View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11825_high_15 (Length: 415)

Name: NF11825_high_15
Description: NF11825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11825_high_15
NF11825_high_15
[»] chr2 (29 HSPs)
chr2 (11-400)||(39223524-39223913)
chr2 (11-396)||(39196490-39196878)
chr2 (30-396)||(39205741-39206110)
chr2 (11-396)||(39387474-39387862)
chr2 (16-396)||(39216471-39216854)
chr2 (11-396)||(39370931-39371319)
chr2 (16-396)||(39396637-39397020)
chr2 (31-334)||(39138522-39138825)
chr2 (11-216)||(39153056-39153261)
chr2 (31-334)||(39472764-39473076)
chr2 (16-216)||(39380479-39380679)
chr2 (11-217)||(44895087-44895293)
chr2 (31-330)||(44624659-44624964)
chr2 (309-396)||(39163084-39163171)
chr2 (69-160)||(39413067-39413158)
chr2 (25-157)||(39478288-39478420)
chr2 (11-216)||(39421166-39421368)
chr2 (144-318)||(2362574-2362748)
chr2 (63-204)||(39188786-39188927)
chr2 (30-114)||(39099686-39099770)
chr2 (145-216)||(39126483-39126554)
chr2 (31-217)||(44615402-44615591)
chr2 (271-328)||(39493682-39493739)
chr2 (148-216)||(39099584-39099652)
chr2 (266-330)||(39604196-39604260)
chr2 (260-326)||(39152943-39153009)
chr2 (274-330)||(39144476-39144532)
chr2 (144-216)||(39604313-39604385)
chr2 (274-330)||(44615286-44615342)
[»] chr5 (2 HSPs)
chr5 (11-396)||(33562103-33562491)
chr5 (16-334)||(17060522-17060843)
[»] chr6 (1 HSPs)
chr6 (63-401)||(16114176-16114517)
[»] chr7 (1 HSPs)
chr7 (31-216)||(19808900-19809082)
[»] chr8 (2 HSPs)
chr8 (17-209)||(45342969-45343161)
chr8 (31-160)||(44730168-44730297)


Alignment Details
Target: chr2 (Bit Score: 374; Significance: 0; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 11 - 400
Target Start/End: Complemental strand, 39223913 - 39223524
Alignment:
Q  11 caaaggcaaaaagatccagaacttcatcttcatcaaatgaatcaagcaatttataaattgacaaaagcagcagaaaaccaagaaccgccaaagatttttc 110  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39223913 caaatgcaaaaagatccagaacttcatcttcatcaaatgaatcaagcaatttataaattgacaaaagcagcagaaaaccaagaaccgccaaagatttttc 39223814  T
Q  111 agtattgtctttcatgttttcttttaaatcatatgctagcttcaatgctttttctctctcacaaggttcaatatctggtgagattctcatcagttgttca 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39223813 agtattgtctttcatgttttcttttaaatcatatgctagcttcaatgctttttctctctcacaaggttcaatatctggtgagattctcatcagttgttca 39223714  T
Q  211 agcagatggatttggtaatcagtaataatcacattgtctcccttttgacaccgtggaatgatggggttcagtatcatttccaaaaccagttttgatggat 310  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  39223713 agtagatggatttggtaatcagtaataatcacattgtctcccttttgacaccgtggaatgatggggttcagtatcatttccaaaacaagttttgatggat 39223614  T
Q  311 ctgatgattcttgcagattaactaaaacaccgttgaaaagtgactcaactccatcagttttctcgcttgtgcccaactgcaaacttattc 400  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39223613 ctgatgattcttgcagattaactaaaacaccattgaaaagtgactcaactccatcagttttctcgcttgtgcccaactgcaaacttattc 39223524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 11 - 396
Target Start/End: Original strand, 39196490 - 39196878
Alignment:
Q  11 caaaggcaaaaagatccagaacttcatcttcatcaaatgaatcaagcaatttataaattgacaaaagcagcagaaaaccaagaaccgccaaagatttttc 110  Q
    |||| |||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  39196490 caaatgcaaaaagctccaaaacttcatcttcatcaaaagaatcaagcaatttataaattgacaaaagcagcagaaagccaagaaccgccaaagaattttc 39196589  T
Q  111 agtattgtctttcatgttttcttttaaatcatatgctagcttcaatgctttttctctctcacaaggttcaatatctggtgagattctcatcagttgttca 210  Q
    ||||||||| ||||||||  |||| |||||| |||||||||||||||||| || |||| ||||||||| ||||||||||||||||||||||||||||||     
T  39196590 agtattgtcattcatgttagctttcaaatcaaatgctagcttcaatgcttcttttctcacacaaggtttaatatctggtgagattctcatcagttgttcc 39196689  T
Q  211 agcagatggatttggtaatcagtaataatca---cattgtctcccttttgacaccgtggaatgatggggttcagtatcatttccaaaaccagttttgatg 307  Q
    ||||||| |||||||||||||  ||||| ||   |||| ||||||||||  ||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  39196690 agcagatagatttggtaatcaacaataaccacagcattatctcccttttcccactgtggaatgatggggttcagtatcatttccaaaacaagttttgatg 39196789  T
