaccgcagttgagggtgaagctactgctctacaacaagccctccaaattg 3221877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 76
Target Start/End: Complemental strand, 46625361 - 46625287
Alignment:
Q  2 atcaagtgtaacattgattgtgccattttcgaagccggagaaaaatttggtgttggtatctgttttcgagacaac 76  Q
    |||||||||||| | ||||| |||||||| ||||| | || |||||||||||||||||| |||||||||||||||    
T  46625361 atcaagtgtaacgtagattgcgccatttttgaagctgaaggaaaatttggtgttggtatttgttttcgagacaac 46625287  T

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Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 2 - 173
Target Start/End: Original strand, 9563915 - 9564086
Alignment:
Q  2 atcaagtgtaacattgattgtgccattttcgaagccggagaaaaatttggtgttggtatctgttttcgagacaaccttggacatcttatccaaactaact 101  Q
    |||||||||||| |||||||||||||||||||||    |  |||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||    
T  9563915 atcaagtgtaacgttgattgtgccattttcgaagtttaatgaaaatttggtgttggtatatgttttcgagacaatcttggacatcttatccaagctaact 9564014  T
Q  102 ctatggtctttccttctattactaccacatctgagtgtgaagttactgctctacaacaagcccttcaaattg 173  Q
    | ||| ||||||||| | | || ||  || |||||||||||| ||| ||||||||| ||||||| |||||||    
T  9564015 caatgatctttccttatgtgacaactgcagctgagtgtgaagctaccgctctacaataagccctccaaattg 9564086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 5 - 173
Target Start/End: Complemental strand, 32885338 - 32885170
Alignment:
Q  5 aagtgtaacattgattgtgccattttcgaagccggagaaaaatttggtgttggtatctgttttcgagacaaccttggacatcttatccaaactaactcta 104  Q
    |||||||| |||||||||||| |||| ||| | | || ||||||||||||||||||||||||| |||||| | ||||||||||||| ||| || |||| |    
T  32885338 aagtgtaatattgattgtgccttttttgaatctgaaggaaaatttggtgttggtatctgtttttgagacagctttggacatcttattcaagctcactcga 32885239  T
Q  105 tggtctttccttctattactaccacatctgagtgtgaagttactgctctacaacaagcccttcaaattg 173  Q
    |||| ||||| |||||| | |||  |  |||| ||||||  |   ||||||||||||||||||||||||    
T  32885238 tggtttttccctctatttcaaccgtagttgagggtgaagccatcactctacaacaagcccttcaaattg 32885170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 16 - 173
Target Start/End: Complemental strand, 23665700 - 23665543
Alignment:
Q  16 tgattgtgccattttcgaagccggagaaaaatttggtgttggtatctgttttcgagacaaccttggacatcttatccaaactaactctatggtctttcct 115  Q
    |||||||||| |||||||||||| |  ||||||||||||||||||||||||||||||||||||| ||||||||||||||  | |||| ||||| |||||     
T  23665700 tgattgtgcccttttcgaagccgaaagaaaatttggtgttggtatctgttttcgagacaacctttgacatcttatccaagttcactcaatggtttttccc 23665601  T
Q  116 tctattactaccacatctgagtgtgaagttactgctctacaacaagcccttcaaattg 173  Q
    |||||| | |||||| ||||| | |||| |||| ||||||||| |||||| |||||||    
T  23665600 tctatttcaaccacagctgagggagaagctactactctacaactagccctccaaattg 23665543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 5 - 173
Target Start/End: Original strand, 4533411 - 4533579
Alignment:
Q  5 aagtgtaacattgattgtgccattttcgaagccggagaaaaatttggtgttggtatctgttttcgagacaaccttggacatcttatccaaactaactcta 104  Q
    ||||||||  ||||||||||| ||||| ||| || || |||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||| |    
T  4533411 aagtgtaatgttgattgtgcctttttcaaagtcgaaggaaaatttggtgttggtatctgttttcgagacagccttggacatcttatccaagctcactcaa 4533510  T
