View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11825_high_22 (Length: 310)

Name: NF11825_high_22
Description: NF11825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11825_high_22
NF11825_high_22
[»] chr8 (3 HSPs)
chr8 (103-194)||(21566166-21566257)
chr8 (103-203)||(32207851-32207951)
chr8 (103-194)||(28841609-28841699)
[»] scaffold0316 (3 HSPs)
scaffold0316 (103-204)||(5345-5446)
scaffold0316 (260-297)||(5236-5273)
scaffold0316 (216-244)||(5277-5305)
[»] chr3 (10 HSPs)
chr3 (103-204)||(39822055-39822156)
chr3 (103-204)||(34209878-34209980)
chr3 (216-297)||(39821930-39822011)
chr3 (107-198)||(5881692-5881783)
chr3 (103-199)||(10179330-10179425)
chr3 (103-203)||(50516063-50516162)
chr3 (103-194)||(3744423-3744513)
chr3 (217-267)||(5881574-5881625)
chr3 (260-297)||(34210052-34210089)
chr3 (103-136)||(5885654-5885687)
[»] chr2 (9 HSPs)
chr2 (109-203)||(29458508-29458602)
chr2 (103-203)||(3245044-3245144)
chr2 (103-203)||(37777741-37777841)
chr2 (104-203)||(22989114-22989213)
chr2 (103-190)||(40652733-40652820)
chr2 (216-258)||(3245183-3245225)
chr2 (216-258)||(29458631-29458673)
chr2 (216-267)||(40652625-40652677)
chr2 (107-147)||(26232192-26232232)
[»] chr6 (6 HSPs)
chr6 (103-204)||(32545600-32545701)
chr6 (103-203)||(8643524-8643624)
chr6 (216-258)||(8643443-8643485)
chr6 (103-199)||(16853431-16853526)
chr6 (104-194)||(18880846-18880935)
chr6 (216-244)||(32545741-32545769)
[»] chr4 (2 HSPs)
chr4 (103-204)||(31555404-31555505)
chr4 (216-297)||(31555545-31555626)
[»] scaffold0564 (2 HSPs)
scaffold0564 (107-204)||(1863-1961)
scaffold0564 (260-297)||(2033-2070)
[»] chr7 (4 HSPs)
chr7 (104-184)||(39068596-39068676)
chr7 (216-267)||(39068483-39068535)
chr7 (103-194)||(17026577-17026667)
chr7 (103-190)||(39073276-39073362)
[»] chr1 (5 HSPs)
chr1 (103-203)||(22909436-22909536)
chr1 (103-200)||(42332501-42332599)
chr1 (103-199)||(42329360-42329452)
chr1 (216-265)||(22909349-22909399)
chr1 (103-194)||(39621653-39621743)
[»] scaffold0061 (3 HSPs)
scaffold0061 (103-184)||(50613-50695)
scaffold0061 (216-267)||(50743-50795)
scaffold0061 (103-194)||(46338-46427)
[»] scaffold0017 (3 HSPs)
scaffold0017 (103-184)||(147939-148021)
scaffold0017 (216-267)||(147839-147891)
scaffold0017 (103-194)||(152360-152449)
[»] chr5 (1 HSPs)
chr5 (228-265)||(37149323-37149360)


Alignment Details
Target: chr8 (Bit Score: 84; Significance: 6e-40; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 103 - 194
Target Start/End: Complemental strand, 21566257 - 21566166
Alignment:
Q  103 catgtattctaacctacactttgcttacatgtcatctcacaaataccccttttctaaattattttctataagcattcaccatgtggctctct 194  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  21566257 catgtattctaacctacactttgcttacatgtcatctcacaaatgccccttttctaaattattttctctaagcattcaccatgtggctctct 21566166  T