Q  308 gatctgatgattcttgcagattaactaaaacaccgttgaaaagtgactcaactccatcagttttctcgcttgtgcccaactgcaaactt 396  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  39196790 gatctgatgattcttgcagattaactaaaatactgttgaaaagtgactcaactccatcagttttctcacttgtgtccaactgcaaactt 39196878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 30 - 396
Target Start/End: Original strand, 39205741 - 39206110
Alignment:
Q  30 aacttcatcttcatcaaatgaatcaagcaatttataaattgacaaaagcagcagaaaaccaagaaccgccaaagatttttcagtattgtctttcatgttt 129  Q
    ||||||||||| |||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||| ||||||||||| |||||||| ||     
T  39205741 aacttcatctttatcaaaagaatcaagcaatttataaatcgacaaaagcagtagaaaaccaagaaccgccatagaattttcagtattttctttcatctta 39205840  T
Q  130 tcttttaaatcatatgctagcttcaatgctttttctctctcacaaggttcaatatctggtgagattctcatcagttgttcaagcagatggatttggtaat 229  Q
     |||| || ||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||    
T  39205841 gctttcaagtcaaatgctagcttcaatgctttttctctcacacaaggttcaataactggtgagattctcatcagttgttcaagcagatatatttggtaat 39205940  T
Q  230 cagtaataatc---acattgtctcccttttgacaccgtggaatgatggggttcagtatcatttccaaaaccagttttgatggatctgatgattcttgcag 326  Q
    ||| |||||||   ||||| ||||||||||| ||| ||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  39205941 cagcaataatcacaacattatctcccttttggcacagtggagtgatggggttcagtatcatttccaaaacaagttttgatggatctgctgattcttgcag 39206040  T
Q  327 attaactaaaacaccgttgaaaagtgactcaactccatcagttttctcgcttgtgcccaactgcaaactt 396  Q
    ||||||||||| ||| ||| |||| || | |||||| |||||||||||||||||||||||||||| ||||    
T  39206041 attaactaaaataccattgtaaagagattgaactccgtcagttttctcgcttgtgcccaactgcagactt 39206110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 11 - 396
Target Start/End: Original strand, 39387474 - 39387862
Alignment:
Q  11 caaaggcaaaaagatccagaacttcatcttcatcaaatgaatcaagcaatttataaattgacaaaagcagcagaaaaccaagaaccgccaaagatttttc 110  Q
    |||| |||||||| |||| |||||||||||| |||||  |||||||||    ||||||||||||||||||||||||||||||||| |||||||| |||||    
T  39387474 caaatgcaaaaagctccaaaacttcatcttcgtcaaaataatcaagcagcccataaattgacaaaagcagcagaaaaccaagaacggccaaagaattttc 39387573  T
Q  111 agtattgtctttcatgttttcttttaaatcatatgctagcttcaatgctttttctctctcacaaggttcaatatctggtgagattctcatcagttgttca 210  Q
    |||||| |||||||||||  |||||||||||   |||||||||||||||| || | |  |||||| |||||| | ||||||| ||||||||||||||||     
T  39387574 agtattttctttcatgttagcttttaaatcacgcgctagcttcaatgcttctttttttacacaagtttcaatttttggtgaggttctcatcagttgttct 39387673  T
Q  211 agcagatggatttggtaatcagtaataatcac---attgtctcccttttgacaccgtggaatgatggggttcagtatcatttccaaaaccagttttgatg 307  Q
    |||| ||||||||||||||||| |||||||||   ||||||  ||||||||||| ||||||| |  ||||||| |||||| |||||||| ||||||||||    
T  39387674 agcatatggatttggtaatcagcaataatcacagaattgtcaaccttttgacacagtggaataacagggttcaatatcatatccaaaacaagttttgatg 39387773  T
Q  308 gatctgatgattcttgcagattaactaaaacaccgttgaaaagtgactcaactccatcagttttctcgcttgtgcccaactgcaaactt 396  Q
    | || ||||||||| ||| | |||||||||  |  ||| ||||||| ||||||||  |||||||||| |||||| ||||||||||||||    
T  39387774 ggtccgatgattctcgcatactaactaaaattcttttgtaaagtgattcaactccgccagttttctcacttgtgtccaactgcaaactt 39387862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 16 - 396
Target Start/End: Complemental strand, 39216854 - 39216471
Alignment:
Q  16 gcaaaaagatccagaacttcatcttcatcaaatgaatcaagcaatttataaattgacaaaagcagcagaaaaccaagaaccgccaaagatttttcagtat 115  Q
    |||||||| |||| ||||||||||||| |||| |||  || ||||  |||||||||||||||||| |||||||| |||||| ||||||| |||| |||||    
T  39216854 gcaaaaagctccaaaacttcatcttcaccaaaagaagtaaccaatccataaattgacaaaagcagaagaaaaccgagaaccaccaaagaatttttagtat 39216755  T
Q  116 tgtctttcatgttttcttttaaatcatatgctagcttcaatgctttttctctctcacaaggttcaatatctggtgagattctcatcagttgttcaagcag 215  Q
    | ||  |||||||   ||| |||||| |||||||||||||||||| ||||||  ||||||||| |||||  ||||||||| ||||||||||||| |||      
T  39216754 tttcactcatgttagatttcaaatcaaatgctagcttcaatgcttcttctcttacacaaggtttaatatgaggtgagattttcatcagttgttctagcga 39216655  T
Q  216 atggatttggtaatcagtaataatca---cattgtctcccttttgacaccgtggaatgatggggttcagtatcatttccaaaaccagttttgatggatct 312  Q
