View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11825_high_17 (Length: 399)
Name: NF11825_high_17
Description: NF11825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11825_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 23 - 389
Target Start/End: Complemental strand, 53602001 - 53601616
Alignment:
| Q |
23 |
ccaatcatgagaactgaaagtaccgacacatttgattacat----------gatgctattaactgtgtc---------aatgtcgtgttttataggttat |
103 |
Q |
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| T |
53602001 |
ccaatcatgagaactgaaagtaccgacacatgtgattacattcagttcaatgatgctattaactgtgtctgatttgtcaatgtcgtgttttataggttat |
53601902 |
T |
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| Q |
104 |
gattatgagtaaaggtgaagattacctgccaacgatgccattaaccatgatgacaaggtgaggaggaatggggttgttagcatcactattatcttctact |
203 |
Q |
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| T |
53601901 |
gattatgagtaaaggtgaagattacctgccaacgatgccattaaccatgatgacaaggtgaggaggaatagggttgttagcatcactattatcttctact |
53601802 |
T |
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| Q |
204 |
ttggggttgttcaaacaacttcctccaaatcgccgatgatgaaatttcattttgataatccaaaaagcgatgagaagagatccaaataataataatgatg |
303 |
Q |
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| T |
53601801 |
ttggggttgttcaaacaacttcctccaaatcgccgatgatgaaatttcattttgataatccaaaaagcgatgagaagagatccaaataataataatgatg |
53601702 |
T |
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| Q |
304 |
atggcgtaaggttgaagttgaagcgaacaatcgcgataatgatcgcaaagctcagagcccaaaccagaaacgaattcattcctttg |
389 |
Q |
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| T |
53601701 |
atggcgtaaggttgaagttgaagcgaacaatcgcgataatgatcgcaaagctcagagcccaaaccagaaacgaattcattcctttg |
53601616 |
T |
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