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Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 103 - 203
Target Start/End: Original strand, 32207851 - 32207951
Alignment:
Q  103 catgtattctaacctacactttgcttacatgtcatctcacaaataccccttttctaaattattttctataagcattcaccatgtggctctctcttttctt 202  Q
    |||||||||||||||||||||||||||||||||| ||||| ||| |||| ||||||| | ||||| ||||||||||||||||||||||||||||||||||    
T  32207851 catgtattctaacctacactttgcttacatgtcacctcaccaattccccctttctaactaattttttataagcattcaccatgtggctctctcttttctt 32207950  T
Q  203 t 203  Q
    |    
T  32207951 t 32207951  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 194
Target Start/End: Original strand, 28841609 - 28841699
Alignment:
Q  103 catgtattctaacctacactttgcttacatgtcatctcacaaataccccttt-tctaaattattttctataagcattcaccatgtggctctct 194  Q
    |||||||||||| ||| ||||||||||  ||||| ||||| ||| ||||  | ||||| | ||||||||  ||||||||||||||||||||||    
T  28841609 catgtattctaagctatactttgcttatgtgtcacctcaccaattcccccctctctaactaattttcta--agcattcaccatgtggctctct 28841699  T

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Target: scaffold0316 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 103 - 204
Target Start/End: Complemental strand, 5446 - 5345
Alignment:
Q  103 catgtattctaacctacactttgcttacatgtcatctcacaaataccccttttctaaattattttctataagcattcaccatgtggctctctcttttctt 202  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||| |||||||||||||||||||||||||||    
T  5446 catgtattctaaactacactttgcttacatgtcatctcacaaatgccccttttctaacttatattctataagtattcaccatgtggctctctcttttctt 5347  T
Q  203 tc 204  Q
    ||    
T  5346 tc 5345  T

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Target: scaffold0316; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 260 - 297
Target Start/End: Complemental strand, 5273 - 5236
Alignment:
Q  260 taacttccttcccactatccattcttattcttacgtct 297  Q
    |||||||| |||||||||||||||||||||||||||||    
T  5273 taacttccctcccactatccattcttattcttacgtct 5236  T

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Target: scaffold0316; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 244
Target Start/End: Complemental strand, 5305 - 5277
Alignment:
Q  216 tattcattcttatatttattatgtaactt 244  Q
    |||||||||||||||||||||||||||||    
T  5305 tattcattcttatatttattatgtaactt 5277  T

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Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 103 - 204
Target Start/End: Complemental strand, 39822156 - 39822055
Alignment:
Q  103 catgtattctaacctacactttgcttacatgtcatctcacaaataccccttttctaaattattttctataagcattcaccatgtggctctctcttttctt 202  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||| |||||||||||||||||||||    
T  39822156 catgtattctaagctacactttgcttacatgtcatctcacaaatgccccttttctaacttatattctataagcattcatcatgtggctctctcttttctt 39822057  T
Q  203 tc 204  Q
    ||    
T  39822056 tc 39822055  T

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Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 103 - 204
Target Start/End: Original strand, 34209878 - 34209980
Alignment:
Q  103 catgtattctaacctacactttgcttacatgtcatctcacaaatacccc-ttttctaaattattttctataagcattcaccatgtggctctctcttttct 201  Q
    ||||||||||||  |||||||||||||||||||||||||||||| |||| |||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  34209878 catgtattctaaattacactttgcttacatgtcatctcacaaatgcccccttttctaacttatattctataagcattcaccatgtggctctctcttttct 34209977  T
Q  202 ttc 204  Q
    |||    
T  34209978 ttc 34209980  T

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Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 216 - 297
Target Start/End: Complemental strand, 39822011 - 39821930
Alignment:
Q  216 tattcattcttatatttattatgtaacttgccaattgagctttctaacttccttcccactatccattcttattcttacgtct 297  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  39822011 tattcattcttatatttattatataacttgccaattgagctttgtaacttccctcccactatccattcttattcttacgtct 39821930  T