    ||  || |||||||||| ||||||||   ||||||||||||| | ||||  | ||||  | |||||| ||||||| |||||||| ||| |||||||||||    
T  39216654 ataaatatggtaatcagcaataatcacagcattgtctcccttcttacacaattgaatagtagggttctgtatcatatccaaaacaagtcttgatggatct 39216555  T
Q  313 gatgattcttgcagattaactaaaacaccgttgaaaagtgactcaactccatcagttttctcgcttgtgcccaactgcaaactt 396  Q
    ||||| ||| ||| |||| |||||| | | ||| |||||||| ||||| ||||||||||||   ||||| ||||||||||||||    
T  39216554 gatgagtctagcaaattagctaaaatatcattgtaaagtgacacaacttcatcagttttcttagttgtgtccaactgcaaactt 39216471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 11 - 396
Target Start/End: Complemental strand, 39371319 - 39370931
Alignment:
Q  11 caaaggcaaaaagatccagaacttcatcttcatcaaatgaatcaagcaatttataaattgacaaaagcagcagaaaaccaagaaccgccaaagatttttc 110  Q
    |||| |||||||| |||| || ||||||||||||||| |||  || ||||  |||| ||||||||||||  ||||||||||||||| ||||||  ||||     
T  39371319 caaatgcaaaaagctccaaaagttcatcttcatcaaaagaagtaaccaatccataatttgacaaaagcaatagaaaaccaagaaccaccaaaggattttt 39371220  T
Q  111 agtattgtctttcatgttttcttttaaatcatatgctagcttcaatgctttttctctctcacaaggttcaatatctggtgagattctcatcagttgttca 210  Q
    | |||| |||||||||||  |||| | ||||  |||||||||||||||||  |||||  ||||||| ||||||| |||||||||| |||| ||||||||     
T  39371219 actattttctttcatgttggctttcatatcaagtgctagcttcaatgcttcatctcttacacaaggctcaatatttggtgagattttcataagttgttct 39371120  T
Q  211 agcagatggatttggtaatcagtaataat---cacattgtctcccttttgacaccgtggaatgatggggttcagtatcatttccaaaaccagttttgatg 307  Q
    |||||  ||||||||||||||| ||||||    |||||||||||||| | || | ||||||  ||||  ||| ||||||| |||||||| | | ||||||    
T  39371119 agcagcaggatttggtaatcagcaataattacaacattgtctcccttcttactcagtggaacaatggtattctgtatcatatccaaaacaaatcttgatg 39371020  T
Q  308 gatctgatgattcttgcagattaactaaaacaccgttgaaaagtgactcaactccatcagttttctcgcttgtgcccaactgcaaactt 396  Q
    |||||||||||||| |||||| |||||||| |||  |   ||||||||||| ||||||||||||||| ||| ||  |||||||||||||    
T  39371019 gatctgatgattctagcagatcaactaaaataccagtatgaagtgactcaagtccatcagttttctcacttatgtgcaactgcaaactt 39370931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 16 - 396
Target Start/End: Original strand, 39396637 - 39397020
Alignment:
Q  16 gcaaaaagatccagaacttcatcttcatcaaatgaatcaagcaatttataaattgacaaaagcagcagaaaaccaagaaccgccaaagatttttcagtat 115  Q
    |||||||| |||| ||||||||||||||| || |||  |||||||  ||||||||||||||||| || ||||||||||||||||||||| ||||||||||    
T  39396637 gcaaaaagctccaaaacttcatcttcatcgaaagaagtaagcaatccataaattgacaaaagcaacaaaaaaccaagaaccgccaaagaattttcagtat 39396736  T
Q  116 tgtctttcatgttttcttttaaatcatatgctagcttcaatgctttttctctctcacaaggttcaatatctggtgagattctcatcagttgttcaagcag 215  Q
    | ||| | ||||   || | ||||||| ||||||||||| ||||| ||||||  ||||||||  ||||  |||||||||||||||||||| ||| ||||     
T  39396737 tttctctaatgtaagctctcaaatcatgtgctagcttcagtgcttcttctcttacacaaggtctaatagttggtgagattctcatcagttcttctagcac 39396836  T
Q  216 atggatttggtaatcagtaataatca---cattgtctcccttttgacaccgtggaatgatggggttcagtatcatttccaaaaccagttttgatggatct 312  Q
     | ||| |||  |||   ||||| ||   ||||||||||||| | |||| ||||||| ||||||||  |||| || |||||||| ||| |||||||||||    
T  39396837 gtagatgtggctatcctcaataaccacaccattgtctcccttcttacacagtggaataatggggttttgtattatatccaaaacaagtcttgatggatct 39396936  T
Q  313 gatgattcttgcagattaactaaaacaccgttgaaaagtgactcaactccatcagttttctcgcttgtgcccaactgcaaactt 396  Q
    ||||||||| |||||| |||  |||   | |||  |||||||||||||||||| ||||| || ||  || ||||||||||||||    
T  39396937 gatgattctagcagataaacataaatgtcattgcgaagtgactcaactccatcggttttatcactcatgtccaactgcaaactt 39397020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 31 - 334
Target Start/End: Complemental strand, 39138825 - 39138522
Alignment:
Q  31 acttcatcttcatcaaatgaatcaagcaatttataaattgacaaaagcagcagaaaaccaagaaccgccaaagatttttcagtattgtctttcatgtttt 130  Q
    |||||||||||||||||  ||  |||||||| ||||| |||||||| ||| |||||||| |||||| ||| ||| |||||||||||   |||||||||      
T  39138825 acttcatcttcatcaaaataagtaagcaattcataaactgacaaaatcagtagaaaaccgagaaccaccagagaattttcagtatt---tttcatgttag 39138729  T
Q  131 cttttaaatcatatgctagcttcaatgctttttctctctcacaaggttcaatatctggtgagattctcatcagttgttcaagcagatggatttggtaatc 230  Q
