View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11825_high_19 (Length: 368)
Name: NF11825_high_19
Description: NF11825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11825_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 38377571 - 38377922
Alignment:
| Q |
1 |
tggtggaaaaactttggattcagatgggacagtgtcaacttccattgaagatgttttgttagaccgcattatgcaactgtacaacagcacaaaaatttca |
100 |
Q |
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| T |
38377571 |
tggtggcaaaacttttgattcagatgggacagtgtcaacttccattgaagatgttttgttagactgcattatgcaactgtacaacagctcgaaaatttga |
38377670 |
T |
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| Q |
101 |
tttaaaatataaacaaaacatgtcatttgttttaggttctcaaaggtggtggtcagttactttgtttgggtattgattgacacttgtttatgaatttgta |
200 |
Q |
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| T |
38377671 |
tttaaaatataaacaaaacatgtcatttgttttaggttcttaaaggtggtggtcagttactttatttgggtattgattgacacctgtttatgaatttgta |
38377770 |
T |
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| Q |
201 |
cagtgacagcttgta----nnnnnnnnnngggcgacctcttgagcacatcttataccttatactaaaggtgagctgctgccgttgttaatataatccact |
296 |
Q |
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| T |
38377771 |
cagtgacagcttgtattttttttttttttgggcgacctcttgagcacaccttataccttatattaaaggtgaactgc------tgttaatataattcatt |
38377864 |
T |
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| Q |
297 |
tttgattcttnnnnnnnntaatttaactctatgaaaaaatctaataaatccccgcttct |
355 |
Q |
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| T |
38377865 |
tttgattcttcaaaaaaataatttaactctatgaaaaaatctaat-aatccccgcttct |
38377922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 126 - 215
Target Start/End: Original strand, 34743059 - 34743153
Alignment:
| Q |
126 |
tttgttttaggttctcaaaggtggtggtcag-----ttactttgtttgggtattgattgacacttgtttatgaatttgtacagtgacagcttgta |
215 |
Q |
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| T |
34743059 |
tttgtcttaggttttcaaaggtggtggtcagacccgttactttatttgggtattgattgacacctgtttctgactttgtacagtgacaacttgta |
34743153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 126 - 214
Target Start/End: Original strand, 2427778 - 2427871
Alignment:
| Q |
126 |
tttgttttaggttctcaaaggtggtggtcag-----ttactttgtttgggtattgattgacacttgtttatgaatttgtacagtgacagcttgt |
214 |
Q |
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| T |
2427778 |
tttgctttaggtactcaaaggtggtggtcagacccgttactttgtttgggtattgactgacacttgtttcagactttgtacagtgacaacttgt |
2427871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 126 - 214
Target Start/End: Complemental strand, 7557549 - 7557456
Alignment:
| Q |
126 |
tttgttttaggttctcaaaggtggtggtcag-----ttactttgtttgggtattgattgacacttgtttatgaatttgtacagtgacagcttgt |
214 |
Q |
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| T |
7557549 |
tttgctttagatactcaaaggtggtggtcagactcgttactttgtttgggtattgactgacacttgtttcagactttgtacagtgacaacttgt |
7557456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 126 - 215
Target Start/End: Complemental strand, 15342472 - 15342378
Alignment:
| Q |
126 |
tttgttttaggttctcaaaggtggtggtca-----gttactttgtttgggtattgattgacacttgtttatgaatttgtacagtgacagcttgta |
215 |
Q |
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| T |
15342472 |
tttgttttaggttctcaaaggtggtggtcagaactgttattttgtttgagtatcgactgacacctgtttctgactttgtacagtgataacttgta |
15342378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 215
Target Start/End: Complemental strand, 28933870 - 28933776
Alignment:
| Q |
126 |
tttgttttaggttctcaaaggtggtggtca-----gttactttgtttgggtattgattgacacttgtttatgaatttgtacagtgacagcttgta |
215 |
Q |
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| T |
28933870 |
tttgctttaggtactcaaaggtggtggtcaaatccgttactttgtttggatatttaccgacacttatttcagattttgtactgtgacagcttgta |
28933776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 22565702 - 22565650
Alignment:
| Q |
126 |
tttgttttaggttctcaaaggtggtggtca-----gttactttgtttgggtat |
173 |
Q |
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| T |
22565702 |
tttgttttaggttctcaaagatggtggtcagacccgttactttgtttgggtat |
22565650 |
T |
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