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Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 107 - 198
Target Start/End: Complemental strand, 5881783 - 5881692
Alignment:
Q  107 tattctaacctacactttgcttacatgtcatctcacaaataccccttttctaaattattttctataagcattcaccatgtggctctctcttt 198  Q
    |||||||  |||||||||||||| ||||||||||||||||  || |||||||| |||||||||||||||||||||||||||| | |||||||    
T  5881783 tattctatgctacactttgcttatatgtcatctcacaaatgtccattttctaacttattttctataagcattcaccatgtggttttctcttt 5881692  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 199
Target Start/End: Complemental strand, 10179425 - 10179330
Alignment:
Q  103 catgtattctaacctacactttgcttacatgtcatctcacaaat-accccttttctaaattattttctataagcattcaccatgtggctctctctttt 199  Q
    |||||||||||| ||||||||||||||||||||| | ||| |||  |||||||||||| | ||||||  ||||||||||||| |||||| ||||||||    
T  10179425 catgtattctaaactacactttgcttacatgtcaccacaccaatgcccccttttctaactaattttc--taagcattcaccaagtggctttctctttt 10179330  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 203
Target Start/End: Complemental strand, 50516162 - 50516063
Alignment:
Q  103 catgtattctaacctacactttgcttacatgtcatctcacaaatacccc-ttttctaaattattttctataagcattcaccatgtggctctctcttttct 201  Q
    ||||||||||||  ||||||||||||||||| |||||||| ||| ||||  ||||||| | ||||||  ||| | |||||||||||||||||||||||||    
T  50516162 catgtattctaagatacactttgcttacatggcatctcaccaatgccccgctttctaactaattttc--taaactttcaccatgtggctctctcttttct 50516065  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 194
Target Start/End: Complemental strand, 3744513 - 3744423
Alignment:
Q  103 catgtattctaacctacactttgcttacatgtcatctcacaaatac-cccttttctaaattattttctataagcattcaccatgtggctctct 194  Q
    |||||||||||||||||||||||||||  ||||| ||||| ||| | ||| | ||||| | ||||||  ||||||||||||||||||||||||    
T  3744513 catgtattctaacctacactttgcttatgtgtcacctcaccaattctcccctctctaactaattttc--taagcattcaccatgtggctctct 3744423  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 267
Target Start/End: Complemental strand, 5881625 - 5881574
Alignment:
Q  217 attcattcttatatttattatgtaacttgcc-aattgagctttctaacttcc 267  Q
    ||||||||||||||||||||||||||||||| |||||| |||| ||||||||    
T  5881625 attcattcttatatttattatgtaacttgccaaattgaactttgtaacttcc 5881574  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 260 - 297
Target Start/End: Original strand, 34210052 - 34210089
Alignment:
Q  260 taacttccttcccactatccattcttattcttacgtct 297  Q
    |||||||| |||||||||||||||||||||||||||||    
T  34210052 taacttccctcccactatccattcttattcttacgtct 34210089  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 136
Target Start/End: Complemental strand, 5885687 - 5885654
Alignment:
Q  103 catgtattctaacctacactttgcttacatgtca 136  Q
    |||||||||||||||||| |||||||||||||||    
T  5885687 catgtattctaacctacattttgcttacatgtca 5885654  T

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Target: chr2 (Bit Score: 79; Significance: 6e-37; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 109 - 203
Target Start/End: Original strand, 29458508 - 29458602
Alignment:
Q  109 ttctaacctacactttgcttacatgtcatctcacaaataccccttttctaaattattttctataagcattcaccatgtggctctctcttttcttt 203  Q
    |||||| ||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  29458508 ttctaagctacactttgcttacatgtcacctcacaaatgccccttttctaacttattttctataagcattcaccatgtggctctctcttttcttt 29458602  T