    |||| | || |  ||||||||||||||||| ||||||  ||  ||||| ||| |  ||||||||||||||||||||||| ||||||  |||   |  |||    
T  39138728 ctttcagattaagtgctagcttcaatgcttcttctcttacatcaggtttaatcttcggtgagattctcatcagttgttctagcagaaagatgcagccatc 39138629  T
Q  231 agtaataatca---cattgtctcccttttgacaccgtggaatgatggggttcagtatcatttccaaaaccagttttgatggatctgatgattcttgcaga 327  Q
    |  ||||||||   |||  ||||| || | |||||||||||| || || ||| |||| || |||||||| | ||||| ||||||||||||||||||||||    
T  39138628 atcaataatcacagcatgttctccattcttacaccgtggaataattggcttctgtattatatccaaaacaacttttgctggatctgatgattcttgcaga 39138529  T
Q  328 ttaacta 334  Q
    |||||||    
T  39138528 ttaacta 39138522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 11 - 216
Target Start/End: Complemental strand, 39153261 - 39153056
Alignment:
Q  11 caaaggcaaaaagatccagaacttcatcttcatcaaatgaatcaagcaatttataaattgacaaaagcagcagaaaaccaagaaccgccaaagatttttc 110  Q
    |||| |||||||| ||||  |||||||||| ||| || |||  || ||||  |||||| ||||||| ||| ||||||||||||||| ||||||| |||||    
T  39153261 caaatgcaaaaagctccaagacttcatctttatcgaaagaagtaaccaatccataaatcgacaaaaccagtagaaaaccaagaaccaccaaagaattttc 39153162  T
Q  111 agtattgtctttcatgttttcttttaaatcatatgctagcttcaatgctttttctctctcacaaggttcaatatctggtgagattctcatcagttgttca 210  Q
    |||||| ||||| || ||  |||| ||||||| ||| || |||||||||| ||||||  ||||||||| ||| |  |||||||||||||||||||||||     
T  39153161 agtattttcttttattttagctttcaaatcatgtgcgagtttcaatgcttcttctcttacacaaggtttaatcttcggtgagattctcatcagttgttct 39153062  T
Q  211 agcaga 216  Q
    ||||||    
T  39153061 agcaga 39153056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 31 - 334
Target Start/End: Original strand, 39472764 - 39473076
Alignment:
Q  31 acttcatcttcatcaaatgaatcaagcaatttataaattgacaaaagcagcagaaaaccaagaaccgccaaagatttttcagtattgtctttcatgtttt 130  Q
    ||||||||||||||||| |||  |||||||| |||||||||||||||||| ||||||||||||||  ||||||| ||||||||||| |||||||||||      
T  39472764 acttcatcttcatcaaaagaagtaagcaattcataaattgacaaaagcagtagaaaaccaagaactaccaaagaattttcagtattttctttcatgttaa 39472863  T
Q  131 cttttaaatcatatgctagcttcaatgctttttctctctcacaagg-------ttcaatatctggtgagattctcatcagttgttcaagcagatggattt 223  Q
    |||| ||||||  ||| ||||||||||| | || | |  |||||||       |||| |  | ||||||||| ||||||| ||||| | ||||  ||| |    
T  39472864 ctttcaaatcaagtgcgagcttcaatgcgtctttttttacacaagggctaatcttcagtgac-ggtgagattttcatcagctgttccaacagaaagatgt 39472962  T
Q  224 ggtaatcagtaataatca---cattgtctcccttttgacaccgtggaatgatggggttcagtatcatttccaaaaccagttttgatggatctgatgattc 320  Q
     |  | ||  ||||||||   ||| ||||||||| | |||||||||||| || ||||||||||| || |||| ||| | ||||| |||||||||||||||    
T  39472963 tgctaccatcaataatcacagcatggtctcccttcttacaccgtggaataatcgggttcagtattatatccagaacaaattttgctggatctgatgattc 39473062  T
Q  321 ttgcagattaacta 334  Q
    |||||||| |||||    
T  39473063 ttgcagatcaacta 39473076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 16 - 216
Target Start/End: Original strand, 39380479 - 39380679
Alignment:
Q  16 gcaaaaagatccagaacttcatcttcatcaaatgaatcaagcaatttataaattgacaaaagcagcagaaaaccaagaaccgccaaagatttttcagtat 115  Q
    |||||||| |||| || |||||||||||| || |||  |||||||  |||||||||||||||||| ||||| ||||||||||||| ||| | ||||||||    
T  39380479 gcaaaaagctccaaaatttcatcttcatcgaaagaagtaagcaatccataaattgacaaaagcagtagaaatccaagaaccgccacagaatcttcagtat 39380578  T
Q  116 tgtctttcatgttttcttttaaatcatatgctagcttcaatgctttttctctctcacaaggttcaatatctggtgagattctcatcagttgttcaagcag 215  Q
    | ||| | ||||   |||| ||||||  ||||||| ||| ||||| ||||||  |||||  ||||||||  ||||||| ||||||||||||||| |||||    
T  39380579 tctctcttatgtaagctttcaaatcaagtgctagcgtcagtgcttcttctcttacacaatcttcaatattcggtgagactctcatcagttgttctagcag 39380678  T
Q  216 a 216  Q
    |    
T  39380679 a 39380679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 11 - 217
Target Start/End: Original strand, 44895087 - 44895293
Alignment:
Q  11 caaaggcaaaaagatccagaacttcatcttcatcaaatgaatcaagcaatttataaattgacaaaagcagcagaaaaccaagaaccgccaaagatttttc 110  Q
    |||| |||||||| |||| ||||||  ||||||| || |||  || ||||  |||||||||||||||||| ||||||||||||||| ||||||| |||||    