Q  105 tggtctttccttctattactaccacatctgagtgtgaagttactgctctacaacaagcccttcaaattg 173  Q
    |||| ||||| |||||| | | | || ||||| |||||| |||||||||||||||| | || |||||||    
T  4533511 tggtttttccctctatttcaatcgcagctgagggtgaagctactgctctacaacaaactctccaaattg 4533579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 29086006 - 29085835
Alignment:
Q  1 aatcaagtgtaacattgattgtgccattttcgaagccggagaaaaatttggtgttggtatctgttttcgagacaaccttggacatcttatccaaactaac 100  Q
    ||||||||||||| | ||||||||||||||| ||| || || |||||||||  |||||||||||||  ||||||||| |  ||||||||||||| || ||    
T  29086006 aatcaagtgtaacgtagattgtgccattttcaaagtcgaaggaaaatttggcattggtatctgtttctgagacaaccctatacatcttatccaagctcac 29085907  T
Q  101 tctatggtctttccttctattactaccacatctgagtgtgaagttactgctctacaacaagcccttcaaattg 173  Q
    || |||||| |||||||| |||| ||||||||  ||||||||| || ||||||||||||||||||||||||||    
T  29085906 tccatggtcgttccttctgttacaaccacatc-aagtgtgaaggtattgctctacaacaagcccttcaaattg 29085835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 46616195 - 46615976
Alignment:
Q  2 atcaagtgtaacattgattgtgccattttcgaagccggagaaaaatttggtgttggtatctgttttcgagacaaccttggacatcttatccaaactaact 101  Q
    |||||||||||||||||||||||| |||| ||| |   || ||||||||||||| |||||| ||||||||||||||||||||| ||||| ||| || |||    
T  46616195 atcaagtgtaacattgattgtgccctttttgaaactaaaggaaaatttggtgttagtatctattttcgagacaaccttggacaacttatacaagctcact 46616096  T
Q  102 ctatggtctttccttctattactaccacatctgagtgtgaagttactgctctacaacaagcccttcaaattggcctgaatcgggtagtattcgaaagtga 201  Q
    | ||| | ||||| | |||| | ||  || |||| ||||||| ||| ||| |||||||||| |||| ||||   || |||||||||||||| |||||| |    
T  46616095 caatgttttttccctttattccaactgcaactgaatgtgaagctaccgctatacaacaagcacttcgaatt--tctcaatcgggtagtatttgaaagtta 46615998  T
Q  202 ttgtcaatcagttgtgaatgca 223  Q
    |||||| | |||||||||||||    
T  46615997 ttgtcagttagttgtgaatgca 46615976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 81 - 227
Target Start/End: Original strand, 14511120 - 14511278
Alignment:
Q  81 gacatcttatccaaactaactctatggtctttccttctattactaccacatctgagtgtgaagttactgctctacaacaagcccttcaaa---------- 170  Q
    ||||| ||||||||  |||||||||||||||||||| | |||| ||| ||  ||||||||||| ||| |||||| |||||||||| ||||              
T  14511120 gacattttatccaagttaactctatggtctttccttttgttaccaccgcagttgagtgtgaagctaccgctctataacaagccctccaaattgctcttga 14511219  T
Q  171 --ttggcctgaatcgggtagtattcgaaagtgattgtcaatcagttgtgaatgcagtcc 227  Q
      |||| |||||||||||||||||  ||||||||||||||  ||||||||||| |||||    
T  14511220 ctttgggctgaatcgggtagtatttcaaagtgattgtcaactagttgtgaatgtagtcc 14511278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 90
Target Start/End: Original strand, 37088918 - 37088967
Alignment:
Q  41 gaaaaatttggtgttggtatctgttttcgagacaaccttggacatcttat 90  Q
    ||||||||||||||| |||||| ||||||  ||| |||||||||||||||    
T  37088918 gaaaaatttggtgttagtatctcttttcgttacagccttggacatcttat 37088967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 4440652 - 4440603
Alignment:
Q  177 tgaatcgggtagtattcgaaagtgattgtcaatcagttgtgaatgcagtc 226  Q
    |||||||||||||||| |||||||||||||||  |||| |||||||||||    
T  4440652 tgaatcgggtagtatttgaaagtgattgtcaactagttatgaatgcagtc 4440603  T

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