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Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 103 - 203
Target Start/End: Original strand, 3245044 - 3245144
Alignment:
Q  103 catgtattctaacctacactttgcttacatgtcatctcacaaataccccttttctaaattattttctataagcattcaccatgtggctctctcttttctt 202  Q
    |||||||||||| ||||||||||||||||||||| |||||||||  ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  3245044 catgtattctaaactacactttgcttacatgtcacctcacaaatgtcccttttctaacttattttctttaagcattcaccatgtggctctctcttttctt 3245143  T
Q  203 t 203  Q
    |    
T  3245144 t 3245144  T

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Target: chr2; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 103 - 203
Target Start/End: Original strand, 37777741 - 37777841
Alignment:
Q  103 catgtattctaacctacactttgcttacatgtcatctcacaaataccccttttctaaattattttctataagcattcaccatgtggctctctcttttctt 202  Q
    |||||||||||||||||||||||||||||||||| ||||| ||| |||| ||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  37777741 catgtattctaacctacactttgcttacatgtcacctcaccaattccccctttctaactaattttctataagcattcaccatgtggctctctcttttctt 37777840  T
Q  203 t 203  Q
    |    
T  37777841 t 37777841  T

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Target: chr2; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 104 - 203
Target Start/End: Complemental strand, 22989213 - 22989114
Alignment:
Q  104 atgtattctaacctacactttgcttacatgtcatctcacaaataccccttttctaaattattttctataagcattcaccatgtggctctctcttttcttt 203  Q
    ||||||||||||||||||||||||||||||||| ||||| ||| |||| ||||||| | |||||||||||||||||| |||||| |||||||||||||||    
T  22989213 atgtattctaacctacactttgcttacatgtcacctcaccaattccccctttctaactaattttctataagcattcagcatgtgactctctcttttcttt 22989114  T

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Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 103 - 190
Target Start/End: Complemental strand, 40652820 - 40652733
Alignment:
Q  103 catgtattctaacctacactttgcttacatgtcatctcacaaataccccttttctaaattattttctataagcattcaccatgtggct 190  Q
    |||||||||||| ||||||||| ||||||||||| ||||||||| |||||||||||| |||||||||||||||||||| ||| |||||    
T  40652820 catgtattctaagctacactttccttacatgtcacctcacaaatgccccttttctaacttattttctataagcattcaacatatggct 40652733  T

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Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 258
Target Start/End: Original strand, 3245183 - 3245225
Alignment:
Q  216 tattcattcttatatttattatgtaacttgccaattgagcttt 258  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  3245183 tattcattcttatatttattatgtaacttgccaattgagcttt 3245225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 258
Target Start/End: Original strand, 29458631 - 29458673
Alignment:
Q  216 tattcattcttatatttattatgtaacttgccaattgagcttt 258  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  29458631 tattcattcttatatttattatgtaacttgccaattgagcttt 29458673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 216 - 267
Target Start/End: Complemental strand, 40652677 - 40652625
Alignment:
Q  216 tattcattcttatatttattatgtaacttg-ccaattgagctttctaacttcc 267  Q
    |||||||||||||||||||||||||||||| | ||||||||||| ||||||||    
T  40652677 tattcattcttatatttattatgtaacttgtcaaattgagctttgtaacttcc 40652625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 26232232 - 26232192
Alignment:
Q  107 tattctaacctacactttgcttacatgtcatctcacaaata 147  Q
    |||||||| ||||||||| ||||||||||| ||||||||||    
T  26232232 tattctaaactacactttacttacatgtcacctcacaaata 26232192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 103 - 204
Target Start/End: Original strand, 32545600 - 32545701
Alignment:
Q  103 catgtattctaacctacactttgcttacatgtcatctcacaaataccccttttctaaattattttctataagcattcaccatgtggctctctcttttctt 202  Q
    |||||||| ||| |||||||||||||||||||||||| |||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  32545600 catgtattttaaactacactttgcttacatgtcatcttacaaatgccccttttctaacttatattctataagcattcaccatgtggctctctcttttctt 32545699  T
Q  203 tc 204  Q
    ||    
T  32545700 tc 32545701  T