T  44895087 caaatgcaaaaagctccaaaacttcgccttcatcgaaagaagtaatcaatccataaattgacaaaagcagtagaaaaccaagaaccaccaaagaattttc 44895186  T
Q  111 agtattgtctttcatgttttcttttaaatcatatgctagcttcaatgctttttctctctcacaaggttcaatatctggtgagattctcatcagttgttca 210  Q
    ||||||  |||| |||||  |||| || | || ||||||||||||||||| ||||||  ||| ||||| ||||  |||||| |||| |||||||  |||     
T  44895187 agtatttccttttatgttagctttgaatttatgtgctagcttcaatgcttgttctcttacacgaggtttaataattggtgacattcccatcagtgtttct 44895286  T
Q  211 agcagat 217  Q
    |||||||    
T  44895287 agcagat 44895293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 31 - 330
Target Start/End: Complemental strand, 44624964 - 44624659
Alignment:
Q  31 acttcatcttcatcaaatgaatcaagcaatttataaattgacaaaagcagcagaaaaccaagaaccgccaaagatttttcagtattgtctttcatgtttt 130  Q
    |||||||||||||||||  ||  | |||||  |||||| ||||||| ||  ||||| || |||||| ||||| | ||||||||||| |||||||||||      
T  44624964 acttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaataattttcagtattttctttcatgttag 44624865  T
Q  131 cttttaaatcatatgctagcttcaatgctttttctctctcacaaggttcaatatctggtgagattctcatcagttgttcaagcagatggatttgg---ta 227  Q
    |||| || |||   ||||||||||||||||  |||||  ||||||||| ||||| |||||||||| ||||||||| ||| ||||||| |||  ||   |     
T  44624864 ctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagtttttctagcagatagatgcggctttc 44624765  T
Q  228 atcagtaataatcaca---ttgtctcccttttgacaccgtggaatgatggggttcagtatcatttccaaaaccagttttgatggatctgatgattcttgc 324  Q
    ||||  ||||||||||   |||||||| || | |    |||| || |||||||||||||| || |||||||| | ||||| |||||||||||||||| ||    
T  44624764 atcatcaataatcacagctttgtctcctttcttaggaagtgggataatggggttcagtattatatccaaaacaatttttgctggatctgatgattctcgc 44624665  T
Q  325 agatta 330  Q
    | ||||    
T  44624664 aaatta 44624659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 309 - 396
Target Start/End: Complemental strand, 39163171 - 39163084
Alignment:
Q  309 atctgatgattcttgcagattaactaaaacaccgttgaaaagtgactcaactccatcagttttctcgcttgtgcccaactgcaaactt 396  Q
    ||||| ||||||||||||||||||||||| ||| ||| |||| || | |||||| |||||||||||||||||||||||||||| ||||    
T  39163171 atctgctgattcttgcagattaactaaaataccattgtaaagagattgaactccgtcagttttctcgcttgtgcccaactgcagactt 39163084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 69 - 160
Target Start/End: Original strand, 39413067 - 39413158
Alignment:
Q  69 tgacaaaagcagcagaaaaccaagaaccgccaaagatttttcagtattgtctttcatgttttcttttaaatcatatgctagcttcaatgctt 160  Q
    ||||||||||| |||||||| ||||||||||||||| ||||| ||||| ||||||| |||  |||| ||||||  |||||||||||||||||    
T  39413067 tgacaaaagcaacagaaaactaagaaccgccaaagagttttcggtattttctttcaagttagctttcaaatcaagtgctagcttcaatgctt 39413158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 25 - 157
Target Start/End: Original strand, 39478288 - 39478420
Alignment:
Q  25 tccagaacttcatcttcatcaaatgaatcaagcaatttataaattgacaaaagcagcagaaaaccaagaaccgccaaagatttttcagtattgtctttca 124  Q
    |||| ||||||| |||| || || |||  |||||||  |||||||||||||||||| |||||| ||||||| ||| |||| ||||||||||| ||| | |    
T  39478288 tccaaaacttcaccttcttcgaaagaagtaagcaatccataaattgacaaaagcagtagaaaatcaagaactgccgaagaattttcagtattttctctga 39478387  T
Q  125 tgttttcttttaaatcatatgctagcttcaatg 157  Q
    |||   |||| ||||||| ||||||||||||||    
T  39478388 tgtaagctttcaaatcatgtgctagcttcaatg 39478420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 11 - 216
Target Start/End: Original strand, 39421166 - 39421368
Alignment:
Q  11 caaaggcaaaaagatccagaacttcatcttcatcaaatgaatcaagcaatttataaattgacaaaagcagcagaaaaccaagaaccgccaaagatttttc 110  Q
    |||| |||||||| ||||  |||||||||||||  ||  ||  || |||||  ||||||||||||||||| |||||||| ||||||   |||   |||||    
T  39421166 caaatgcaaaaagctccaacacttcatcttcattgaaataagtaaccaattggtaaattgacaaaagcagtagaaaaccgagaacc---aaattattttc 39421262  T
Q  111 agtattgtctttcatgttttcttttaaatcatatgctagcttcaatgctttttctctctcacaaggttcaatatctggtgagattctcatcagttgttca 210  Q
    |||||| |||| ||| ||  |||| ||||||   || ||||||||||||| |||| |  |||||| || ||||| |||||||||| |||||||||||||     
T  39421263 agtattttcttccatattagctttcaaatcaagagcgagcttcaatgcttcttcttttacacaagttttaatatgtggtgagattttcatcagttgttct 39421362  T
