View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11825_high_14 (Length: 415)
Name: NF11825_high_14
Description: NF11825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11825_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 371; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 13 - 399
Target Start/End: Original strand, 2273796 - 2274182
Alignment:
| Q |
13 |
agagtgagatataggtaaacggaccaagtgcatagcgtagatatgcgaattaaacgtggtatctcttgcttgttgaatgtgacaaaccttgtaagagtga |
112 |
Q |
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| T |
2273796 |
agagtgagatataggtaaacggaccaagtgcatagcgtagatatgcgaattaaacgtggtatctcttgcttgttgaatgtgacaaaccttgtaagagtga |
2273895 |
T |
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| Q |
113 |
tatgacataatataagattaataatcgctgcggcagtatttgaaacaagtctcacttctatgcttgatattacacttgatagcaccagaatgtataagat |
212 |
Q |
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| T |
2273896 |
tatgacataatataagattgataatcgctgcggcagtatttgaaacgagtctcacttctatgcttgatattacacttgatagcaccagaatgtataagat |
2273995 |
T |
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| Q |
213 |
taccatggtgttttcgttgttgtttttgagagggttagggttaggattagggacacgatgtagtgtacttccaatattaagtgctatttgaaaaatcgaa |
312 |
Q |
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| T |
2273996 |
taccatggtgttttcgttgttgtttttgagagggttagggttagggttagggacacgatgtagtgtacttccaatattaagtgctatttgaaaaatcgaa |
2274095 |
T |
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| Q |
313 |
acaacagcaaggactatgagcatcacagcaatgttatgttgtaccatgaatttaccaaaatatgatgatatattcattgcagcaaac |
399 |
Q |
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| T |
2274096 |
acaacagcaaggactatgagcatcacagcaatgttatgttgtaccataaatttaccaaaatatgatgatatattcattgcagcaaac |
2274182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 60 - 399
Target Start/End: Original strand, 2272282 - 2272624
Alignment:
| Q |
60 |
aattaaacgtggtatctcttgcttgttgaatgtgacaaaccttgtaagagtgatatgacataatataagattaataatcgctgcggcagtatttgaaaca |
159 |
Q |
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| T |
2272282 |
aattaaacgtggtatctcttgcttgttgaatgtgacaaaccttgtaagagtgatatgacataatataaaattgataatcgctgcggcagtatttgaaaca |
2272381 |
T |
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| Q |
160 |
agtctcacttctatgcttgatattacacttgatagcaccagaatgtataagattaccatggtgttttc---gttgttgtttttgagagggttagggttag |
256 |
Q |
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| T |
2272382 |
agtctcacttctatgcttgatattacacttgatagcagcagaatgtataagattaccatggtgttgttattgttgttgtttttgtgagggttagggttag |
2272481 |
T |
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| Q |
257 |
gattagggacacgatgtagtgtacttccaatattaagtgctatttgaaaaatcgaaacaacagcaaggactatgagcatcacagcaatgttatgttgtac |
356 |
Q |
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| T |
2272482 |
ggttagggacacgatgtagtgtacttccaatattaagtgctatttgaaaaatcgaaacaacagcaaggactatgagcatcacagcaatgttatgttgtac |
2272581 |
T |
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| Q |
357 |
catgaatttaccaaaatatgatgatatattcattgcagcaaac |
399 |
Q |
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| T |
2272582 |
catgaatttaccaaaatatgatgatatattcattgcagcaaac |
2272624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 246 - 393
Target Start/End: Complemental strand, 373536 - 373389
Alignment:
| Q |
246 |
gttagggttaggattagggacacgatgtagtgtacttccaatattaagtgctatttgaaaaatcgaaacaacagcaaggactatgagcatcacagcaatg |
345 |
Q |
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|||||||||||| || ||||||||||||||||| || ||| | ||||||||||||||| | |||||||||||| || |||||||||||||||| || |
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| T |
373536 |
gttagggttagggtttgggacacgatgtagtgtcctaccataaccaagtgctatttgaaataagaaaacaacagcaatgagtatgagcatcacagcagtg |
373437 |
T |
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| Q |
346 |
ttatgttgtaccatgaatttaccaaaatatgatgatatattcattgca |
393 |
Q |
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| T |
373436 |
tcatgttccgccatgaatttcccaaaatatgatgacatattcattgca |
373389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 153 - 214
Target Start/End: Complemental strand, 373611 - 373550
Alignment:
| Q |
153 |
tgaaacaagtctcacttctatgcttgatattacacttgatagcaccagaatgtataagatta |
214 |
Q |
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||||||||| ||| |||| ||||||||||||||||||||||| | |||| |||||| ||||| |
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| T |
373611 |
tgaaacaagactcgcttcaatgcttgatattacacttgataggagcagagtgtatatgatta |
373550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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