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Target: chr6; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 103 - 203
Target Start/End: Complemental strand, 8643624 - 8643524
Alignment:
Q  103 catgtattctaacctacactttgcttacatgtcatctcacaaataccccttttctaaattattttctataagcattcaccatgtggctctctcttttctt 202  Q
    |||||||||||| ||||| ||||||||||||||| ||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  8643624 catgtattctaagctacattttgcttacatgtcacctcacaaatgccccttttctaatttattttctttaagcattcaccatgtggctctctcttttctt 8643525  T
Q  203 t 203  Q
    |    
T  8643524 t 8643524  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 258
Target Start/End: Complemental strand, 8643485 - 8643443
Alignment:
Q  216 tattcattcttatatttattatgtaacttgccaattgagcttt 258  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  8643485 tattcattcttatatttattatgtaacttgccaattgagcttt 8643443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 103 - 199
Target Start/End: Original strand, 16853431 - 16853526
Alignment:
Q  103 catgtattctaacctacactttgcttacatgtcatctcacaaatac-cccttttctaaattattttctataagcattcaccatgtggctctctctttt 199  Q
    |||||||||||| ||||||||||||||||||||| | ||| ||| | || |||||||| | ||||||  ||||||||||||| |||||| ||||||||    
T  16853431 catgtattctaaactacactttgcttacatgtcaccacaccaatgctccattttctaactaattttc--taagcattcaccaagtggctttctctttt 16853526  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 194
Target Start/End: Original strand, 18880846 - 18880935
Alignment:
Q  104 atgtattctaacctacactttgcttacatgtcatctca-caaataccccttttctaaattattttctataagcattcaccatgtggctctct 194  Q
    ||||||||||| ||||||||||||||  ||||| |||| ||| | |||| | ||||| | ||||||  ||||||||| ||||||||||||||    
T  18880846 atgtattctaagctacactttgcttatgtgtcacctcaccaattcccccctctctaactaattttc--taagcattctccatgtggctctct 18880935  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 244
Target Start/End: Original strand, 32545741 - 32545769
Alignment:
Q  216 tattcattcttatatttattatgtaactt 244  Q
    |||||||||||||||||||||||||||||    
T  32545741 tattcattcttatatttattatgtaactt 32545769  T

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Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 103 - 204
Target Start/End: Original strand, 31555404 - 31555505
Alignment:
Q  103 catgtattctaacctacactttgcttacatgtcatctcacaaataccccttttctaaattattttctataagcattcaccatgtggctctctcttttctt 202  Q
    |||||||| ||| ||||||||||||||||||||||||||||||| || ||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  31555404 catgtattataagctacactttgcttacatgtcatctcacaaatgcctcttttctaacttatattctataagcattcaccatgtggctctctcttttctt 31555503  T
Q  203 tc 204  Q
    ||    
T  31555504 tc 31555505  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 216 - 297
Target Start/End: Original strand, 31555545 - 31555626
Alignment:
Q  216 tattcattcttatatttattatgtaacttgccaattgagctttctaacttccttcccactatccattcttattcttacgtct 297  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  31555545 tatttattcttatatttattatgtaacttgccaattgagctttgtaacttccctcccactatccattcttattcttacgtct 31555626  T

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Target: scaffold0564 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 107 - 204
Target Start/End: Original strand, 1863 - 1961
Alignment:
Q  107 tattctaacctacactttgcttacatgtcatctcacaaatacccc-ttttctaaattattttctataagcattcaccatgtggctctctcttttctttc 204  Q
    |||||||| ||||||||||||||||||||||||||||||| |||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  1863 tattctaaactacactttgcttacatgtcatctcacaaatgcccccttttctaacttatattctataagcattcaccatgtggctctctcttttctttc 1961  T

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Target: scaffold0564; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 260 - 297
Target Start/End: Original strand, 2033 - 2070
Alignment:
Q  260 taacttccttcccactatccattcttattcttacgtct 297  Q
    |||||||| |||||||||||||||||||||||||||||    
T  2033 taacttccctcccactatccattcttattcttacgtct 2070  T