Q  211 agcaga 216  Q
    ||||||    
T  39421363 agcaga 39421368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 144 - 318
Target Start/End: Complemental strand, 2362748 - 2362574
Alignment:
Q  144 tgctagcttcaatgctttttctctctcacaaggttcaatatctggtgagattctcatcagttgttcaagcagatggatttggtaatcagtaataat---c 240  Q
    ||||||||||| ||||| ||||| | ||  ||||| || || |||||||||||||||||||||||| |||||||  || |||| ||||  ||||||        
T  2362748 tgctagcttcattgcttcttctcgcacatgaggtttaacatgtggtgagattctcatcagttgttcgagcagatcaatgtggtgatcatcaataattaca 2362649  T
Q  241 acattgtctcccttttgacaccgtggaatgatggggttcagtatcatttccaaaaccagttttgatggatctgatgat 318  Q
    ||||| ||||||||   |||| ||||||||||||||||| | || || || |||||   |||||||||||||||||||    
T  2362648 acattttctccctt---acactgtggaatgatggggttctggattatatctaaaacatcttttgatggatctgatgat 2362574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 63 - 204
Target Start/End: Original strand, 39188786 - 39188927
Alignment:
Q  63 ataaattgacaaaagcagcagaaaaccaagaaccgccaaagatttttcagtattgtctttcatgttttcttttaaatcatatgctagcttcaatgctttt 162  Q
    ||||||||| | ||| || ||||||||||||||| ||||||| ||| || |||| |||||||||||  |||||||||||  |||||| |||| ||| |      
T  39188786 ataaattgatagaaggagtagaaaaccaagaaccaccaaagaatttccattattttctttcatgttagcttttaaatcaagtgctagtttcattgcatcc 39188885  T
Q  163 tctctctcacaaggttcaatatctggtgagattctcatcagt 204  Q
    |||||  ||  ||||| ||| || ||||||||||||||||||    
T  39188886 tctcttacatgaggtttaatgtcaggtgagattctcatcagt 39188927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 114
Target Start/End: Complemental strand, 39099770 - 39099686
Alignment:
Q  30 aacttcatcttcatcaaatgaatcaagcaatttataaattgacaaaagcagcagaaaaccaagaaccgccaaagatttttcagta 114  Q
    |||||||||||||||||| |||  |  ||||||||||||||||| ||| || |||||||||||||||||||  || |||||||||    
T  39099770 aacttcatcttcatcaaaagaaggagccaatttataaattgacagaaggagtagaaaaccaagaaccgccaccgaattttcagta 39099686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 39126554 - 39126483
Alignment:
Q  145 gctagcttcaatgctttttctctctcacaaggttcaatatctggtgagattctcatcagttgttcaagcaga 216  Q
    |||||||||| ||||| ||||||  ||| ||||||||||| | |||||||||||||||||||||| ||||||    
T  39126554 gctagcttcattgcttcttctcttacacgaggttcaatatttagtgagattctcatcagttgttcgagcaga 39126483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 217
Target Start/End: Complemental strand, 44615591 - 44615402
Alignment:
Q  31 acttcatcttcatcaaatgaatcaagcaatttataaattgacaaaagcagcagaaaaccaagaaccgccaaagatttttcagtattgtctttcatgtttt 130  Q
    |||||||||||||||||  ||| || ||||   ||||| || |||| ||  ||||| |||||| || ||||||| ||||| ||||| |||||||||||      
T  44615591 acttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtattttctttcatgttag 44615492  T
Q  131 cttttaaatcatatgctagcttcaatgctttttctctctcacaaggtt---caatatctggtgagattctcatcagttgttcaagcagat 217  Q
    |||| || ||| | ||||||||||| ||||  |||||  |||||| ||    ||||| |||||||||| ||||||||||||| |||||||    
T  44615491 ctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatcagttgttctagcagat 44615402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 271 - 328
Target Start/End: Original strand, 39493682 - 39493739
Alignment:
Q  271 atggggttcagtatcatttccaaaaccagttttgatggatctgatgattcttgcagat 328  Q
    ||||||||| |||| || |||||||| | ||||||||||||||||||| |||||||||    
T  39493682 atggggttctgtattatatccaaaacaacttttgatggatctgatgatccttgcagat 39493739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 216
Target Start/End: Complemental strand, 39099652 - 39099584
Alignment:
Q  148 agcttcaatgctttttctctctcacaaggttcaatatctggtgagattctcatcagttgttcaagcaga 216  Q
    |||||||  |||| ||||||  |||||||||  |||| |||||||||||||||||||||||| ||||||    
T  39099652 agcttcatcgcttcttctcttacacaaggtttgatatgtggtgagattctcatcagttgttcgagcaga 39099584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 330
Target Start/End: Complemental strand, 39604260 - 39604196
Alignment:
Q  266 gaatgatggggttcagtatcatttccaaaaccagttttgatggatctgatgattcttgcagatta 330  Q
    |||| ||||| ||| |||| || |||||||| | ||||||||||||||||||| |||||||||||    
T  39604260 gaataatgggattctgtattatatccaaaacaacttttgatggatctgatgatccttgcagatta 39604196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 326
Target Start/End: Complemental strand, 39153009 - 39152943
Alignment:
Q  260 accgtggaatgatggggttcagtatcatttccaaaaccagttttgatggatctgatgattcttgcag 326  Q
    |||||||||| || |||||| |||| || ||||| || | ||||| |||||||||||||||||||||    
T  39153009 accgtggaataattgggttctgtattatatccaacacaatttttgctggatctgatgattcttgcag 39152943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 330
Target Start/End: Complemental strand, 39144532 - 39144476
Alignment:
Q  274 gggttcagtatcatttccaaaaccagttttgatggatctgatgattcttgcagatta 330  Q
    |||||| |||| || |||||||| | ||||||||||||||||||| |||| ||||||    
T  39144532 gggttctgtattatatccaaaacaacttttgatggatctgatgatccttgaagatta 39144476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 216
Target Start/End: Complemental strand, 39604385 - 39604313
Alignment:
Q  144 tgctagcttcaatgctttttctctctcacaaggttcaatatctggtgagattctcatcagttgttcaagcaga 216  Q
    ||||||||||| ||||| ||||||  ||| ||||| ||||| ||||  |||||||||||||||||  ||||||    
T  39604385 tgctagcttcattgcttcttctcttacacgaggtttaatatgtggtttgattctcatcagttgtttgagcaga 39604313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 330
Target Start/End: Complemental strand, 44615342 - 44615286
Alignment:
Q  274 gggttcagtatcatttccaaaaccagttttgatggatctgatgattcttgcagatta 330  Q
    ||||| ||||| || |||||||| ||||||| |||||||||||||||| ||| ||||    
T  44615342 gggtttagtattatatccaaaacaagttttgctggatctgatgattctcgcaaatta 44615286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 11 - 396
Target Start/End: Complemental strand, 33562491 - 33562103
Alignment:
Q  11 caaaggcaaaaagatccagaacttcatcttcatcaaatgaatcaagcaatttataaattgacaaaagcagcagaaaaccaagaaccgccaaagatttttc 110  Q
    |||| |||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |   |||    
T  33562491 caaatgcaaaaagctccaaaacttcatcttcatcaaaagaatcaagcaatttataaattgacaaaagcatcagaaaaccaagaaccgccaaaaaaaattc 33562392  T
Q  111 agtattgtctttcatgttttcttttaaatcatatgctagcttcaatgctttttctctctcacaaggttcaatatctggtgagattctcatcagttgttca 210  Q
    |||||| |||||||||||  |||| |||||| |||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||     
T  33562391 agtattttctttcatgttagctttcaaatcaaatgctagcttcaatgcttcttttctcacacaaggttcaatatctggtgagattctcatcagttgttcc 33562292  T
Q  211 agcagatggatttggtaatcagtaataat---cacattgtctcccttttgacaccgtggaatgatggggttcagtatcatttccaaaaccagttttgatg 307  Q
    || |||| |||||||||||||  ||||||    ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||    
T  33562291 agaagatagatttggtaatcaacaataatgacaacattgtctcccttttgacacagtggaaagatggggttcagtatcatttccaaaacaagttttgatg 33562192  T
Q  308 gatctgatgattcttgcagattaactaaaacaccgttgaaaagtgactcaactccatcagttttctcgcttgtgcccaactgcaaactt 396  Q
    ||||||||||||||||||||||| |||||| ||| ||| |||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  33562191 gatctgatgattcttgcagattagctaaaataccattgtaaagtgactcaactccatcagttttctcacttgtgtccaactgcaaactt 33562103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 16 - 334
Target Start/End: Complemental strand, 17060843 - 17060522
Alignment:
Q  16 gcaaaaagatccagaacttcatcttcatcaaatgaatcaagcaatttataaattgacaaaagcagcagaaaaccaagaaccgccaaagatttttcagtat 115  Q
    |||||||||||||  |||||||||| ||||||  ||  || ||||  |||||  ||||| | || |||||| || |||||| |||| || | ||||||||    
T  17060843 gcaaaaagatccaagacttcatcttgatcaaaataagtaaacaatccataaaccgacaagatcaacagaaatccgagaacctccaatgaatattcagtat 17060744  T
Q  116 tgtctttcatgttttcttttaaatcatatgctagcttcaatgctttttctctctcacaaggttcaatatctggtgagattctcatcagttgttcaagcag 215  Q
    |  |||| |||||  |||| || |||| |||||||||||| ||||  ||| |  |||||| || ||||| |||||| ||| ||||||||||||| ||||     
T  17060743 ttgcttttatgttagctttcaactcatgtgctagcttcaaagcttcgtcttttacacaagatttaatatttggtgacattatcatcagttgttctagcat 17060644  T
Q  216 atggatttggtaatcagtaataatcaca---ttgtctcccttttgacaccgtggaatgatggggttcagtatcatttccaaaaccagttttgatggatct 312  Q
    |  |||  ||   |||  ||||||||||   ||||||||||| | |    ||||||| |||||||||| ||| |  |||||||| | ||||||||||||     