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Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 104 - 184
Target Start/End: Complemental strand, 39068676 - 39068596
Alignment:
Q  104 atgtattctaacctacactttgcttacatgtcatctcacaaataccccttttctaaattattttctataagcattcaccat 184  Q
    ||||||||||| |||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  39068676 atgtattctaagctacactttgcttatatgtcacctcacaaataccccttttctaacttattttctataagcattcaccat 39068596  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 216 - 267
Target Start/End: Complemental strand, 39068535 - 39068483
Alignment:
Q  216 tattcattcttatatttattatgtaacttgcc-aattgagctttctaacttcc 267  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  39068535 tattcattcttatatttattatgtaacttgccaaattgagctttgtaacttcc 39068483  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 194
Target Start/End: Original strand, 17026577 - 17026667
Alignment:
Q  103 catgtattctaacctacactttgcttacatgtcatctca-caaataccccttttctaaattattttctataagcattcaccatgtggctctct 194  Q
    |||||||||||| ||||||||||||||  ||||| |||| ||| | |||| | ||||| | ||||||  ||||||||||||||||||||||||    
T  17026577 catgtattctaagctacactttgcttatgtgtcacctcaccaattcccccctctctaactaattttc--taagcattcaccatgtggctctct 17026667  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 190
Target Start/End: Complemental strand, 39073362 - 39073276
Alignment:
Q  103 catgtattctaacctacactttgcttacatgtcatctca-caaataccccttttctaaattattttctataagcattcaccatgtggct 190  Q
    |||||||||||||||||||||||||||  ||||| |||| ||| | |||| | ||||| | ||||||  ||||||||||||||||||||    
T  39073362 catgtattctaacctacactttgcttatgtgtcacctcaccaattcccccctctctaactaattttc--taagcattcaccatgtggct 39073276  T

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Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 103 - 203
Target Start/End: Complemental strand, 22909536 - 22909436
Alignment:
Q  103 catgtattctaacctacactttgcttacatgtcatctcacaaataccccttttctaaattattttctataagcattcaccatgtggctctctcttttctt 202  Q
    |||||||||||| ||||||||||||||||||||| || |||| | | | |||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  22909536 catgtattctaaactacactttgcttacatgtcaccttacaattgctcattttctaacttattttctataaacattcaccatgtggctctctcttttctt 22909437  T
Q  203 t 203  Q
    |    
T  22909436 t 22909436  T

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Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 103 - 200
Target Start/End: Original strand, 42332501 - 42332599
Alignment:
Q  103 catgtattctaacctacactttgcttacatgtcatctcacaaatacccct-tttctaaattattttctataagcattcaccatgtggctctctcttttc 200  Q
    |||||||| ||| |||||||||| ||||||| || ||||| ||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||    
T  42332501 catgtattataaactacactttggttacatgacacctcaccaatacccctctttctaactaattttctataagcattcaccatgtggctctctcttttc 42332599  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 199
Target Start/End: Original strand, 42329360 - 42329452
Alignment:
Q  103 catgtattctaacctacactttgcttacatgtcatctcacaaataccccttttctaaattattttctataagcattcaccatgtggctctctctttt 199  Q
    |||||||||||| ||||| |||| |||||||||| ||||| ||||||||    |||| | |||||||||||||||||| ||| ||  ||||||||||    
T  42329360 catgtattctaaactacaatttgattacatgtcacctcaccaatacccc----ctaactaattttctataagcattcaacatatgattctctctttt 42329452  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 265
Target Start/End: Complemental strand, 22909399 - 22909349
Alignment:
Q  216 tattcattcttata-tttattatgtaacttgccaattgagctttctaactt 265  Q
    |||||||||||||| |||||||||||||||| ||||||| |||| ||||||    
T  22909399 tattcattcttataatttattatgtaacttgtcaattgaactttgtaactt 22909349  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 194
Target Start/End: Original strand, 39621653 - 39621743
Alignment:
Q  103 catgtattctaacctacactttgcttacatgtcatctca-caaataccccttttctaaattattttctataagcattcaccatgtggctctct 194  Q
    |||||||||||| ||||||||||||||  ||||| |||| ||| | |||| | ||||| | ||||||  ||||||||| ||||||||||||||    
T  39621653 catgtattctaaactacactttgcttatgtgtcacctcaccaattcccccctctctaactaattttc--taagcattctccatgtggctctct 39621743  T