T  17060643 aaagatgcggctttcatcaataatcacaactttgtctcccttcttaggtagtggaataatggggttcattattacatccaaaacaatttttgatggatcc 17060544  T
Q  313 gatgattcttgcagattaacta 334  Q
    ||||||||||||| ||||||||    
T  17060543 gatgattcttgcaaattaacta 17060522  T

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Target: chr6 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 63 - 401
Target Start/End: Complemental strand, 16114517 - 16114176
Alignment:
Q  63 ataaattgacaaaagcagcagaaaaccaagaaccgccaaagatttttcagtattgtctttcatgttttcttttaaatcatatgctagcttcaatgctttt 162  Q
    ||||| |||||||||||||| |||||||| ||| ||| | || |||| |||||| ||| ||||||   |||| |||||    ||||||||||||||||||    
T  16114517 ataaactgacaaaagcagcataaaaccaacaacagccgatgaatttttagtattctctctcatgtaagctttcaaatcgcgcgctagcttcaatgctttt 16114418  T
Q  163 tctctctcacaaggttcaatatctggtgagattctcatcagttgttcaagcagatggatttggtaatcagtaataatcaca---ttgtctcccttttgac 259  Q
    |||||  ||| ||||| ||||  |||||| ||||||||||||| ||| | ||||| ||| ||| | |||  ||||||||||   ||||||||||| | ||    
T  16114417 tctcttacacgaggtttaatagttggtgatattctcatcagttcttctaacagatagatgtggcattcatcaataatcacagcattgtctcccttcttac 16114318  T
Q  260 accgtggaatgatggggttcagtatcatttccaaaaccagttttgatggatctgatgattcttgcagattaactaaaacaccgttgaaaagtgactcaac 359  Q
    || ||||| |   ||||||| |||| || |||||||| ||| |||||||||||| |||||||||||||| ||| ||||   | ||| |||||||||||||    
T  16114317 acagtggagtaccggggttctgtattatatccaaaacaagtcttgatggatctgctgattcttgcagataaacaaaaatgtctttgcaaagtgactcaac 16114218  T
Q  360 tccatcagttttctcgcttgtgcccaactgcaaacttattct 401  Q
      ||||||||||||||||||||  ||||||||||||| ||||    
T  16114217 gtcatcagttttctcgcttgtgtacaactgcaaacttgttct 16114176  T

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Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 31 - 216
Target Start/End: Complemental strand, 19809082 - 19808900
Alignment:
Q  31 acttcatcttcatcaaatgaatcaagcaatttataaattgacaaaagcagcagaaaaccaagaaccgccaaagatttttcagtattgtctttcatgtttt 130  Q
    |||||||||||||||||  ||  |||||||| ||||| |||||||||||| ||||||||||||||| ||| ||| ||||||||| |   |||||||||      
T  19809082 acttcatcttcatcaaaataagtaagcaattcataaactgacaaaagcagtagaaaaccaagaaccaccagagaattttcagtact---tttcatgttag 19808986  T
Q  131 cttttaaatcatatgctagcttcaatgctttttctctctcacaaggttcaatatctggtgagattctcatcagttgttcaagcaga 216  Q
    |||| ||||||  |||||||||||||| || ||||||  ||| ||||| ||| |  ||||||||||||||||||||||| ||||||    
T  19808985 ctttcaaatcaagtgctagcttcaatgtttcttctcttacaccaggtttaatcttcggtgagattctcatcagttgttctagcaga 19808900  T

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Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 17 - 209
Target Start/End: Complemental strand, 45343161 - 45342969
Alignment:
Q  17 caaaaagatccagaacttcatcttcatcaaatgaatcaagcaatttataaattgacaaaagcagcagaaaaccaagaaccgccaaagatttttcagtatt 116  Q
    ||||||| ||||  |||||||||| |||||| |||  |||||||  || ||||||||||| ||| ||||||||||||||   ||| ||||||||||||||    
T  45343161 caaaaagctccaagacttcatctttatcaaaagaagtaagcaatacatgaattgacaaaatcagtagaaaaccaagaacgttcaatgatttttcagtatt 45343062  T
Q  117 gtctttcatgttttcttttaaatcatatgctagcttcaatgctttttctctctcacaaggttcaatatctggtgagattctcatcagttgttc 209  Q
      |||||| |||  |||| || |||  ||||||||| ||||||| ||||||  ||||||||| ||||  |||  |||||||||||||||||||    
T  45343061 tcctttcacgttagctttcaactcaagtgctagcttgaatgcttcttctcttacacaaggtttaatacttggcaagattctcatcagttgttc 45342969  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 31 - 160
Target Start/End: Complemental strand, 44730297 - 44730168
Alignment:
Q  31 acttcatcttcatcaaatgaatcaagcaatttataaattgacaaaagcagcagaaaaccaagaaccgccaaagatttttcagtattgtctttcatgtttt 130  Q
    ||||||||| |||||||  ||  ||||||| ||||||| | ||||| ||  ||||| || |||||| || |||| ||||||||||| ||||| |||||      
T  44730297 acttcatctccatcaaagtaagtaagcaatctataaatcgtcaaaatcaatagaaatccgagaacctcctaagaattttcagtattttcttttatgttag 44730198  T
Q  131 cttttaaatcatatgctagcttcaatgctt 160  Q
    |||| || |||| |||||||||||| ||||    
T  44730197 ctttcaactcatgtgctagcttcaaagctt 44730168  T

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