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Target: scaffold0061 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 103 - 184
Target Start/End: Original strand, 50613 - 50695
Alignment:
Q  103 catgtattctaacctacactttgc-ttacatgtcatctcacaaataccccttttctaaattattttctataagcattcaccat 184  Q
    |||||||||||| ||||||||| | |||||||||| ||||||||| |||||||||||| |||||||||| |||||||||||||    
T  50613 catgtattctaagctacacttttccttacatgtcacctcacaaatgccccttttctaacttattttctacaagcattcaccat 50695  T

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Target: scaffold0061; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 216 - 267
Target Start/End: Original strand, 50743 - 50795
Alignment:
Q  216 tattcattcttatatttattatgtaacttgc-caattgagctttctaacttcc 267  Q
    |||||||||||||||||||||||||||||||  ||||||||||| ||||||||    
T  50743 tattcattcttatatttattatgtaacttgcgaaattgagctttgtaacttcc 50795  T

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Target: scaffold0061; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 194
Target Start/End: Complemental strand, 46427 - 46338
Alignment:
Q  103 catgtattctaacctacactttgcttacatgtcatctcacaaataccccttttctaaattattttctataagcattcaccatgtggctctct 194  Q
    |||||||||||| ||||||||| ||||  ||||| ||||| |||  ||| ||||||| | ||||||  ||||||||||||| ||||||||||    
T  46427 catgtattctaagctacactttacttatgtgtcacctcaccaatttcccctttctaactaattttc--taagcattcaccacgtggctctct 46338  T

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Target: scaffold0017 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 103 - 184
Target Start/End: Complemental strand, 148021 - 147939
Alignment:
Q  103 catgtattctaacctacactttgc-ttacatgtcatctcacaaataccccttttctaaattattttctataagcattcaccat 184  Q
    |||||||||||| ||||||||| | |||||||||| ||||||||| |||||||||||| |||||||||| |||||||||||||    
T  148021 catgtattctaagctacacttttccttacatgtcacctcacaaatgccccttttctaacttattttctacaagcattcaccat 147939  T

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Target: scaffold0017; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 216 - 267
Target Start/End: Complemental strand, 147891 - 147839
Alignment:
Q  216 tattcattcttatatttattatgtaacttgc-caattgagctttctaacttcc 267  Q
    |||||||||||||||||||||||||||||||  ||||||||||| ||||||||    
T  147891 tattcattcttatatttattatgtaacttgcgaaattgagctttgtaacttcc 147839  T

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Target: scaffold0017; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 194
Target Start/End: Original strand, 152360 - 152449
Alignment:
Q  103 catgtattctaacctacactttgcttacatgtcatctcacaaataccccttttctaaattattttctataagcattcaccatgtggctctct 194  Q
    |||||||||||| ||||||||| ||||  ||||| ||||| |||  ||| ||||||| | ||||||  ||||||||||||| ||||||||||    
T  152360 catgtattctaagctacactttacttatgtgtcacctcaccaatttcccctttctaactaattttc--taagcattcaccacgtggctctct 152449  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 265
Target Start/End: Complemental strand, 37149360 - 37149323
Alignment:
Q  228 tatttattatgtaacttgccaattgagctttctaactt 265  Q
    |||||||||||||| |||||||||||||||| ||||||    
T  37149360 tatttattatgtaatttgccaattgagctttgtaactt 37149323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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